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Items: 24

1.

Putative link between Polo-like kinases (PLKs) and Toll-like receptor (TLR) signaling in transformed and primary human immune cells.

El Maadidi S, Weber ANR, Motshwene P, Schüssler JM, Backes D, Dickhöfer S, Wang H, Liu X, Garcia MD, Taumer C, Soufi B, Wolz OO, Klimosch SN, Franz-Wachtel M, Macek B, Gay NJ.

Sci Rep. 2019 Sep 11;9(1):13168. doi: 10.1038/s41598-019-49017-z.

2.

Phosphopeptide Enrichment from Bacterial Samples Utilizing Titanium Oxide Affinity Chromatography.

Soufi B, Täumer C, Semanjski M, Macek B.

Methods Mol Biol. 2018;1841:231-247. doi: 10.1007/978-1-4939-8695-8_16.

PMID:
30259490
3.

An Inhibitor of GSK3B and HDACs Kills Pancreatic Cancer Cells and Slows Pancreatic Tumor Growth and Metastasis in Mice.

Edderkaoui M, Chheda C, Soufi B, Zayou F, Hu RW, Ramanujan VK, Pan X, Boros LG, Tajbakhsh J, Madhav A, Bhowmick NA, Wang Q, Lewis M, Tuli R, Habtezion A, Murali R, Pandol SJ.

Gastroenterology. 2018 Dec;155(6):1985-1998.e5. doi: 10.1053/j.gastro.2018.08.028. Epub 2018 Aug 23.

4.

Parallel reaction monitoring on a Q Exactive mass spectrometer increases reproducibility of phosphopeptide detection in bacterial phosphoproteomics measurements.

Taumer C, Griesbaum L, Kovacevic A, Soufi B, Nalpas NC, Macek B.

J Proteomics. 2018 Oct 30;189:60-66. doi: 10.1016/j.jprot.2018.03.028. Epub 2018 Mar 29.

PMID:
29605292
5.

Proteome-wide measurement of non-canonical bacterial mistranslation by quantitative mass spectrometry of protein modifications.

Cvetesic N, Semanjski M, Soufi B, Krug K, Gruic-Sovulj I, Macek B.

Sci Rep. 2016 Jul 5;6:28631. doi: 10.1038/srep28631.

6.

Mass Spectrometry-Based Bacterial Proteomics: Focus on Dermatologic Microbial Pathogens.

Soufi Y, Soufi B.

Front Microbiol. 2016 Feb 19;7:181. doi: 10.3389/fmicb.2016.00181. eCollection 2016. Review.

7.

Phosphoproteome dynamics mediate revival of bacterial spores.

Rosenberg A, Soufi B, Ravikumar V, Soares NC, Krug K, Smith Y, Macek B, Ben-Yehuda S.

BMC Biol. 2015 Sep 17;13:76. doi: 10.1186/s12915-015-0184-7.

8.

Control of Morphological Differentiation of Streptomyces coelicolor A3(2) by Phosphorylation of MreC and PBP2.

Ladwig N, Franz-Wachtel M, Hezel F, Soufi B, Macek B, Wohlleben W, Muth G.

PLoS One. 2015 Apr 30;10(4):e0125425. doi: 10.1371/journal.pone.0125425. eCollection 2015.

9.

Characterization of the E. coli proteome and its modifications during growth and ethanol stress.

Soufi B, Krug K, Harst A, Macek B.

Front Microbiol. 2015 Feb 18;6:103. doi: 10.3389/fmicb.2015.00103. eCollection 2015.

10.

Global analysis of bacterial membrane proteins and their modifications.

Soufi B, Macek B.

Int J Med Microbiol. 2015 Feb;305(2):203-8. doi: 10.1016/j.ijmm.2014.12.017. Epub 2014 Dec 24. Review.

PMID:
25595026
11.

Ctk1 function is necessary for full translation initiation activity in Saccharomyces cerevisiae.

Coordes B, Brünger KM, Burger K, Soufi B, Horenk J, Eick D, Olsen JV, Sträßer K.

Eukaryot Cell. 2015 Jan;14(1):86-95. doi: 10.1128/EC.00106-14. Epub 2014 Nov 21.

12.

Stable isotope labeling by amino acids applied to bacterial cell culture.

Soufi B, Macek B.

Methods Mol Biol. 2014;1188:9-22. doi: 10.1007/978-1-4939-1142-4_2.

PMID:
25059601
13.

Interplay of the serine/threonine-kinase StkP and the paralogs DivIVA and GpsB in pneumococcal cell elongation and division.

Fleurie A, Manuse S, Zhao C, Campo N, Cluzel C, Lavergne JP, Freton C, Combet C, Guiral S, Soufi B, Macek B, Kuru E, VanNieuwenhze MS, Brun YV, Di Guilmi AM, Claverys JP, Galinier A, Grangeasse C.

PLoS Genet. 2014 Apr 10;10(4):e1004275. doi: 10.1371/journal.pgen.1004275. eCollection 2014 Apr.

14.

Cell-selective labeling using amino acid precursors for proteomic studies of multicellular environments.

Gauthier NP, Soufi B, Walkowicz WE, Pedicord VA, Mavrakis KJ, Macek B, Gin DY, Sander C, Miller ML.

Nat Methods. 2013 Aug;10(8):768-73. doi: 10.1038/nmeth.2529. Epub 2013 Jun 30.

15.

A rare case of giant congenital left atrial appendage aneurysm in a 4-month-old child.

Di Salvo G, Al-Sehly A, Fadley FA, Bulbul ZA, Fadel BM, Fayyadh MA, Soufi BA.

J Cardiovasc Med (Hagerstown). 2017 Sep;18(9):723-724. doi: 10.2459/JCM.0b013e328362786c. No abstract available.

PMID:
23751599
16.

Proteomics reveals evidence of cross-talk between protein modifications in bacteria: focus on acetylation and phosphorylation.

Soufi B, Soares NC, Ravikumar V, Macek B.

Curr Opin Microbiol. 2012 Jun;15(3):357-63. doi: 10.1016/j.mib.2012.05.003. Epub 2012 May 24. Review.

PMID:
22633124
17.

Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis.

Soufi B, Kumar C, Gnad F, Mann M, Mijakovic I, Macek B.

J Proteome Res. 2010 Jul 2;9(7):3638-46. doi: 10.1021/pr100150w.

PMID:
20509597
18.

Bacillus subtilis BY-kinase PtkA controls enzyme activity and localization of its protein substrates.

Jers C, Pedersen MM, Paspaliari DK, Schütz W, Johnsson C, Soufi B, Macek B, Jensen PR, Mijakovic I.

Mol Microbiol. 2010 Jul;77(2):287-99. doi: 10.1111/j.1365-2958.2010.07227.x. Epub 2010 May 24.

19.

Global analysis of the yeast osmotic stress response by quantitative proteomics.

Soufi B, Kelstrup CD, Stoehr G, Fröhlich F, Walther TC, Olsen JV.

Mol Biosyst. 2009 Nov;5(11):1337-46. doi: 10.1039/b902256b. Epub 2009 Sep 10.

PMID:
19823750
20.

NetPhosBac - a predictor for Ser/Thr phosphorylation sites in bacterial proteins.

Miller ML, Soufi B, Jers C, Blom N, Macek B, Mijakovic I.

Proteomics. 2009 Jan;9(1):116-25. doi: 10.1002/pmic.200800285.

PMID:
19053140
21.

Phosphoproteomics in bacteria: towards a systemic understanding of bacterial phosphorylation networks.

Jers C, Soufi B, Grangeasse C, Deutscher J, Mijakovic I.

Expert Rev Proteomics. 2008 Aug;5(4):619-27. doi: 10.1586/14789450.5.4.619. Review.

PMID:
18761471
22.

The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins.

Soufi B, Gnad F, Jensen PR, Petranovic D, Mann M, Mijakovic I, Macek B.

Proteomics. 2008 Sep;8(17):3486-93. doi: 10.1002/pmic.200800069.

PMID:
18668697
23.

Phosphoproteome analysis of E. coli reveals evolutionary conservation of bacterial Ser/Thr/Tyr phosphorylation.

Macek B, Gnad F, Soufi B, Kumar C, Olsen JV, Mijakovic I, Mann M.

Mol Cell Proteomics. 2008 Feb;7(2):299-307. Epub 2007 Oct 15.

24.

Insights from site-specific phosphoproteomics in bacteria.

Soufi B, Jers C, Hansen ME, Petranovic D, Mijakovic I.

Biochim Biophys Acta. 2008 Jan;1784(1):186-92. Epub 2007 Aug 15. Review.

PMID:
17881301

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