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Items: 46

1.

COI1-dependent jasmonate signalling affects growth, metabolite production and cell wall protein composition in arabidopsis.

Bömer M, O'Brien JA, Pérez-Salamó I, Krasauskas J, Finch P, Briones A, Daudi A, Souda P, Tsui TL, Whitelegge JP, Paul Bolwell G, Devoto A.

Ann Bot. 2018 Dec 31;122(7):1117-1129. doi: 10.1093/aob/mcy109.

2.

Remodeling of the plasma membrane in preparation for sperm-egg recognition: roles of acrosomal proteins.

Tanphaichitr N, Kongmanas K, Kruevaisayawan H, Saewu A, Sugeng C, Fernandes J, Souda P, Angel JB, Faull KF, Aitken RJ, Whitelegge J, Hardy D, Berger T, Baker M.

Asian J Androl. 2015 Jul-Aug;17(4):574-82. doi: 10.4103/1008-682X.152817.

3.

Combined phosphoproteomics and bioinformatics strategy in deciphering drug resistant related pathways in triple negative breast cancer.

Deng X, Kohanfars M, Hsu HM, Souda P, Capri J, Whitelegge JP, Chang HR.

Int J Proteomics. 2014;2014:390781. doi: 10.1155/2014/390781. Epub 2014 Nov 13.

4.

Proteomic Characterization of Pig Sperm Anterior Head Plasma Membrane Reveals Roles of Acrosomal Proteins in ZP3 Binding.

Kongmanas K, Kruevaisayawan H, Saewu A, Sugeng C, Fernandes J, Souda P, Angel JB, Faull KF, Aitken RJ, Whitelegge J, Hardy D, Berger T, Baker MA, Tanphaichitr N.

J Cell Physiol. 2015 Feb;230(2):449-63. doi: 10.1002/jcp.24728.

PMID:
25078272
5.

Recruitment of septin cytoskeletal proteins by botulinum toxin A protease determines its remarkable stability.

Vagin O, Tokhtaeva E, Garay PE, Souda P, Bassilian S, Whitelegge JP, Lewis R, Sachs G, Wheeler L, Aoki R, Fernandez-Salas E.

J Cell Sci. 2014 Aug 1;127(Pt 15):3294-308. doi: 10.1242/jcs.146324. Epub 2014 Jun 13.

6.

Drip, Ship, and Grip, then Slice and Dice: Comprehensive Stroke Center Management of Cervical and Intracranial Emboli.

Hinman JD, Rao NM, Yallapragada A, Capri J, Souda P, Whitelegge J, Yong WH, Jahan R, Quinones-Baldrich W, Saver JL.

Front Neurol. 2013 Jul 29;4:104. doi: 10.3389/fneur.2013.00104. eCollection 2013.

7.

Structural similarity of wild-type and ALS-mutant superoxide dismutase-1 fibrils using limited proteolysis and atomic force microscopy.

Chan PK, Chattopadhyay M, Sharma S, Souda P, Gralla EB, Borchelt DR, Whitelegge JP, Valentine JS.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):10934-9. doi: 10.1073/pnas.1309613110. Epub 2013 Jun 18.

8.

Impairment of mitochondria in adult mouse brain overexpressing predominantly full-length, N-terminally acetylated human α-synuclein.

Sarafian TA, Ryan CM, Souda P, Masliah E, Kar UK, Vinters HV, Mathern GW, Faull KF, Whitelegge JP, Watson JB.

PLoS One. 2013 May 7;8(5):e63557. doi: 10.1371/journal.pone.0063557. Print 2013.

9.

Evidence that YycJ is a novel 5'-3' double-stranded DNA exonuclease acting in Bacillus anthracis mismatch repair.

Yang H, Yung M, Li L, Hoch JA, Ryan CM, Kar UK, Souda P, Whitelegge JP, Miller JH.

DNA Repair (Amst). 2013 May 1;12(5):334-46. doi: 10.1016/j.dnarep.2013.02.002. Epub 2013 Mar 13.

PMID:
23491602
10.

Mass spectrometry (LC-MS/MS) identified proteomic biosignatures of breast cancer in proximal fluid.

Whelan SA, He J, Lu M, Souda P, Saxton RE, Faull KF, Whitelegge JP, Chang HR.

J Proteome Res. 2012 Oct 5;11(10):5034-45. doi: 10.1021/pr300606e. Epub 2012 Sep 20.

11.

Phenotypic and genomic analysis of hypervirulent human-associated Bordetella bronchiseptica.

Ahuja U, Liu M, Tomida S, Park J, Souda P, Whitelegge J, Li H, Harvill ET, Parkhill J, Miller JF.

BMC Microbiol. 2012 Aug 6;12:167. doi: 10.1186/1471-2180-12-167.

12.

Defining intact protein primary structures from saliva: a step toward the human proteome project.

Halgand F, Zabrouskov V, Bassilian S, Souda P, Loo JA, Faull KF, Wong DT, Whitelegge JP.

Anal Chem. 2012 May 15;84(10):4383-95. doi: 10.1021/ac203337s. Epub 2012 May 2.

13.

Mass spectral measurements of the apoHDL in horse (Equus caballus) cerebrospinal fluid.

Puppione DL, Della Donna L, Bassilian S, Souda P, MacDonald MH, Whitelegge JP.

Comp Biochem Physiol Part D Genomics Proteomics. 2012 Jun;7(2):172-4. doi: 10.1016/j.cbd.2012.02.002. Epub 2012 Feb 12.

PMID:
22377539
14.

A peroxidase-dependent apoplastic oxidative burst in cultured Arabidopsis cells functions in MAMP-elicited defense.

O'Brien JA, Daudi A, Finch P, Butt VS, Whitelegge JP, Souda P, Ausubel FM, Bolwell GP.

Plant Physiol. 2012 Apr;158(4):2013-27. doi: 10.1104/pp.111.190140. Epub 2012 Feb 7.

15.

Characterization of the endothelial cell cytoskeleton following HLA class I ligation.

Ziegler ME, Souda P, Jin YP, Whitelegge JP, Reed EF.

PLoS One. 2012;7(1):e29472. doi: 10.1371/journal.pone.0029472. Epub 2012 Jan 11.

16.

Mass spectrometric measurements of the apolipoproteins of bovine (Bos taurus) HDL.

Della Donna L, Bassilian S, Souda P, Nebbia C, Whitelegge JP, Puppione DL.

Comp Biochem Physiol Part D Genomics Proteomics. 2012 Mar;7(1):9-13. doi: 10.1016/j.cbd.2011.10.001. Epub 2011 Oct 12.

17.

Comparative proteomic analysis of differentially expressed proteins in the urine of reservoir hosts of leptospirosis.

Nally JE, Monahan AM, Miller IS, Bonilla-Santiago R, Souda P, Whitelegge JP.

PLoS One. 2011;6(10):e26046. doi: 10.1371/journal.pone.0026046. Epub 2011 Oct 17.

18.

Molecular dissection of novel trafficking and processing of the Toxoplasma gondii rhoptry metalloprotease toxolysin-1.

Hajagos BE, Turetzky JM, Peng ED, Cheng SJ, Ryan CM, Souda P, Whitelegge JP, Lebrun M, Dubremetz JF, Bradley PJ.

Traffic. 2012 Feb;13(2):292-304. doi: 10.1111/j.1600-0854.2011.01308.x. Epub 2011 Nov 29.

19.

Profiling of integral membrane proteins and their post translational modifications using high-resolution mass spectrometry.

Souda P, Ryan CM, Cramer WA, Whitelegge J.

Methods. 2011 Dec;55(4):330-6. doi: 10.1016/j.ymeth.2011.09.019. Epub 2011 Sep 29. Review.

20.

Epithelial junctions depend on intercellular trans-interactions between the Na,K-ATPase β₁ subunits.

Tokhtaeva E, Sachs G, Souda P, Bassilian S, Whitelegge JP, Shoshani L, Vagin O.

J Biol Chem. 2011 Jul 22;286(29):25801-12. doi: 10.1074/jbc.M111.252247. Epub 2011 Jun 3.

21.

NdhP and NdhQ: two novel small subunits of the cyanobacterial NDH-1 complex.

Nowaczyk MM, Wulfhorst H, Ryan CM, Souda P, Zhang H, Cramer WA, Whitelegge JP.

Biochemistry. 2011 Feb 22;50(7):1121-4. doi: 10.1021/bi102044b. Epub 2011 Jan 27.

22.

Amniotic and allantoic fluids from experimentally infected sheep contain immunoglobulin specific for Chlamydophila abortus.

Marques PX, O'Donovan J, Souda P, Gutierrez J, Williams EJ, Worrall S, McElroy M, Proctor A, Brady C, Sammin D, Basset H, Whitelegge JP, Markey BK, Nally JE.

Vet Immunol Immunopathol. 2011 Mar 15;140(1-2):1-9. doi: 10.1016/j.vetimm.2010.11.002. Epub 2010 Nov 13.

PMID:
21126774
23.

A novel 3-methylhistidine modification of yeast ribosomal protein Rpl3 is dependent upon the YIL110W methyltransferase.

Webb KJ, Zurita-Lopez CI, Al-Hadid Q, Laganowsky A, Young BD, Lipson RS, Souda P, Faull KF, Whitelegge JP, Clarke SG.

J Biol Chem. 2010 Nov 26;285(48):37598-606. doi: 10.1074/jbc.M110.170787. Epub 2010 Sep 23.

24.

Deconvolution and database search of complex tandem mass spectra of intact proteins: a combinatorial approach.

Liu X, Inbar Y, Dorrestein PC, Wynne C, Edwards N, Souda P, Whitelegge JP, Bafna V, Pevzner PA.

Mol Cell Proteomics. 2010 Dec;9(12):2772-82. doi: 10.1074/mcp.M110.002766. Epub 2010 Sep 20.

25.

Data-directed top-down Fourier-transform mass spectrometry of a large integral membrane protein complex: photosystem II from Galdieria sulphuraria.

Thangaraj B, Ryan CM, Souda P, Krause K, Faull KF, Weber AP, Fromme P, Whitelegge JP.

Proteomics. 2010 Oct;10(20):3644-56. doi: 10.1002/pmic.201000190.

26.

mzML--a community standard for mass spectrometry data.

Martens L, Chambers M, Sturm M, Kessner D, Levander F, Shofstahl J, Tang WH, Römpp A, Neumann S, Pizarro AD, Montecchi-Palazzi L, Tasman N, Coleman M, Reisinger F, Souda P, Hermjakob H, Binz PA, Deutsch EW.

Mol Cell Proteomics. 2011 Jan;10(1):R110.000133. doi: 10.1074/mcp.R110.000133. Epub 2010 Aug 17.

27.

PYY(1-36) is the major form of PYY in rat distal small intestine: quantification using high-resolution mass spectrometry.

Keire DA, Whitelegge JP, Souda P, Faull KF, Bassilian S, Reidelberger RD, Haver AC, Reeve JR Jr.

Regul Pept. 2010 Dec 10;165(2-3):151-7. doi: 10.1016/j.regpep.2010.06.006. Epub 2010 Jul 6.

28.

Identification of immunologically relevant proteins of Chlamydophila abortus using sera from experimentally infected pregnant ewes.

Marques PX, Souda P, O'Donovan J, Gutierrez J, Gutierrez EJ, Worrall S, McElroy M, Proctor A, Brady C, Sammin D, Basset HF, Whitelegge JP, Markey BE, Nally JE.

Clin Vaccine Immunol. 2010 Aug;17(8):1274-81. doi: 10.1128/CVI.00163-10. Epub 2010 Jun 16.

29.

A novel EF-hand protein, CRACR2A, is a cytosolic Ca2+ sensor that stabilizes CRAC channels in T cells.

Srikanth S, Jung HJ, Kim KD, Souda P, Whitelegge J, Gwack Y.

Nat Cell Biol. 2010 May;12(5):436-46. doi: 10.1038/ncb2045. Epub 2010 Apr 25.

30.

Cysteine string protein beta is prominently associated with nerve terminals and secretory organelles in mouse brain.

Gundersen CB, Kohan SA, Souda P, Whitelegge JP, Umbach JA.

Brain Res. 2010 May 21;1332:1-11. doi: 10.1016/j.brainres.2010.03.044. Epub 2010 Mar 23.

PMID:
20338151
31.

Detection of two distinct forms of apoC-I in great apes.

Puppione DL, Ryan CM, Bassilian S, Souda P, Xiao X, Ryder OA, Whitelegge JP.

Comp Biochem Physiol Part D Genomics Proteomics. 2010 Mar;5(1):73-9. doi: 10.1016/j.cbd.2009.12.003.

32.

Confident assignment of intact mass tags to human salivary cystatins using top-down Fourier-transform ion cyclotron resonance mass spectrometry.

Ryan CM, Souda P, Halgand F, Wong DT, Loo JA, Faull KF, Whitelegge JP.

J Am Soc Mass Spectrom. 2010 Jun;21(6):908-17. doi: 10.1016/j.jasms.2010.01.025. Epub 2010 Feb 1.

33.

Micro-heterogeneity of human saliva Peptide P-C characterized by high-resolution top-down Fourier-transform mass spectrometry.

Halgand F, Zabrouskov V, Bassilian S, Souda P, Wong DT, Loo JA, Faull KF, Whitelegge JP.

J Am Soc Mass Spectrom. 2010 May;21(5):868-77. doi: 10.1016/j.jasms.2010.01.026. Epub 2010 Feb 1.

34.

Post-translational modifications of integral membrane proteins resolved by top-down Fourier transform mass spectrometry with collisionally activated dissociation.

Ryan CM, Souda P, Bassilian S, Ujwal R, Zhang J, Abramson J, Ping P, Durazo A, Bowie JU, Hasan SS, Baniulis D, Cramer WA, Faull KF, Whitelegge JP.

Mol Cell Proteomics. 2010 May;9(5):791-803. doi: 10.1074/mcp.M900516-MCP200. Epub 2010 Jan 21.

35.

Mass spectral analyses of the two major apolipoproteins of great ape high density lipoproteins.

Puppione DL, Donna LD, Laganowsky AD, Bassilian S, Souda P, Ryder OA, Whitelegge JP.

Comp Biochem Physiol Part D Genomics Proteomics. 2009 Dec;4(4):305-9.

36.

Protein-Sequence Polymorphisms and Post-translational Modifications in Proteins from Human Saliva using Top-Down Fourier-transform Ion Cyclotron Resonance Mass Spectrometry.

Whitelegge JP, Zabrouskov V, Halgand F, Souda P, Bassilian S, Yan W, Wolinsky L, Loo JA, Wong DT, Faull KF.

Int J Mass Spectrom. 2007 Dec 1;268(2-3):190-197.

37.

Mass spectral analysis of the apolipoproteins on dog (Canis lupus familiaris) high density lipoproteins. Detection of apolipoprotein A-II.

Puppione DL, Bassilian S, Souda P, MacDonald MH, Halgand F, Whitelegge JP.

Comp Biochem Physiol Part D Genomics Proteomics. 2008 Dec;3(4):290-6. doi: 10.1016/j.cbd.2008.08.002. Epub 2008 Sep 7. Erratum in: Comp Biochem Physiol Part D Genomics Proteomics. 2009 Jun;4(2):139. Hagland, Frederic [corrected to Halgand, Frederic].

PMID:
20483223
38.

Amide bonds assemble pili on the surface of bacilli.

Budzik JM, Marraffini LA, Souda P, Whitelegge JP, Faull KF, Schneewind O.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10215-20. doi: 10.1073/pnas.0803565105. Epub 2008 Jul 11.

39.

Revealing the dynamics of the 20 S proteasome phosphoproteome: a combined CID and electron transfer dissociation approach.

Lu H, Zong C, Wang Y, Young GW, Deng N, Souda P, Li X, Whitelegge J, Drews O, Yang PY, Ping P.

Mol Cell Proteomics. 2008 Nov;7(11):2073-89. doi: 10.1074/mcp.M800064-MCP200. Epub 2008 Jun 25.

40.

The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions.

Denny P, Hagen FK, Hardt M, Liao L, Yan W, Arellanno M, Bassilian S, Bedi GS, Boontheung P, Cociorva D, Delahunty CM, Denny T, Dunsmore J, Faull KF, Gilligan J, Gonzalez-Begne M, Halgand F, Hall SC, Han X, Henson B, Hewel J, Hu S, Jeffrey S, Jiang J, Loo JA, Ogorzalek Loo RR, Malamud D, Melvin JE, Miroshnychenko O, Navazesh M, Niles R, Park SK, Prakobphol A, Ramachandran P, Richert M, Robinson S, Sondej M, Souda P, Sullivan MA, Takashima J, Than S, Wang J, Whitelegge JP, Witkowska HE, Wolinsky L, Xie Y, Xu T, Yu W, Ytterberg J, Wong DT, Yates JR 3rd, Fisher SJ.

J Proteome Res. 2008 May;7(5):1994-2006. doi: 10.1021/pr700764j. Epub 2008 Mar 25.

41.

The minimum information about a proteomics experiment (MIAPE).

Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK Jr, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR 3rd, Hermjakob H.

Nat Biotechnol. 2007 Aug;25(8):887-93. Review.

PMID:
17687369
42.
43.

Top-down mass spectrometry of integral membrane proteins.

Whitelegge J, Halgand F, Souda P, Zabrouskov V.

Expert Rev Proteomics. 2006 Dec;3(6):585-96. Review.

PMID:
17181473
44.

Exercise affects energy metabolism and neural plasticity-related proteins in the hippocampus as revealed by proteomic analysis.

Ding Q, Vaynman S, Souda P, Whitelegge JP, Gomez-Pinilla F.

Eur J Neurosci. 2006 Sep;24(5):1265-76.

PMID:
16987214
45.

Mass spectral analysis of the apolipoproteins on mouse high density lipoproteins. Detection of post-translational modifications.

Puppione DL, Yam LM, Bassilian S, Souda P, Castellani LW, Schumaker VN, Whitelegge JP.

Biochim Biophys Acta. 2006 Aug;1764(8):1363-71. Epub 2006 Jun 18.

PMID:
16876491
46.

Sequencing covalent modifications of membrane proteins.

Whitelegge JP, Laganowsky A, Nishio J, Souda P, Zhang H, Cramer WA.

J Exp Bot. 2006;57(7):1515-22. Epub 2006 Mar 30.

PMID:
16574746

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