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Items: 36

1.

Arabidopsis thaliana Seed dormancy 4-Like regulates seed dormancy and germination by mediating the gibberellin pathway.

Cao H, Han Y, Li J, Ding M, Li Y, Li X, Chen F, Soppe WJJ, Liu Y.

J Exp Bot. 2019 Oct 23. pii: erz471. doi: 10.1093/jxb/erz471. [Epub ahead of print]

PMID:
31641755
2.

ETR1/RDO3 Regulates Seed Dormancy by Relieving the Inhibitory Effect of the ERF12-TPL Complex on DELAY OF GERMINATION1 Expression.

Li X, Chen T, Li Y, Wang Z, Cao H, Chen F, Li Y, Soppe WJJ, Li W, Liu Y.

Plant Cell. 2019 Apr;31(4):832-847. doi: 10.1105/tpc.18.00449. Epub 2019 Mar 5.

3.

Dynamic hydrolase labelling as a marker for seed quality in Arabidopsis seeds.

Viñegra de la Torre N, Kaschani F, Kaiser M, van der Hoorn RAL, Soppe WJJ, Misas Villamil JC.

Biochem J. 2019 Mar 12;476(5):843-857. doi: 10.1042/BCJ20180911.

PMID:
30782971
4.

Seed traits are pleiotropically regulated by the flowering time gene PERPETUAL FLOWERING 1 (PEP1) in the perennial Arabis alpina.

Hughes PW, Soppe WJJ, Albani MC.

Mol Ecol. 2019 Mar;28(5):1183-1201. doi: 10.1111/mec.15034. Epub 2019 Mar 15.

PMID:
30712274
5.

DELAY OF GERMINATION1 requires PP2C phosphatases of the ABA signalling pathway to control seed dormancy.

Née G, Kramer K, Nakabayashi K, Yuan B, Xiang Y, Miatton E, Finkemeier I, Soppe WJJ.

Nat Commun. 2017 Jul 13;8(1):72. doi: 10.1038/s41467-017-00113-6.

6.

Redox Changes During the Cell Cycle in the Embryonic Root Meristem of Arabidopsis thaliana.

de Simone A, Hubbard R, de la Torre NV, Velappan Y, Wilson M, Considine MJ, Soppe WJJ, Foyer CH.

Antioxid Redox Signal. 2017 Dec 20;27(18):1505-1519. doi: 10.1089/ars.2016.6959. Epub 2017 May 30.

7.

Arabidopsis seed germination speed is controlled by SNL histone deacetylase-binding factor-mediated regulation of AUX1.

Wang Z, Chen F, Li X, Cao H, Ding M, Zhang C, Zuo J, Xu C, Xu J, Deng X, Xiang Y, Soppe WJ, Liu Y.

Nat Commun. 2016 Nov 11;7:13412. doi: 10.1038/ncomms13412.

8.

Transcriptome and Degradome Sequencing Reveals Dormancy Mechanisms of Cunninghamia lanceolata Seeds.

Cao D, Xu H, Zhao Y, Deng X, Liu Y, Soppe WJ, Lin J.

Plant Physiol. 2016 Dec;172(4):2347-2362. Epub 2016 Oct 19.

9.

The release of dormancy, a wake-up call for seeds to germinate.

Née G, Xiang Y, Soppe WJ.

Curr Opin Plant Biol. 2017 Feb;35:8-14. doi: 10.1016/j.pbi.2016.09.002. Epub 2016 Oct 3. Review.

10.

Sequence Polymorphisms at the REDUCED DORMANCY5 Pseudophosphatase Underlie Natural Variation in Arabidopsis Dormancy.

Xiang Y, Song B, Née G, Kramer K, Finkemeier I, Soppe WJ.

Plant Physiol. 2016 Aug;171(4):2659-70. doi: 10.1104/pp.16.00525. Epub 2016 Jun 10.

11.

Alternative splicing enhances transcriptome complexity in desiccating seeds.

Srinivasan A, Jiménez-Gómez JM, Fornara F, Soppe WJ, Brambilla V.

J Integr Plant Biol. 2016 Dec;58(12):947-958. doi: 10.1111/jipb.12482. Epub 2016 Jul 20.

12.

Seed Dormancy in Arabidopsis Requires Self-Binding Ability of DOG1 Protein and the Presence of Multiple Isoforms Generated by Alternative Splicing.

Nakabayashi K, Bartsch M, Ding J, Soppe WJ.

PLoS Genet. 2015 Dec 18;11(12):e1005737. doi: 10.1371/journal.pgen.1005737. eCollection 2015 Dec.

13.

Reduced Dormancy5 encodes a protein phosphatase 2C that is required for seed dormancy in Arabidopsis.

Xiang Y, Nakabayashi K, Ding J, He F, Bentsink L, Soppe WJ.

Plant Cell. 2014 Nov;26(11):4362-75. doi: 10.1105/tpc.114.132811. Epub 2014 Nov 18.

14.

HISTONE DEACETYLASE 9 represses seedling traits in Arabidopsis thaliana dry seeds.

van Zanten M, Zöll C, Wang Z, Philipp C, Carles A, Li Y, Kornet NG, Liu Y, Soppe WJ.

Plant J. 2014 Nov;80(3):475-88. doi: 10.1111/tpj.12646. Epub 2014 Sep 30.

15.

Arabidopsis paired amphipathic helix proteins SNL1 and SNL2 redundantly regulate primary seed dormancy via abscisic acid-ethylene antagonism mediated by histone deacetylation.

Wang Z, Cao H, Sun Y, Li X, Chen F, Carles A, Li Y, Ding M, Zhang C, Deng X, Soppe WJ, Liu YX.

Plant Cell. 2013 Jan;25(1):149-66. doi: 10.1105/tpc.112.108191. Epub 2013 Jan 31.

16.

The time required for dormancy release in Arabidopsis is determined by DELAY OF GERMINATION1 protein levels in freshly harvested seeds.

Nakabayashi K, Bartsch M, Xiang Y, Miatton E, Pellengahr S, Yano R, Seo M, Soppe WJ.

Plant Cell. 2012 Jul;24(7):2826-38. doi: 10.1105/tpc.112.100214. Epub 2012 Jul 24.

17.

Molecular mechanisms of seed dormancy.

Graeber K, Nakabayashi K, Miatton E, Leubner-Metzger G, Soppe WJ.

Plant Cell Environ. 2012 Oct;35(10):1769-86. doi: 10.1111/j.1365-3040.2012.02542.x. Epub 2012 Jun 19. Review.

18.

Control and consequences of chromatin compaction during seed maturation in Arabidopsis thaliana.

van Zanten M, Carles A, Li Y, Soppe WJ.

Plant Signal Behav. 2012 Mar;7(3):338-41. doi: 10.4161/psb.19281. Epub 2012 Mar 1.

19.

Roll to roll fabrication of thin film silicon solar cells on nano-textured substrates.

Soppe WJ, Borg H, Van Aken BB, Devilee C, Dörenkämper M, Goris M, Heijna MC, Löffler J, Peeters P.

J Nanosci Nanotechnol. 2011 Dec;11(12):10604-9.

PMID:
22408957
20.

Seed maturation in Arabidopsis thaliana is characterized by nuclear size reduction and increased chromatin condensation.

van Zanten M, Koini MA, Geyer R, Liu Y, Brambilla V, Bartels D, Koornneef M, Fransz P, Soppe WJ.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20219-24. doi: 10.1073/pnas.1117726108. Epub 2011 Nov 28.

21.

A novel role for histone methyltransferase KYP/SUVH4 in the control of Arabidopsis primary seed dormancy.

Zheng J, Chen F, Wang Z, Cao H, Li X, Deng X, Soppe WJ, Li Y, Liu Y.

New Phytol. 2012 Feb;193(3):605-16. doi: 10.1111/j.1469-8137.2011.03969.x. Epub 2011 Nov 28.

22.

Chromatin dynamics during seed dormancy.

Liu Y, Geyer R, Brambilla V, Nakabayashi K, Soppe WJ.

Methods Mol Biol. 2011;773:239-57. doi: 10.1007/978-1-61779-231-1_15. Review.

PMID:
21898260
23.

Identification of the Arabidopsis REDUCED DORMANCY 2 gene uncovers a role for the polymerase associated factor 1 complex in seed dormancy.

Liu Y, Geyer R, van Zanten M, Carles A, Li Y, Hörold A, van Nocker S, Soppe WJ.

PLoS One. 2011;6(7):e22241. doi: 10.1371/journal.pone.0022241. Epub 2011 Jul 25.

24.

DOG1 expression is predicted by the seed-maturation environment and contributes to geographical variation in germination in Arabidopsis thaliana.

Chiang GC, Bartsch M, Barua D, Nakabayashi K, Debieu M, Kronholm I, Koornneef M, Soppe WJ, Donohue K, De Meaux J.

Mol Ecol. 2011 Aug;20(16):3336-49. doi: 10.1111/j.1365-294X.2011.05181.x. Epub 2011 Jul 8.

PMID:
21740475
25.

The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis.

Sugliani M, Brambilla V, Clerkx EJ, Koornneef M, Soppe WJ.

Plant Cell. 2010 Jun;22(6):1936-46. doi: 10.1105/tpc.110.074674. Epub 2010 Jun 4.

26.

Natural modifiers of seed longevity in the Arabidopsis mutants abscisic acid insensitive3-5 (abi3-5) and leafy cotyledon1-3 (lec1-3).

Sugliani M, Rajjou L, Clerkx EJ, Koornneef M, Soppe WJ.

New Phytol. 2009 Dec;184(4):898-908. doi: 10.1111/j.1469-8137.2009.03023.x. Epub 2009 Sep 14.

27.

Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination.

Holdsworth MJ, Bentsink L, Soppe WJ.

New Phytol. 2008;179(1):33-54. doi: 10.1111/j.1469-8137.2008.02437.x. Epub 2008 Apr 14. Review.

28.
29.

Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats.

Kinoshita Y, Saze H, Kinoshita T, Miura A, Soppe WJ, Koornneef M, Kakutani T.

Plant J. 2007 Jan;49(1):38-45. Epub 2006 Nov 27.

30.

Histone modifications in Arabidopsis- high methylation of H3 lysine 9 is dispensable for constitutive heterochromatin.

Jasencakova Z, Soppe WJ, Meister A, Gernand D, Turner BM, Schubert I.

Plant J. 2003 Feb;33(3):471-80.

31.

DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.

Soppe WJ, Jasencakova Z, Houben A, Kakutani T, Meister A, Huang MS, Jacobsen SE, Schubert I, Fransz PF.

EMBO J. 2002 Dec 2;21(23):6549-59.

32.

Combined effects of lowered oxygen and toxicants (copper and diazinon) on the mayfly Ephoron virgo.

van der Geest HG, Soppe WJ, Greve GD, Kroon A, Kraak MH.

Environ Toxicol Chem. 2002 Feb;21(2):431-6.

PMID:
11837232
33.

The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene.

Soppe WJ, Jacobsen SE, Alonso-Blanco C, Jackson JP, Kakutani T, Koornneef M, Peeters AJ.

Mol Cell. 2000 Oct;6(4):791-802.

34.

The early-flowering mutant efs is involved in the autonomous promotion pathway of Arabidopsis thaliana.

Soppe WJ, Bentsink L, Koornneef M.

Development. 1999 Nov;126(21):4763-70.

35.

Factors affecting the inhibition by antisense RNA of granule-bound starch synthase gene expression in potato.

Kuipers AG, Soppe WJ, Jacobsen E, Visser RG.

Mol Gen Genet. 1995 Mar 20;246(6):745-55.

PMID:
7898444
36.

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