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Items: 1 to 50 of 57

1.

H3Africa AWI-Gen Collaborative Centre: a resource to study the interplay between genomic and environmental risk factors for cardiometabolic diseases in four sub-Saharan African countries.

Ramsay M, Crowther N, Tambo E, Agongo G, Baloyi V, Dikotope S, Gómez-Olivé X, Jaff N, Sorgho H, Wagner R, Khayeka-Wandabwa C, Choudhury A, Hazelhurst S, Kahn K, Lombard Z, Mukomana F, Soo C, Soodyall H, Wade A, Afolabi S, Agorinya I, Amenga-Etego L, Ali SA, Bognini JD, Boua RP, Debpuur C, Diallo S, Fato E, Kazienga A, Konkobo SZ, Kouraogo PM, Mashinya F, Micklesfield L, Nakanabo-Diallo S, Njamwea B, Nonterah E, Ouedraogo S, Pillay V, Somande AM, Tindana P, Twine R, Alberts M, Kyobutungi C, Norris SA, Oduro AR, Tinto H, Tollman S, Sankoh O.

Glob Health Epidemiol Genom. 2016 Nov 22;1:e20. doi: 10.1017/gheg.2016.17. eCollection 2016.

2.

Whole-genome sequencing for an enhanced understanding of genetic variation among South Africans.

Choudhury A, Ramsay M, Hazelhurst S, Aron S, Bardien S, Botha G, Chimusa ER, Christoffels A, Gamieldien J, Sefid-Dashti MJ, Joubert F, Meintjes A, Mulder N, Ramesar R, Rees J, Scholtz K, Sengupta D, Soodyall H, Venter P, Warnich L, Pepper MS.

Nat Commun. 2017 Dec 12;8(1):2062. doi: 10.1038/s41467-017-00663-9.

3.

Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago.

Schlebusch CM, Malmström H, Günther T, Sjödin P, Coutinho A, Edlund H, Munters AR, Vicente M, Steyn M, Soodyall H, Lombard M, Jakobsson M.

Science. 2017 Nov 3;358(6363):652-655. doi: 10.1126/science.aao6266. Epub 2017 Sep 28.

PMID:
28971970
4.

Adaptation to infectious disease exposure in indigenous Southern African populations.

Owers KA, Sjödin P, Schlebusch CM, Skoglund P, Soodyall H, Jakobsson M.

Proc Biol Sci. 2017 Apr 12;284(1852). pii: 20170226. doi: 10.1098/rspb.2017.0226.

5.

Corrigendum: Geographic population structure analysis of worldwide human populations infers their biogeographical origins.

Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Calò CM, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, Gaieski JB, Melendez C, Vilar MG, Owings AC, Gómez R, Fujita R, Santos FR, Comas D, Balanovsky O, Balanovska E, Zalloua P, Soodyall H, Pitchappan R, GaneshPrasad A, Hammer M, Matisoo-Smith L, Wells RS.

Nat Commun. 2016 Oct 31;7:13468. doi: 10.1038/ncomms13468. No abstract available.

6.

The disappearing San of southeastern Africa and their genetic affinities.

Schlebusch CM, Prins F, Lombard M, Jakobsson M, Soodyall H.

Hum Genet. 2016 Dec;135(12):1365-1373. Epub 2016 Sep 20.

7.

Could we offer mitochondrial donation or similar assisted reproductive technology to South African patients with mitochondrial DNA disease?

Meldau S, Riordan G, Van der Westhuizen F, Elson JL, Smuts I, Pepper MS, Soodyall H.

S Afr Med J. 2016 Feb 2;106(3):234-6. doi: 10.7196/SAMJ.2016.v106i3.10170.

PMID:
26915934
8.

Implications of direct-to-consumer whole-exome sequencing in South Africa.

Lombard Z, Baine F, Krause A, Lochan A, Macualay S, Spencer C, Aldous C, De Vries J, Fieggen K, Henderson B, Hoal E, Kinnear C, Kinsley N, September A, Urban M, Soodyall H, Pepper M, Ramsay M.

S Afr Med J. 2016 Jan 12;106(2):139-40. doi: 10.7196/SAMJ.2016.v106i2.10534.

PMID:
26821891
9.

A genomic portrait of haplotype diversity and signatures of selection in indigenous southern African populations.

Chimusa ER, Meintjies A, Tchanga M, Mulder N, Seoighe C, Soodyall H, Ramesar R.

PLoS Genet. 2015 Mar 26;11(3):e1005052. doi: 10.1371/journal.pgen.1005052. eCollection 2015 Mar. Erratum in: PLoS Genet. 2015 Jul;11(7):e1005363. Seioghe, Cathal [corrected to Seoighe, Cathal].

10.

Understanding the Implications of Mitochondrial DNA Variation in the Health of Black Southern African Populations: The 2014 Workshop.

van der Westhuizen FH, Sinxadi PZ, Dandara C, Smuts I, Riordan G, Meldau S, Malik AN, Sweeney MG, Tsai Y, Towers GW, Louw R, Gorman GS, Payne BA, Soodyall H, Pepper MS, Elson JL.

Hum Mutat. 2015 May;36(5):569-71. doi: 10.1002/humu.22789. No abstract available.

PMID:
25764011
11.

Ethical issues in genomic research on the African continent: experiences and challenges to ethics review committees.

Ramsay M, de Vries J, Soodyall H, Norris SA, Sankoh O; aH3Africa Consortium.

Hum Genomics. 2014 Aug 21;8:15. doi: 10.1186/s40246-014-0015-x.

12.

Natural selection for the Duffy-null allele in the recently admixed people of Madagascar.

Hodgson JA, Pickrell JK, Pearson LN, Quillen EE, Prista A, Rocha J, Soodyall H, Shriver MD, Perry GH.

Proc Biol Sci. 2014 Aug 22;281(1789):20140930. doi: 10.1098/rspb.2014.0930.

13.

Research capacity. Enabling the genomic revolution in Africa.

H3Africa Consortium, Rotimi C, Abayomi A, Abimiku A, Adabayeri VM, Adebamowo C, Adebiyi E, Ademola AD, Adeyemo A, Adu D, Affolabi D, Agongo G, Ajayi S, Akarolo-Anthony S, Akinyemi R, Akpalu A, Alberts M, Alonso Betancourt O, Alzohairy AM, Ameni G, Amodu O, Anabwani G, Andersen K, Arogundade F, Arulogun O, Asogun D, Bakare R, Balde N, Baniecki ML, Beiswanger C, Benkahla A, Bethke L, Boehnke M, Boima V, Brandful J, Brooks AI, Brosius FC, Brown C, Bucheton B, Burke DT, Burnett BG, Carrington-Lawrence S, Carstens N, Chisi J, Christoffels A, Cooper R, Cordell H, Crowther N, Croxton T, de Vries J, Derr L, Donkor P, Doumbia S, Duncanson A, Ekem I, El Sayed A, Engel ME, Enyaru JC, Everett D, Fadlelmola FM, Fakunle E, Fischbeck KH, Fischer A, Folarin O, Gamieldien J, Garry RF, Gaseitsiwe S, Gbadegesin R, Ghansah A, Giovanni M, Goesbeck P, Gomez-Olive FX, Grant DS, Grewal R, Guyer M, Hanchard NA, Happi CT, Hazelhurst S, Hennig BJ, Hertz- C, Fowler, Hide W, Hilderbrandt F, Hugo-Hamman C, Ibrahim ME, James R, Jaufeerally-Fakim Y, Jenkins C, Jentsch U, Jiang PP, Joloba M, Jongeneel V, Joubert F, Kader M, Kahn K, Kaleebu P, Kapiga SH, Kassim SK, Kasvosve I, Kayondo J, Keavney B, Kekitiinwa A, Khan SH, Kimmel P, King MC, Kleta R, Koffi M, Kopp J, Kretzler M, Kumuthini J, Kyobe S, Kyobutungi C, Lackland DT, Lacourciere KA, Landouré G, Lawlor R, Lehner T, Lesosky M, Levitt N, Littler K, Lombard Z, Loring JF, Lyantagaye S, Macleod A, Madden EB, Mahomva CR, Makani J, Mamven M, Marape M, Mardon G, Marshall P, Martin DP, Masiga D, Mason R, Mate-Kole M, Matovu E, Mayige M, Mayosi BM, Mbanya JC, McCurdy SA, McCarthy MI, McIlleron H, Mc'Ligeyo SO, Merle C, Mocumbi AO, Mondo C, Moran JV, Motala A, Moxey-Mims M, Mpoloka WS, Msefula CL, Mthiyane T, Mulder N, Mulugeta Gh, Mumba D, Musuku J, Nagdee M, Nash O, Ndiaye D, Nguyen AQ, Nicol M, Nkomazana O, Norris S, Nsangi B, Nyarko A, Nyirenda M, Obe E, Obiakor R, Oduro A, Ofori-Acquah SF, Ogah O, Ogendo S, Ohene-Frempong K, Ojo A, Olanrewaju T, Oli J, Osafo C, Ouwe Missi Oukem-Boyer O, Ovbiagele B, Owen A, Owolabi MO, Owolabi L, Owusu-Dabo E, Pare G, Parekh R, Patterton HG, Penno MB, Peterson J, Pieper R, Plange-Rhule J, Pollak M, Puzak J, Ramesar RS, Ramsay M, Rasooly R, Reddy S, Sabeti PC, Sagoe K, Salako T, Samassékou O, Sandhu MS, Sankoh O, Sarfo FS, Sarr M, Shaboodien G, Sidibe I, Simo G, Simuunza M, Smeeth L, Sobngwi E, Soodyall H, Sorgho H, Sow Bah O, Srinivasan S, Stein DJ, Susser ES, Swanepoel C, Tangwa G, Tareila A, Tastan Bishop O, Tayo B, Tiffin N, Tinto H, Tobin E, Tollman SM, Traoré M, Treadwell MJ, Troyer J, Tsimako-Johnstone M, Tukei V, Ulasi I, Ulenga N, van Rooyen B, Wachinou AP, Waddy SP, Wade A, Wayengera M, Whitworth J, Wideroff L, Winkler CA, Winnicki S, Wonkam A, Yewondwos M, sen T, Yozwiak N, Zar H.

Science. 2014 Jun 20;344(6190):1346-8. doi: 10.1126/science.1251546. No abstract available.

14.

Geographic population structure analysis of worldwide human populations infers their biogeographical origins.

Elhaik E, Tatarinova T, Chebotarev D, Piras IS, Maria Calò C, De Montis A, Atzori M, Marini M, Tofanelli S, Francalacci P, Pagani L, Tyler-Smith C, Xue Y, Cucca F, Schurr TG, Gaieski JB, Melendez C, Vilar MG, Owings AC, Gómez R, Fujita R, Santos FR, Comas D, Balanovsky O, Balanovska E, Zalloua P, Soodyall H, Pitchappan R, Ganeshprasad A, Hammer M, Matisoo-Smith L, Wells RS; Genographic Consortium.

Nat Commun. 2014 Apr 29;5:3513. doi: 10.1038/ncomms4513.

15.

Lactase persistence alleles reveal partial East African ancestry of southern African Khoe pastoralists.

Breton G, Schlebusch CM, Lombard M, Sjödin P, Soodyall H, Jakobsson M.

Curr Biol. 2014 Apr 14;24(8):852-8. doi: 10.1016/j.cub.2014.02.041. Epub 2014 Apr 3.

16.

Professor Trefor Jenkins: a tribute.

Kromberg JG, Ramsay M, Krause A, Soodyall H.

S Afr Med J. 2013 Oct 16;103(12 Suppl 1):956-1034. doi: 10.7196/samj.7627. No abstract available.

PMID:
24300658
17.

Lemba origins revisited: tracing the ancestry of Y chromosomes in South African and Zimbabwean Lemba.

Soodyall H.

S Afr Med J. 2013 Oct 11;103(12 Suppl 1):1009-13. doi: 10.7196/samj.7297.

PMID:
24300649
19.

MtDNA control region variation affirms diversity and deep sub-structure in populations from southern Africa.

Schlebusch CM, Lombard M, Soodyall H.

BMC Evol Biol. 2013 Feb 27;13:56. doi: 10.1186/1471-2148-13-56.

20.

Genomic variation in seven Khoe-San groups reveals adaptation and complex African history.

Schlebusch CM, Skoglund P, Sjödin P, Gattepaille LM, Hernandez D, Jay F, Li S, De Jongh M, Singleton A, Blum MG, Soodyall H, Jakobsson M.

Science. 2012 Oct 19;338(6105):374-9. doi: 10.1126/science.1227721. Epub 2012 Sep 20.

21.

Age of the association between Helicobacter pylori and man.

Moodley Y, Linz B, Bond RP, Nieuwoudt M, Soodyall H, Schlebusch CM, Bernhöft S, Hale J, Suerbaum S, Mugisha L, van der Merwe SW, Achtman M.

PLoS Pathog. 2012;8(5):e1002693. doi: 10.1371/journal.ppat.1002693. Epub 2012 May 10.

22.

Africa: the next frontier for human disease gene discovery?

Ramsay M, Tiemessen CT, Choudhury A, Soodyall H.

Hum Mol Genet. 2011 Oct 15;20(R2):R214-20. doi: 10.1093/hmg/ddr401. Epub 2011 Sep 9. Review.

PMID:
21908518
23.

An early divergence of KhoeSan ancestors from those of other modern humans is supported by an ABC-based analysis of autosomal resequencing data.

Veeramah KR, Wegmann D, Woerner A, Mendez FL, Watkins JC, Destro-Bisol G, Soodyall H, Louie L, Hammer MF.

Mol Biol Evol. 2012 Feb;29(2):617-30. doi: 10.1093/molbev/msr212. Epub 2011 Sep 1.

24.

Different contributions of ancient mitochondrial and Y-chromosomal lineages in 'Karretjie people' of the Great Karoo in South Africa.

Schlebusch CM, de Jongh M, Soodyall H.

J Hum Genet. 2011 Sep;56(9):623-30. doi: 10.1038/jhg.2011.71. Epub 2011 Jul 21.

PMID:
21776000
25.

Increased resolution of Y chromosome haplogroup T defines relationships among populations of the Near East, Europe, and Africa.

Mendez FL, Karafet TM, Krahn T, Ostrer H, Soodyall H, Hammer MF.

Hum Biol. 2011 Feb;83(1):39-53. doi: 10.3378/027.083.0103.

PMID:
21453003
26.

Genetic variation of 15 autosomal STR loci in various populations from southern Africa.

Schlebusch CM, Soodyall H, Jakobsson M.

Forensic Sci Int Genet. 2012 Jan;6(1):e20-1. doi: 10.1016/j.fsigen.2010.12.013. Epub 2011 Feb 1. No abstract available.

PMID:
21282079
27.

Development of a single base extension method to resolve Y chromosome haplogroups in sub-Saharan African populations.

Naidoo T, Schlebusch CM, Makkan H, Patel P, Mahabeer R, Erasmus JC, Soodyall H.

Investig Genet. 2010 Sep 1;1(1):6. doi: 10.1186/2041-2223-1-6.

28.

LTBP2 and CYP1B1 mutations and associated ocular phenotypes in the Roma/Gypsy founder population.

Azmanov DN, Dimitrova S, Florez L, Cherninkova S, Draganov D, Morar B, Saat R, Juan M, Arostegui JI, Ganguly S, Soodyall H, Chakrabarti S, Padh H, López-Nevot MA, Chernodrinska V, Anguelov B, Majumder P, Angelova L, Kaneva R, Mackey DA, Tournev I, Kalaydjieva L.

Eur J Hum Genet. 2011 Mar;19(3):326-33. doi: 10.1038/ejhg.2010.181. Epub 2010 Nov 17.

29.

Report on the 6th African Society of Human Genetics (AfSHG) Meeting, March 12-15, 2009, Yaounde, Cameroon.

Sirugo G, Williams SM, Royal CD, Newport MJ, Hennig BJ, Mariani-Costantini R, Buonaguro FM, Velez Edwards DR, Ibrahim M, Soodyall H, Wonkam A, Ramesar R, Rotimi CN.

Am J Trop Med Hyg. 2010 Aug;83(2):226-9. doi: 10.4269/ajtmh.2010.10-0208.

30.

SNaPshot minisequencing to resolve mitochondrial macro-haplogroups found in Africa.

Schlebusch CM, Naidoo T, Soodyall H.

Electrophoresis. 2009 Nov;30(21):3657-64. doi: 10.1002/elps.200900197.

PMID:
19810027
31.

Genetic studies of African populations: an overview on disease susceptibility and response to vaccines and therapeutics.

Sirugo G, Hennig BJ, Adeyemo AA, Matimba A, Newport MJ, Ibrahim ME, Ryckman KK, Tacconelli A, Mariani-Costantini R, Novelli G, Soodyall H, Rotimi CN, Ramesar RS, Tishkoff SA, Williams SM.

Hum Genet. 2008 Jul;123(6):557-98. doi: 10.1007/s00439-008-0511-y. Epub 2008 May 30. Review. Erratum in: Hum Genet. 2008 Sep;124(2):195.

PMID:
18512079
32.

The dawn of human matrilineal diversity.

Behar DM, Villems R, Soodyall H, Blue-Smith J, Pereira L, Metspalu E, Scozzari R, Makkan H, Tzur S, Comas D, Bertranpetit J, Quintana-Murci L, Tyler-Smith C, Wells RS, Rosset S; Genographic Consortium.

Am J Hum Genet. 2008 May;82(5):1130-40. doi: 10.1016/j.ajhg.2008.04.002. Epub 2008 Apr 24.

33.

Contrasting signatures of population growth for mitochondrial DNA and Y chromosomes among human populations in Africa.

Pilkington MM, Wilder JA, Mendez FL, Cox MP, Woerner A, Angui T, Kingan S, Mobasher Z, Batini C, Destro-Bisol G, Soodyall H, Strassmann BI, Hammer MF.

Mol Biol Evol. 2008 Mar;25(3):517-25. Epub 2007 Dec 18.

PMID:
18093995
34.

Inferring human population sizes, divergence times and rates of gene flow from mitochondrial, X and Y chromosome resequencing data.

Garrigan D, Kingan SB, Pilkington MM, Wilder JA, Cox MP, Soodyall H, Strassmann B, Destro-Bisol G, de Knijff P, Novelletto A, Friedlaender J, Hammer MF.

Genetics. 2007 Dec;177(4):2195-207.

35.

A South African mixed ancestry family with Huntington disease-like 2: clinical and genetic features.

Bardien S, Abrahams F, Soodyall H, van der Merwe L, Greenberg J, Brink T, Carr J.

Mov Disord. 2007 Oct 31;22(14):2083-9.

PMID:
17708569
36.

Contrasting patterns of Y chromosome and mtDNA variation in Africa: evidence for sex-biased demographic processes.

Wood ET, Stover DA, Ehret C, Destro-Bisol G, Spedini G, McLeod H, Louie L, Bamshad M, Strassmann BI, Soodyall H, Hammer MF.

Eur J Hum Genet. 2005 Jul;13(7):867-76.

37.

Y chromosome evidence for a founder effect in Ashkenazi Jews.

Nebel A, Filon D, Faerman M, Soodyall H, Oppenheim A.

Eur J Hum Genet. 2005 Mar;13(3):388-91.

38.

Genealogy and genes: tracing the founding fathers of Tristan da Cunha.

Soodyall H, Nebel A, Morar B, Jenkins T.

Eur J Hum Genet. 2003 Sep;11(9):705-9.

39.

Mitochondrial DNA evidence for admixed origins of central Siberian populations.

Pakendorf B, Wiebe V, Tarskaia LA, Spitsyn VA, Soodyall H, Rodewald A, Stoneking M.

Am J Phys Anthropol. 2003 Mar;120(3):211-24. Review.

PMID:
12567375
40.

Genetic substructure in South African Bantu-speakers: evidence from autosomal DNA and Y-chromosome studies.

Lane AB, Soodyall H, Arndt S, Ratshikhopha ME, Jonker E, Freeman C, Young L, Morar B, Toffie L.

Am J Phys Anthropol. 2002 Oct;119(2):175-85.

PMID:
12237937
41.

A global perspective on genetic variation at the ADH genes reveals unusual patterns of linkage disequilibrium and diversity.

Osier MV, Pakstis AJ, Soodyall H, Comas D, Goldman D, Odunsi A, Okonofua F, Parnas J, Schulz LO, Bertranpetit J, Bonne-Tamir B, Lu RB, Kidd JR, Kidd KK.

Am J Hum Genet. 2002 Jul;71(1):84-99. Epub 2002 Jun 5.

42.

Y-chromosomal evidence for a strong reduction in male population size of Yakuts.

Pakendorf B, Morar B, Tarskaia LA, Kayser M, Soodyall H, Rodewald A, Stoneking M.

Hum Genet. 2002 Feb;110(2):198-200. Epub 2002 Jan 15. No abstract available.

PMID:
11935328
43.

A platform for genomics in South Africa.

Hide W, Mizrahi V, Venkatesh B, Brenner S, Simpson A, Blatch G, Soodyall H, Denby K, Wingfield M, Wingfield B, van Helden P, Ramesar R, Dorrington R, Kelso J, Oppon E, Goyvaerts E, Ramsay M, de Villiers E, van Heerden C, Allsopp B, Seoighe C.

S Afr Med J. 2001 Dec;91(12):1006-7. No abstract available.

PMID:
11845589
44.

Hierarchical patterns of global human Y-chromosome diversity.

Hammer MF, Karafet TM, Redd AJ, Jarjanazi H, Santachiara-Benerecetti S, Soodyall H, Zegura SL.

Mol Biol Evol. 2001 Jul;18(7):1189-203.

PMID:
11420360
45.

Mitochondrial mutation rate revisited: hot spots and polymorphism.

Jazin E, Soodyall H, Jalonen P, Lindholm E, Stoneking M, Gyllensten U.

Nat Genet. 1998 Feb;18(2):109-10. No abstract available.

PMID:
9462737
46.

Alu insertion polymorphisms and human evolution: evidence for a larger population size in Africa.

Stoneking M, Fontius JJ, Clifford SL, Soodyall H, Arcot SS, Saha N, Jenkins T, Tahir MA, Deininger PL, Batzer MA.

Genome Res. 1997 Nov;7(11):1061-71.

47.

The founding mitochondrial DNA lineages of Tristan da Cunha Islanders.

Soodyall H, Jenkins T, Mukherjee A, du Toit E, Roberts DF, Stoneking M.

Am J Phys Anthropol. 1997 Oct;104(2):157-66.

PMID:
9386823
48.

Extent of heterogeneity in mitochondrial DNA of sub-Saharan African populations.

Melton T, Ginther C, Sensabaugh G, Soodyall H, Stoneking M.

J Forensic Sci. 1997 Jul;42(4):582-92.

PMID:
9243823
49.

Human evolution and the mitochondrial genome.

Stoneking M, Soodyall H.

Curr Opin Genet Dev. 1996 Dec;6(6):731-6. Review.

PMID:
8994844
50.

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