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Items: 1 to 50 of 233

1.

Non-carbon loss long-term continuous lactic acid production from mixed sugars using thermophilic Enterococcus faecium QU 50.

Abdel-Rahman MA, Tan J, Tashiro Y, Zendo T, Sakai K, Sonomoto K.

Biotechnol Bioeng. 2020 Feb 22. doi: 10.1002/bit.27313. [Epub ahead of print]

PMID:
32086810
2.

Mosaic Cooperativity in Slow Polypeptide Topological Isomerization Revealed by Residue-Specific NMR Thermodynamic Analysis.

Fujinami D, Motomura H, Oshima H, Mahin AA, Elsayed KM, Zendo T, Sugita Y, Sonomoto K, Kohda D.

J Phys Chem Lett. 2020 Mar 5;11(5):1934-1939. doi: 10.1021/acs.jpclett.9b03591. Epub 2020 Feb 25.

PMID:
32067463
3.

Smart fermentation engineering for butanol production: designed biomass and consolidated bioprocessing systems.

Zhao T, Tashiro Y, Sonomoto K.

Appl Microbiol Biotechnol. 2019 Dec;103(23-24):9359-9371. doi: 10.1007/s00253-019-10198-2. Epub 2019 Nov 13. Review.

PMID:
31720773
4.

Relation between cell-bound exopolysaccharide production via plasmid-encoded genes and rugose colony morphology in the probiotic Lactobacillus brevis KB290.

Fukao M, Zendo T, Inoue T, Fuke N, Moriuchi T, Yamane Y, Nakayama J, Sonomoto K, Fukaya T.

Anim Sci J. 2019 Dec;90(12):1575-1580. doi: 10.1111/asj.13297. Epub 2019 Oct 8.

PMID:
31593351
5.

The association between gut microbiota development and maturation of intestinal bile acid metabolism in the first 3 y of healthy Japanese infants.

Tanaka M, Sanefuji M, Morokuma S, Yoden M, Momoda R, Sonomoto K, Ogawa M, Kato K, Nakayama J.

Gut Microbes. 2020;11(2):205-216. doi: 10.1080/19490976.2019.1650997. Epub 2019 Sep 24.

PMID:
31550982
6.

Constitutive expression of phosphoketolase, a key enzyme for metabolic shift from homo- to heterolactic fermentation in Enterococcus mundtii QU 25.

Nabeta K, Watanabe S, Chibazakura T, Zendo T, Sonomoto K, Shimizu-Kadota M, Yoshikawa H.

Biosci Microbiota Food Health. 2019;38(3):111-114. doi: 10.12938/bmfh.18-030. Epub 2019 May 8.

7.

Plasmid-encoded glycosyltransferase operon is responsible for exopolysaccharide production, cell aggregation, and bile resistance in a probiotic strain, Lactobacillus brevis KB290.

Fukao M, Zendo T, Inoue T, Nakayama J, Suzuki S, Fukaya T, Yajima N, Sonomoto K.

J Biosci Bioeng. 2019 Oct;128(4):391-397. doi: 10.1016/j.jbiosc.2019.04.008. Epub 2019 May 22.

PMID:
31126721
8.

Complete Genome Sequence of Enterococcus faecium QU50, a Thermophilic Lactic Acid Bacterium Capable of Metabolizing Xylose.

Abe K, Kanesaki Y, Abdel-Rahman MA, Watanabe S, Zendo T, Chibazakura T, Shimizu-Kadota M, Sonomoto K, Yoshikawa H.

Microbiol Resour Announc. 2019 May 23;8(21). pii: e00413-19. doi: 10.1128/MRA.00413-19.

9.

Skeletal unloading reduces cluster of differentiation (CD) 38 expression in the bone marrow and osteoblasts of mice.

Moridera K, Uchida S, Tanaka S, Menuki K, Utsunomiya H, Yamaoka K, Sonomoto K, Tanaka Y, Sakai A.

J Orthop Sci. 2020 Mar;25(2):331-337. doi: 10.1016/j.jos.2019.03.023. Epub 2019 May 7.

10.

Author Correction: Diversity in gut bacterial community of school-age children in Asia.

Nakayama J, Watanabe K, Jiang J, Matsuda K, Chao SH, Haryono P, La-Ongkham O, Sarwoko MA, Sujaya IN, Zhao L, Chen KT, Chen YP, Chiu HH, Hidaka T, Huang NX, Kiyohara C, Kurakawa T, Sakamoto N, Sonomoto K, Tashiro K, Tsuji H, Chen MJ, Leelavatcharamas V, Liao CC, Nitisinprasert S, Rahayu ES, Ren FZ, Tsai YC, Lee YK.

Sci Rep. 2019 Apr 25;9(1):6530. doi: 10.1038/s41598-019-42780-z.

11.

Semi-hydrolysate of paper pulp without pretreatment enables a consolidated fermentation system with in situ product recovery for the production of butanol.

Zhao T, Yasuda K, Tashiro Y, Darmayanti RF, Sakai K, Sonomoto K.

Bioresour Technol. 2019 Apr;278:57-65. doi: 10.1016/j.biortech.2019.01.043. Epub 2019 Jan 11.

PMID:
30677699
12.

The lantibiotic nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states.

Fujinami D, -Mahin AA, Elsayed KM, Islam MR, Nagao JI, Roy U, Momin S, Zendo T, Kohda D, Sonomoto K.

Commun Biol. 2018 Sep 25;1:150. doi: 10.1038/s42003-018-0150-3. eCollection 2018.

13.

Recognizability of heterologous co-chaperones with Streptococcus intermedius DnaK and Escherichia coli DnaK.

Tomoyasu T, Tsuruno K, Tanatsugu R, Miyazaki A, Kondo H, Tabata A, Whiley RA, Sonomoto K, Nagamune H.

Microbiol Immunol. 2018 Nov;62(11):681-693. doi: 10.1111/1348-0421.12651. Epub 2018 Nov 5.

PMID:
30239035
14.

Circular and Leaderless Bacteriocins: Biosynthesis, Mode of Action, Applications, and Prospects.

Perez RH, Zendo T, Sonomoto K.

Front Microbiol. 2018 Sep 4;9:2085. doi: 10.3389/fmicb.2018.02085. eCollection 2018. Review.

15.

Novel biobutanol fermentation at a large extractant volume ratio using immobilized Clostridium saccharoperbutylacetonicum N1-4.

Darmayanti RF, Tashiro Y, Noguchi T, Gao M, Sakai K, Sonomoto K.

J Biosci Bioeng. 2018 Dec;126(6):750-757. doi: 10.1016/j.jbiosc.2018.06.006. Epub 2018 Jul 14.

PMID:
30017707
16.

Urban Diets Linked to Gut Microbiome and Metabolome Alterations in Children: A Comparative Cross-Sectional Study in Thailand.

Kisuse J, La-Ongkham O, Nakphaichit M, Therdtatha P, Momoda R, Tanaka M, Fukuda S, Popluechai S, Kespechara K, Sonomoto K, Lee YK, Nitisinprasert S, Nakayama J.

Front Microbiol. 2018 Jun 22;9:1345. doi: 10.3389/fmicb.2018.01345. eCollection 2018.

17.

Characterisation of the action mechanism of a Lactococcus-specific bacteriocin, lactococcin Z.

Daba GM, Ishibashi N, Gong X, Taki H, Yamashiro K, Lim YY, Zendo T, Sonomoto K.

J Biosci Bioeng. 2018 Nov;126(5):603-610. doi: 10.1016/j.jbiosc.2018.05.018. Epub 2018 Jul 6.

PMID:
29929768
18.

Semi-hydrolysis with low enzyme loading leads to highly effective butanol fermentation.

Zhao T, Tashiro Y, Zheng J, Sakai K, Sonomoto K.

Bioresour Technol. 2018 Sep;264:335-342. doi: 10.1016/j.biortech.2018.05.056. Epub 2018 May 16.

PMID:
29886308
19.

Free lactic acid production under acidic conditions by lactic acid bacteria strains: challenges and future prospects.

Singhvi M, Zendo T, Sonomoto K.

Appl Microbiol Biotechnol. 2018 Jul;102(14):5911-5924. doi: 10.1007/s00253-018-9092-4. Epub 2018 May 26. Review.

PMID:
29804138
20.

Greener L-lactic acid production through in situ extractive fermentation by an acid-tolerant Lactobacillus strain.

Singhvi M, Zendo T, Gokhale D, Sonomoto K.

Appl Microbiol Biotechnol. 2018 Aug;102(15):6425-6435. doi: 10.1007/s00253-018-9084-4. Epub 2018 May 24.

PMID:
29799089
21.

Diversified transporters and pathways for bacteriocin secretion in gram-positive bacteria.

Zheng S, Sonomoto K.

Appl Microbiol Biotechnol. 2018 May;102(10):4243-4253. doi: 10.1007/s00253-018-8917-5. Epub 2018 Mar 20. Review.

PMID:
29560521
22.

Evaluation of leader peptides that affect the secretory ability of a multiple bacteriocin transporter, EnkT.

Sushida H, Ishibashi N, Zendo T, Wilaipun P, Leelawatcharamas V, Nakayama J, Sonomoto K.

J Biosci Bioeng. 2018 Jul;126(1):23-29. doi: 10.1016/j.jbiosc.2018.01.015. Epub 2018 Feb 13.

PMID:
29452934
23.

Metabolic dependent and independent pH-drop shuts down VirSR quorum sensing in Clostridium perfringens.

Adachi K, Ohtani K, Kawano M, Singh RP, Yousuf B, Sonomoto K, Shimizu T, Nakayama J.

J Biosci Bioeng. 2018 May;125(5):525-531. doi: 10.1016/j.jbiosc.2017.12.019. Epub 2018 Jan 17.

PMID:
29373309
24.

ATPase activity regulation by leader peptide processing of ABC transporter maturation and secretion protein, NukT, for lantibiotic nukacin ISK-1.

Zheng S, Nagao JI, Nishie M, Zendo T, Sonomoto K.

Appl Microbiol Biotechnol. 2018 Jan;102(2):763-772. doi: 10.1007/s00253-017-8645-2. Epub 2017 Nov 22.

PMID:
29167920
25.

Signatures in the gut microbiota of Japanese infants who developed food allergies in early childhood.

Tanaka M, Korenori Y, Washio M, Kobayashi T, Momoda R, Kiyohara C, Kuroda A, Saito Y, Sonomoto K, Nakayama J.

FEMS Microbiol Ecol. 2017 Aug 1;93(8). doi: 10.1093/femsec/fix099.

PMID:
28903469
26.

Functional analysis of the biosynthetic gene cluster required for immunity and secretion of a novel Lactococcus-specific bacteriocin, lactococcin Z.

Daba GM, Ishibashi N, Zendo T, Sonomoto K.

J Appl Microbiol. 2017 Nov;123(5):1124-1132. doi: 10.1111/jam.13564. Epub 2017 Sep 27.

PMID:
28815820
27.

Stimulation of d- and l-lactate dehydrogenases transcriptional levels in presence of diammonium hydrogen phosphate resulting to enhanced lactic acid production by Lactobacillus strain.

Singhvi M, Zendo T, Iida H, Gokhale D, Sonomoto K.

J Biosci Bioeng. 2017 Dec;124(6):674-679. doi: 10.1016/j.jbiosc.2017.07.009. Epub 2017 Aug 8.

PMID:
28800908
28.

In vitro synergistic activities of cefazolin and nisin A against mastitis pathogens.

Kitazaki K, Koga S, Nagatoshi K, Kuwano K, Zendo T, Nakayama J, Sonomoto K, Ano H, Katamoto H.

J Vet Med Sci. 2017 Sep 12;79(9):1472-1479. doi: 10.1292/jvms.17-0180. Epub 2017 Jul 29.

29.

Impact of Westernized Diet on Gut Microbiota in Children on Leyte Island.

Nakayama J, Yamamoto A, Palermo-Conde LA, Higashi K, Sonomoto K, Tan J, Lee YK.

Front Microbiol. 2017 Feb 14;8:197. doi: 10.3389/fmicb.2017.00197. eCollection 2017.

30.

Mutations near the cleavage site of enterocin NKR-5-3B prepeptide reveal new insights into its biosynthesis.

Perez RH, Sugino H, Ishibashi N, Zendo T, Wilaipun P, Leelawatcharamas V, Nakayama J, Sonomoto K.

Microbiology. 2017 Apr;163(4):431-441. doi: 10.1099/mic.0.000435. Epub 2017 Apr 12.

PMID:
28113050
31.

LiaRS reporter assay: A simple tool to identify lipid II binding moieties in lantibiotic nukacin ISK-1.

Elsayed KM, Islam MR, Abdullah-Al-Mahin, Nagao JI, Zendo T, Sonomoto K.

J Biosci Bioeng. 2017 Mar;123(3):398-401. doi: 10.1016/j.jbiosc.2016.10.002. Epub 2016 Nov 14.

PMID:
27856233
32.

Cationic Lipid Content in Liposome-Encapsulated Nisin Improves Sustainable Bactericidal Activity against Streptococcus mutans.

Yamakami K, Tsumori H, Shimizu Y, Sakurai Y, Nagatoshi K, Sonomoto K.

Open Dent J. 2016 Jul 29;10:360-6. doi: 10.2174/1874210616021001360. eCollection 2016.

33.

LnqR, a TetR-family transcriptional regulator, positively regulates lacticin Q production in Lactococcus lactis QU 5.

Iwatani S, Ishibashi N, Flores FP, Zendo T, Nakayama J, Sonomoto K.

FEMS Microbiol Lett. 2016 Sep;363(18). pii: fnw200. doi: 10.1093/femsle/fnw200. Epub 2016 Aug 21.

PMID:
27549303
34.

Opportunities to overcome the current limitations and challenges for efficient microbial production of optically pure lactic acid.

Abdel-Rahman MA, Sonomoto K.

J Biotechnol. 2016 Oct 20;236:176-92. doi: 10.1016/j.jbiotec.2016.08.008. Epub 2016 Aug 12. Review.

PMID:
27527396
35.

Two-Component Systems Involved in Susceptibility to Nisin A in Streptococcus pyogenes.

Kawada-Matsuo M, Tatsuno I, Arii K, Zendo T, Oogai Y, Noguchi K, Hasegawa T, Sonomoto K, Komatsuzawa H.

Appl Environ Microbiol. 2016 Sep 16;82(19):5930-9. doi: 10.1128/AEM.01897-16. Print 2016 Oct 1.

36.

Alleviation of harmful effect in stillage reflux in food waste ethanol fermentation based on metabolic and side-product accumulation regulation.

Ma H, Yang J, Jia Y, Wang Q, Ma X, Sonomoto K.

Bioresour Technol. 2016 Oct;218:463-8. doi: 10.1016/j.biortech.2016.06.123. Epub 2016 Jul 1.

PMID:
27394991
37.

Spontaneous Differentiation of Human Mesenchymal Stem Cells on Poly-Lactic-Co-Glycolic Acid Nano-Fiber Scaffold.

Sonomoto K, Yamaoka K, Kaneko H, Yamagata K, Sakata K, Zhang X, Kondo M, Zenke Y, Sabanai K, Nakayamada S, Sakai A, Tanaka Y.

PLoS One. 2016 Apr 7;11(4):e0153231. doi: 10.1371/journal.pone.0153231. eCollection 2016.

38.

Stillage reflux in food waste ethanol fermentation and its by-product accumulation.

Ma H, Yang J, Jia Y, Wang Q, Tashiro Y, Sonomoto K.

Bioresour Technol. 2016 Jun;209:254-8. doi: 10.1016/j.biortech.2016.02.127. Epub 2016 Mar 4.

PMID:
26974357
39.

High acetone-butanol-ethanol production in pH-stat co-feeding of acetate and glucose.

Gao M, Tashiro Y, Wang Q, Sakai K, Sonomoto K.

J Biosci Bioeng. 2016 Aug;122(2):176-82. doi: 10.1016/j.jbiosc.2016.01.013. Epub 2016 Feb 23.

PMID:
26928043
40.

Nutrition-adaptive control of multiple-bacteriocin production by Weissella hellenica QU 13.

Masuda Y, Perez RH, Zendo T, Sonomoto K.

J Appl Microbiol. 2016 Jan;120(1):70-9. doi: 10.1111/jam.12997.

41.

Functional Analysis of Genes Involved in the Biosynthesis of Enterocin NKR-5-3B, a Novel Circular Bacteriocin.

Perez RH, Ishibashi N, Inoue T, Himeno K, Masuda Y, Sawa N, Zendo T, Wilaipun P, Leelawatcharamas V, Nakayama J, Sonomoto K.

J Bacteriol. 2015 Oct 26;198(2):291-300. doi: 10.1128/JB.00692-15. Print 2016 Jan 15.

42.

Rationale design of quorum-quenching peptides that target the VirSR system of Clostridium perfringens.

Singh RP, Okubo K, Ohtani K, Adachi K, Sonomoto K, Nakayama J.

FEMS Microbiol Lett. 2015 Nov;362(22). pii: fnv188. doi: 10.1093/femsle/fnv188. Epub 2015 Oct 5.

PMID:
26443835
43.

Molecular characterization of the genes involved in the secretion and immunity of lactococcin Q, a two-peptide bacteriocin produced by Lactococcus lactis QU 4.

Ishibashi N, Zendo T, Koga S, Shigeri Y, Sonomoto K.

Microbiology. 2015 Nov;161(11):2069-78. doi: 10.1099/mic.0.000157. Epub 2015 Aug 24.

PMID:
26306611
44.

Identification, Characterization, and Three-Dimensional Structure of the Novel Circular Bacteriocin, Enterocin NKR-5-3B, from Enterococcus faecium.

Himeno K, Rosengren KJ, Inoue T, Perez RH, Colgrave ML, Lee HS, Chan LY, Henriques ST, Fujita K, Ishibashi N, Zendo T, Wilaipun P, Nakayama J, Leelawatcharamas V, Jikuya H, Craik DJ, Sonomoto K.

Biochemistry. 2015 Aug 11;54(31):4863-76. doi: 10.1021/acs.biochem.5b00196. Epub 2015 Jul 31.

PMID:
26174911
45.

L-Lactic acid production from glycerol coupled with acetic acid metabolism by Enterococcus faecalis without carbon loss.

Murakami N, Oba M, Iwamoto M, Tashiro Y, Noguchi T, Bonkohara K, Abdel-Rahman MA, Zendo T, Shimoda M, Sakai K, Sonomoto K.

J Biosci Bioeng. 2016 Jan;121(1):89-95. doi: 10.1016/j.jbiosc.2015.05.009. Epub 2015 Jul 11.

PMID:
26168904
46.

Cyclodepsipeptides produced by actinomycetes inhibit cyclic-peptide-mediated quorum sensing in Gram-positive bacteria.

Desouky SE, Shojima A, Singh RP, Matsufuji T, Igarashi Y, Suzuki T, Yamagaki T, Okubo K, Ohtani K, Sonomoto K, Nakayama J.

FEMS Microbiol Lett. 2015 Jul;362(14). pii: fnv109. doi: 10.1093/femsle/fnv109. Epub 2015 Jul 5.

PMID:
26149266
47.

Identification of Lactococcus-Specific Bacteriocins Produced by Lactococcal Isolates, and the Discovery of a Novel Bacteriocin, Lactococcin Z.

Ishibashi N, Seto H, Koga S, Zendo T, Sonomoto K.

Probiotics Antimicrob Proteins. 2015 Sep;7(3):222-31. doi: 10.1007/s12602-015-9196-4.

PMID:
26093857
48.

[Mesenchymal stem cells for the treatment and repair of inflammatory arthritis].

Tanaka Y, Sonomoto K, Kondo M, Oshita K, Zhang XM, Fukuyo S, Yamaoka K.

Nihon Rinsho Meneki Gakkai Kaishi. 2015;38(2):86-92. doi: 10.2177/jsci.38.86. Review. Japanese.

49.

In vitro catalytic activity of N-terminal and C-terminal domains in NukM, the post-translational modification enzyme of nukacin ISK-1.

Shimafuji C, Noguchi M, Nishie M, Nagao J, Shioya K, Zendo T, Nakayama J, Sonomoto K.

J Biosci Bioeng. 2015 Dec;120(6):624-9. doi: 10.1016/j.jbiosc.2015.03.020. Epub 2015 May 9.

PMID:
25971839
50.

Enterocin F4-9, a Novel O-Linked Glycosylated Bacteriocin.

Maky MA, Ishibashi N, Zendo T, Perez RH, Doud JR, Karmi M, Sonomoto K.

Appl Environ Microbiol. 2015 Jul;81(14):4819-26. doi: 10.1128/AEM.00940-15. Epub 2015 May 8.

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