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Items: 1 to 50 of 70

1.

Gut microbiome transition across a lifestyle gradient in Himalaya.

Jha AR, Davenport ER, Gautam Y, Bhandari D, Tandukar S, Ng KM, Fragiadakis GK, Holmes S, Gautam GP, Leach J, Sherchand JB, Bustamante CD, Sonnenburg JL.

PLoS Biol. 2018 Nov 15;16(11):e2005396. doi: 10.1371/journal.pbio.2005396. eCollection 2018 Nov.

2.

Clostridioides difficile uses amino acids associated with gut microbial dysbiosis in a subset of patients with diarrhea.

Battaglioli EJ, Hale VL, Chen J, Jeraldo P, Ruiz-Mojica C, Schmidt BA, Rekdal VM, Till LM, Huq L, Smits SA, Moor WJ, Jones-Hall Y, Smyrk T, Khanna S, Pardi DS, Grover M, Patel R, Chia N, Nelson H, Sonnenburg JL, Farrugia G, Kashyap PC.

Sci Transl Med. 2018 Oct 24;10(464). pii: eaam7019. doi: 10.1126/scitranslmed.aam7019.

PMID:
30355801
3.

Considerations for Best Practices in Studies of Fiber or Other Dietary Components and the Intestinal Microbiome.

Klurfeld DM, Davis CD, Karp RW, Allen-Vercoe E, Chang EB, Chassaing B, Fahey GC, Hamaker BR, Holscher HD, Lampe JW, Marette A, Martens E, O'Keefe SJ, Rose DJ, Saarela M, Schneeman BO, Slavin JL, Sonnenburg JL, Swanson KS, Wu GD, Lynch CJ.

Am J Physiol Endocrinol Metab. 2018 Aug 21. doi: 10.1152/ajpendo.00058.2018. [Epub ahead of print]

PMID:
30130151
4.

Links between environment, diet, and the hunter-gatherer microbiome.

Fragiadakis GK, Smits SA, Sonnenburg ED, Van Treuren W, Reid G, Knight R, Manjurano A, Changalucha J, Dominguez-Bello MG, Leach J, Sonnenburg JL.

Gut Microbes. 2018 Aug 17:1-12. doi: 10.1080/19490976.2018.1494103. [Epub ahead of print]

PMID:
30118385
5.

A Gut Commensal-Produced Metabolite Mediates Colonization Resistance to Salmonella Infection.

Jacobson A, Lam L, Rajendram M, Tamburini F, Honeycutt J, Pham T, Van Treuren W, Pruss K, Stabler SR, Lugo K, Bouley DM, Vilches-Moure JG, Smith M, Sonnenburg JL, Bhatt AS, Huang KC, Monack D.

Cell Host Microbe. 2018 Aug 8;24(2):296-307.e7. doi: 10.1016/j.chom.2018.07.002. Epub 2018 Jul 26.

PMID:
30057174
6.

Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota.

Tropini C, Moss EL, Merrill BD, Ng KM, Higginbottom SK, Casavant EP, Gonzalez CG, Fremin B, Bouley DM, Elias JE, Bhatt AS, Huang KC, Sonnenburg JL.

Cell. 2018 Jun 14;173(7):1742-1754.e17. doi: 10.1016/j.cell.2018.05.008.

PMID:
29906449
7.

Gut Microbiota-Produced Tryptamine Activates an Epithelial G-Protein-Coupled Receptor to Increase Colonic Secretion.

Bhattarai Y, Williams BB, Battaglioli EJ, Whitaker WR, Till L, Grover M, Linden DR, Akiba Y, Kandimalla KK, Zachos NC, Kaunitz JD, Sonnenburg JL, Fischbach MA, Farrugia G, Kashyap PC.

Cell Host Microbe. 2018 Jun 13;23(6):775-785.e5. doi: 10.1016/j.chom.2018.05.004.

PMID:
29902441
8.

Genetic Variation of the SusC/SusD Homologs from a Polysaccharide Utilization Locus Underlies Divergent Fructan Specificities and Functional Adaptation in Bacteroides thetaiotaomicron Strains.

Joglekar P, Sonnenburg ED, Higginbottom SK, Earle KA, Morland C, Shapiro-Ward S, Bolam DN, Sonnenburg JL.

mSphere. 2018 May 23;3(3). pii: e00185-18. doi: 10.1128/mSphereDirect.00185-18. eCollection 2018 May-Jun.

9.

An exclusive metabolic niche enables strain engraftment in the gut microbiota.

Shepherd ES, DeLoache WC, Pruss KM, Whitaker WR, Sonnenburg JL.

Nature. 2018 May;557(7705):434-438. doi: 10.1038/s41586-018-0092-4. Epub 2018 May 9.

10.

Microbiota-accessible carbohydrates suppress Clostridium difficile infection in a murine model.

Hryckowian AJ, Van Treuren W, Smits SA, Davis NM, Gardner JO, Bouley DM, Sonnenburg JL.

Nat Microbiol. 2018 Jun;3(6):662-669. doi: 10.1038/s41564-018-0150-6. Epub 2018 Apr 23.

11.

Dynamic Light Scattering Microrheology Reveals Multiscale Viscoelasticity of Polymer Gels and Precious Biological Materials.

Krajina BA, Tropini C, Zhu A, DiGiacomo P, Sonnenburg JL, Heilshorn SC, Spakowitz AJ.

ACS Cent Sci. 2017 Dec 27;3(12):1294-1303. doi: 10.1021/acscentsci.7b00449. Epub 2017 Dec 15.

12.

A gut bacterial pathway metabolizes aromatic amino acids into nine circulating metabolites.

Dodd D, Spitzer MH, Van Treuren W, Merrill BD, Hryckowian AJ, Higginbottom SK, Le A, Cowan TM, Nolan GP, Fischbach MA, Sonnenburg JL.

Nature. 2017 Nov 30;551(7682):648-652. doi: 10.1038/nature24661. Epub 2017 Nov 22.

13.

Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania.

Smits SA, Leach J, Sonnenburg ED, Gonzalez CG, Lichtman JS, Reid G, Knight R, Manjurano A, Changalucha J, Elias JE, Dominguez-Bello MG, Sonnenburg JL.

Science. 2017 Aug 25;357(6353):802-806. doi: 10.1126/science.aan4834.

14.

Tunable Expression Tools Enable Single-Cell Strain Distinction in the Gut Microbiome.

Whitaker WR, Shepherd ES, Sonnenburg JL.

Cell. 2017 Apr 20;169(3):538-546.e12. doi: 10.1016/j.cell.2017.03.041.

15.

The Gut Microbiome: Connecting Spatial Organization to Function.

Tropini C, Earle KA, Huang KC, Sonnenburg JL.

Cell Host Microbe. 2017 Apr 12;21(4):433-442. doi: 10.1016/j.chom.2017.03.010. Review.

16.

Commensal Microbes and Hair Follicle Morphogenesis Coordinately Drive Treg Migration into Neonatal Skin.

Scharschmidt TC, Vasquez KS, Pauli ML, Leitner EG, Chu K, Truong HA, Lowe MM, Sanchez Rodriguez R, Ali N, Laszik ZG, Sonnenburg JL, Millar SE, Rosenblum MD.

Cell Host Microbe. 2017 Apr 12;21(4):467-477.e5. doi: 10.1016/j.chom.2017.03.001. Epub 2017 Mar 23.

17.

The emerging metabolic view of Clostridium difficile pathogenesis.

Hryckowian AJ, Pruss KM, Sonnenburg JL.

Curr Opin Microbiol. 2017 Feb;35:42-47. doi: 10.1016/j.mib.2016.11.006. Epub 2016 Dec 19. Review.

18.

Modulation of a Circulating Uremic Solute via Rational Genetic Manipulation of the Gut Microbiota.

Devlin AS, Marcobal A, Dodd D, Nayfach S, Plummer N, Meyer T, Pollard KS, Sonnenburg JL, Fischbach MA.

Cell Host Microbe. 2016 Dec 14;20(6):709-715. doi: 10.1016/j.chom.2016.10.021. Epub 2016 Dec 1.

19.

Individualized Responses of Gut Microbiota to Dietary Intervention Modeled in Humanized Mice.

Smits SA, Marcobal A, Higginbottom S, Sonnenburg JL, Kashyap PC.

mSystems. 2016 Sep 6;1(5). pii: e00098-16. eCollection 2016 Sep-Oct.

20.

Diet-microbiota interactions as moderators of human metabolism.

Sonnenburg JL, Bäckhed F.

Nature. 2016 Jul 7;535(7610):56-64. doi: 10.1038/nature18846. Review.

21.

Correlated gene expression encoding serotonin (5-HT) receptor 4 and 5-HT transporter in proximal colonic segments of mice across different colonization states and sexes.

Reigstad CS, Linden DR, Szurszewski JH, Sonnenburg JL, Farrugia G, Kashyap PC.

Neurogastroenterol Motil. 2016 Sep;28(9):1443-8. doi: 10.1111/nmo.12840. Epub 2016 Apr 12.

22.

Host-Microbiota Interactions in the Pathogenesis of Antibiotic-Associated Diseases.

Lichtman JS, Ferreyra JA, Ng KM, Smits SA, Sonnenburg JL, Elias JE.

Cell Rep. 2016 Feb 9;14(5):1049-1061. doi: 10.1016/j.celrep.2016.01.009. Epub 2016 Jan 28.

23.

Diet-induced extinctions in the gut microbiota compound over generations.

Sonnenburg ED, Smits SA, Tikhonov M, Higginbottom SK, Wingreen NS, Sonnenburg JL.

Nature. 2016 Jan 14;529(7585):212-5. doi: 10.1038/nature16504.

24.

Nutrition: A personal forecast.

Sonnenburg ED, Sonnenburg JL.

Nature. 2015 Dec 24;528(7583):484-6. doi: 10.1038/528484a. No abstract available.

PMID:
26701049
25.

Your gut microbiome, deconstructed.

Dodd D, Tropini C, Sonnenburg JL.

Nat Biotechnol. 2015 Dec 9;33(12):1238-1240. doi: 10.1038/nbt.3431. No abstract available.

PMID:
26650010
26.

The effect of microbial colonization on the host proteome varies by gastrointestinal location.

Lichtman JS, Alsentzer E, Jaffe M, Sprockett D, Masutani E, Ikwa E, Fragiadakis GK, Clifford D, Huang BE, Sonnenburg JL, Huang KC, Elias JE.

ISME J. 2016 May;10(5):1170-81. doi: 10.1038/ismej.2015.187. Epub 2015 Nov 17.

27.

Quantitative Imaging of Gut Microbiota Spatial Organization.

Earle KA, Billings G, Sigal M, Lichtman JS, Hansson GC, Elias JE, Amieva MR, Huang KC, Sonnenburg JL.

Cell Host Microbe. 2015 Oct 14;18(4):478-88. doi: 10.1016/j.chom.2015.09.002. Epub 2015 Oct 1.

28.

A small-molecule antivirulence agent for treating Clostridium difficile infection.

Bender KO, Garland M, Ferreyra JA, Hryckowian AJ, Child MA, Puri AW, Solow-Cordero DE, Higginbottom SK, Segal E, Banaei N, Shen A, Sonnenburg JL, Bogyo M.

Sci Transl Med. 2015 Sep 23;7(306):306ra148. doi: 10.1126/scitranslmed.aac9103. Epub 2015 Sep 23.

29.

Metabolome progression during early gut microbial colonization of gnotobiotic mice.

Marcobal A, Yusufaly T, Higginbottom S, Snyder M, Sonnenburg JL, Mias GI.

Sci Rep. 2015 Jun 29;5:11589. doi: 10.1038/srep11589.

30.

Monitoring host responses to the gut microbiota.

Lichtman JS, Sonnenburg JL, Elias JE.

ISME J. 2015 Sep;9(9):1908-15. doi: 10.1038/ismej.2015.93. Epub 2015 Jun 9. Review.

31.

Microbiome engineering.

Sonnenburg JL.

Nature. 2015 Feb 26;518(7540):S10. doi: 10.1038/518S10a. No abstract available.

PMID:
25715274
32.

Gut microbes promote colonic serotonin production through an effect of short-chain fatty acids on enterochromaffin cells.

Reigstad CS, Salmonson CE, Rainey JF 3rd, Szurszewski JH, Linden DR, Sonnenburg JL, Farrugia G, Kashyap PC.

FASEB J. 2015 Apr;29(4):1395-403. doi: 10.1096/fj.14-259598. Epub 2014 Dec 30.

33.

Gut microbiota-produced succinate promotes C. difficile infection after antibiotic treatment or motility disturbance.

Ferreyra JA, Wu KJ, Hryckowian AJ, Bouley DM, Weimer BC, Sonnenburg JL.

Cell Host Microbe. 2014 Dec 10;16(6):770-7. doi: 10.1016/j.chom.2014.11.003.

34.

Editorial overview: insights into molecular mechanisms of microbiota.

Martens EC, Sonnenburg JL, Relman DA.

J Mol Biol. 2014 Nov 25;426(23):3827-9. doi: 10.1016/j.jmb.2014.08.021. Epub 2014 Sep 11. No abstract available.

PMID:
25218944
35.

Starving our microbial self: the deleterious consequences of a diet deficient in microbiota-accessible carbohydrates.

Sonnenburg ED, Sonnenburg JL.

Cell Metab. 2014 Nov 4;20(5):779-786. doi: 10.1016/j.cmet.2014.07.003. Epub 2014 Aug 21.

36.

Reprograming of gut microbiome energy metabolism by the FUT2 Crohn's disease risk polymorphism.

Tong M, McHardy I, Ruegger P, Goudarzi M, Kashyap PC, Haritunians T, Li X, Graeber TG, Schwager E, Huttenhower C, Fornace AJ Jr, Sonnenburg JL, McGovern DP, Borneman J, Braun J.

ISME J. 2014 Nov;8(11):2193-206. doi: 10.1038/ismej.2014.64. Epub 2014 Apr 29.

37.

The Enteric Two-Step: nutritional strategies of bacterial pathogens within the gut.

Ferreyra JA, Ng KM, Sonnenburg JL.

Cell Microbiol. 2014 Jul;16(7):993-1003. doi: 10.1111/cmi.12300. Epub 2014 May 5. Review.

38.

Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships.

McHardy IH, Goudarzi M, Tong M, Ruegger PM, Schwager E, Weger JR, Graeber TG, Sonnenburg JL, Horvath S, Huttenhower C, McGovern DP, Fornace AJ Jr, Borneman J, Braun J.

Microbiome. 2013 Jun 5;1(1):17. doi: 10.1186/2049-2618-1-17.

39.

Gut microbes take their vitamins.

Sonnenburg ED, Sonnenburg JL.

Cell Host Microbe. 2014 Jan 15;15(1):5-6. doi: 10.1016/j.chom.2013.12.011.

40.

Rapid evolution of binding specificities and expression patterns of inhibitory CD33-related Siglecs in primates.

Padler-Karavani V, Hurtado-Ziola N, Chang YC, Sonnenburg JL, Ronaghy A, Yu H, Verhagen A, Nizet V, Chen X, Varki N, Varki A, Angata T.

FASEB J. 2014 Mar;28(3):1280-93. doi: 10.1096/fj.13-241497. Epub 2013 Dec 5.

41.

Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota.

Kashyap PC, Marcobal A, Ursell LK, Smits SA, Sonnenburg ED, Costello EK, Higginbottom SK, Domino SE, Holmes SP, Relman DA, Knight R, Gordon JI, Sonnenburg JL.

Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):17059-64. doi: 10.1073/pnas.1306070110. Epub 2013 Sep 23.

42.

Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens.

Ng KM, Ferreyra JA, Higginbottom SK, Lynch JB, Kashyap PC, Gopinath S, Naidu N, Choudhury B, Weimer BC, Monack DM, Sonnenburg JL.

Nature. 2013 Oct 3;502(7469):96-9. doi: 10.1038/nature12503. Epub 2013 Sep 1.

43.

Host-centric proteomics of stool: a novel strategy focused on intestinal responses to the gut microbiota.

Lichtman JS, Marcobal A, Sonnenburg JL, Elias JE.

Mol Cell Proteomics. 2013 Nov;12(11):3310-8. doi: 10.1074/mcp.M113.029967. Epub 2013 Aug 27.

44.

Production of α-galactosylceramide by a prominent member of the human gut microbiota.

Wieland Brown LC, Penaranda C, Kashyap PC, Williams BB, Clardy J, Kronenberg M, Sonnenburg JL, Comstock LE, Bluestone JA, Fischbach MA.

PLoS Biol. 2013 Jul;11(7):e1001610. doi: 10.1371/journal.pbio.1001610. Epub 2013 Jul 16.

45.

A metabolomic view of how the human gut microbiota impacts the host metabolome using humanized and gnotobiotic mice.

Marcobal A, Kashyap PC, Nelson TA, Aronov PA, Donia MS, Spormann A, Fischbach MA, Sonnenburg JL.

ISME J. 2013 Oct;7(10):1933-43. doi: 10.1038/ismej.2013.89. Epub 2013 Jun 6.

46.

A refined palate: bacterial consumption of host glycans in the gut.

Marcobal A, Southwick AM, Earle KA, Sonnenburg JL.

Glycobiology. 2013 Sep;23(9):1038-46. doi: 10.1093/glycob/cwt040. Epub 2013 May 28. Review.

47.

Complex interactions among diet, gastrointestinal transit, and gut microbiota in humanized mice.

Kashyap PC, Marcobal A, Ursell LK, Larauche M, Duboc H, Earle KA, Sonnenburg ED, Ferreyra JA, Higginbottom SK, Million M, Tache Y, Pasricha PJ, Knight R, Farrugia G, Sonnenburg JL.

Gastroenterology. 2013 May;144(5):967-77. doi: 10.1053/j.gastro.2013.01.047. Epub 2013 Feb 1.

48.

Molecular analysis of model gut microbiotas by imaging mass spectrometry and nanodesorption electrospray ionization reveals dietary metabolite transformations.

Rath CM, Alexandrov T, Higginbottom SK, Song J, Milla ME, Fischbach MA, Sonnenburg JL, Dorrestein PC.

Anal Chem. 2012 Nov 6;84(21):9259-67. doi: 10.1021/ac302039u. Epub 2012 Oct 10.

49.

Prioritization of a plant polysaccharide over a mucus carbohydrate is enforced by a Bacteroides hybrid two-component system.

Lynch JB, Sonnenburg JL.

Mol Microbiol. 2012 Aug;85(3):478-91. doi: 10.1111/j.1365-2958.2012.08123.x. Epub 2012 Jul 5.

50.

Human milk oligosaccharide consumption by intestinal microbiota.

Marcobal A, Sonnenburg JL.

Clin Microbiol Infect. 2012 Jul;18 Suppl 4:12-5. doi: 10.1111/j.1469-0691.2012.03863.x. Review.

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