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Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China.

Yang T, Tedersoo L, Soltis PS, Soltis DE, Gilbert JA, Sun M, Shi Y, Wang H, Li Y, Zhang J, Chen Z, Lin H, Zhao Y, Fu C, Chu H.

ISME J. 2018 Oct 23. doi: 10.1038/s41396-018-0303-x. [Epub ahead of print]


Terrestrial species adapted to sea dispersal: Differences in propagule dispersal of two Caribbean mangroves.

Hodel RGJ, Knowles LL, McDaniel SF, Payton AC, Dunaway JF, Soltis PS, Soltis DE.

Mol Ecol. 2018 Oct 11. doi: 10.1111/mec.14894. [Epub ahead of print]


Evolutionary insights from comparative transcriptome and transcriptome-wide coalescence analyses in Tetrastigma hemsleyanum.

Wang Y, Jiang W, Ye W, Fu C, Gitzendanner MA, Soltis PS, Soltis DE, Qiu Y.

BMC Plant Biol. 2018 Sep 24;18(1):208. doi: 10.1186/s12870-018-1429-8.


Climatic niche comparison among ploidal levels in the classic autopolyploid system, Galax urceolata.

Gaynor ML, Marchant DB, Soltis DE, Soltis PS.

Am J Bot. 2018 Oct;105(10):1631-1642. doi: 10.1002/ajb2.1161. Epub 2018 Sep 21.


A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids.

Boatwright JL, McIntyre LM, Morse AM, Chen S, Yoo MJ, Koh J, Soltis PS, Soltis DE, Barbazuk WB.

Genetics. 2018 Nov;210(3):883-894. doi: 10.1534/genetics.118.301564. Epub 2018 Sep 13.


Application of CRISPR/Cas9 to Tragopogon (Asteraceae), an evolutionary model for the study of polyploidy.

Shan S, Mavrodiev EV, Li R, Zhang Z, Hauser BA, Soltis PS, Soltis DE, Yang B.

Mol Ecol Resour. 2018 Nov;18(6):1427-1443. doi: 10.1111/1755-0998.12935. Epub 2018 Sep 11.


Geographic Range Dynamics Drove Ancient Hybridization in a Lineage of Angiosperms.

Folk RA, Visger CJ, Soltis PS, Soltis DE, Guralnick RP.

Am Nat. 2018 Aug;192(2):171-187. doi: 10.1086/698120. Epub 2018 Jun 20.


Evolution of floral traits and impact of reproductive mode on diversification in the phlox family (Polemoniaceae).

Landis JB, Bell CD, Hernandez M, Zenil-Ferguson R, McCarthy EW, Soltis DE, Soltis PS.

Mol Phylogenet Evol. 2018 Oct;127:878-890. doi: 10.1016/j.ympev.2018.06.035. Epub 2018 Jun 27.


Phylogeny and staminal evolution of Salvia (Lamiaceae, Nepetoideae) in East Asia.

Hu GX, Takano A, Drew BT, Liu ED, Soltis DE, Soltis PS, Peng H, Xiang CL.

Ann Bot. 2018 Sep 24;122(4):649-668. doi: 10.1093/aob/mcy104.


Digitization of herbaria enables novel research.

Soltis PS.

Am J Bot. 2017 Sep;104(9):1281-1284. doi: 10.3732/ajb.1700281. No abstract available.


Karyotypic variation and pollen stainability in resynthesized allopolyploids Tragopogon miscellus and T. mirus.

Spoelhof JP, Chester M, Rodriguez R, Geraci B, Heo K, Mavrodiev E, Soltis PS, Soltis DE.

Am J Bot. 2017 Oct;104(10):1484-1492. doi: 10.3732/ajb.1700180.


Herbarium data: Global biodiversity and societal botanical needs for novel research.

James SA, Soltis PS, Belbin L, Chapman AD, Nelson G, Paul DL, Collins M.

Appl Plant Sci. 2018 Feb 28;6(2):e1024. doi: 10.1002/aps3.1024. eCollection 2018 Feb. Review.


Digitization protocol for scoring reproductive phenology from herbarium specimens of seed plants.

Yost JM, Sweeney PW, Gilbert E, Nelson G, Guralnick R, Gallinat AS, Ellwood ER, Rossington N, Willis CG, Blum SD, Walls RL, Haston EM, Denslow MW, Zohner CM, Morris AB, Stucky BJ, Carter JR, Baxter DG, Bolmgren K, Denny EG, Dean E, Pearson KD, Davis CC, Mishler BD, Soltis PS, Mazer SJ.

Appl Plant Sci. 2018 Feb 28;6(2):e1022. doi: 10.1002/aps3.1022. eCollection 2018 Feb.


Impact of whole-genome duplication events on diversification rates in angiosperms.

Landis JB, Soltis DE, Li Z, Marx HE, Barker MS, Tank DC, Soltis PS.

Am J Bot. 2018 Mar;105(3):348-363. doi: 10.1002/ajb2.1060. Epub 2018 May 2.


Using and navigating the plant tree of life.

Soltis DE, Moore MJ, Sessa EB, Smith SA, Soltis PS.

Am J Bot. 2018 Mar;105(3):287-290. doi: 10.1002/ajb2.1071. Epub 2018 Apr 27. No abstract available.


Linking genome signatures of selection and adaptation in non-model plants: exploring potential and limitations in the angiosperm Amborella.

Hodel RG, Chandler LM, Fahrenkrog AM, Kirst M, Gitzendanner MA, Soltis DE, Soltis PS.

Curr Opin Plant Biol. 2018 Apr;42:81-89. doi: 10.1016/j.pbi.2018.04.003. Epub 2018 Apr 27. Review.


Earth BioGenome Project: Sequencing life for the future of life.

Lewin HA, Robinson GE, Kress WJ, Baker WJ, Coddington J, Crandall KA, Durbin R, Edwards SV, Forest F, Gilbert MTP, Goldstein MM, Grigoriev IV, Hackett KJ, Haussler D, Jarvis ED, Johnson WE, Patrinos A, Richards S, Castilla-Rubio JC, van Sluys MA, Soltis PS, Xu X, Yang H, Zhang G.

Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4325-4333. doi: 10.1073/pnas.1720115115.


New prospects in the detection and comparative analysis of hybridization in the tree of life.

Folk RA, Soltis PS, Soltis DE, Guralnick R.

Am J Bot. 2018 Mar;105(3):364-375. doi: 10.1002/ajb2.1018. Epub 2018 Feb 14.


Challenges of comprehensive taxon sampling in comparative biology: Wrestling with rosids.

Folk RA, Sun M, Soltis PS, Smith SA, Soltis DE, Guralnick RP.

Am J Bot. 2018 Mar;105(3):433-445. doi: 10.1002/ajb2.1059. Epub 2018 Apr 17.


Character evolution and missing (morphological) data across Asteridae.

Stull GW, Schori M, Soltis DE, Soltis PS.

Am J Bot. 2018 Mar;105(3):470-479. doi: 10.1002/ajb2.1050. Epub 2018 Apr 14.


10KP: A phylodiverse genome sequencing plan.

Cheng S, Melkonian M, Smith SA, Brockington S, Archibald JM, Delaux PM, Li FW, Melkonian B, Mavrodiev EV, Sun W, Fu Y, Yang H, Soltis DE, Graham SW, Soltis PS, Liu X, Xu X, Wong GK.

Gigascience. 2018 Mar 1;7(3):1-9. doi: 10.1093/gigascience/giy013.


Plastid phylogenomic analysis of green plants: A billion years of evolutionary history.

Gitzendanner MA, Soltis PS, Wong GK, Ruhfel BR, Soltis DE.

Am J Bot. 2018 Mar;105(3):291-301. doi: 10.1002/ajb2.1048. Epub 2018 Mar 30.


Worldwide Engagement for Digitizing Biocollections (WeDigBio): The Biocollections Community's Citizen-Science Space on the Calendar.

Ellwood ER, Kimberly P, Guralnick R, Flemons P, Love K, Ellis S, Allen JM, Best JH, Carter R, Chagnoux S, Costello R, Denslow MW, Dunckel BA, Ferriter MM, Gilbert EE, Goforth C, Groom Q, Krimmel ER, LaFrance R, Martinec JL, Miller AN, Minnaert-Grote J, Nash T, Oboyski P, Paul DL, Pearson KD, Pentcheff ND, Roberts MA, Seltzer CE, Soltis PS, Stephens R, Sweeney PW, von Konrat M, Wall A, Wetzer R, Zimmerman C, Mast AR.

Bioscience. 2018 Feb 1;68(2):112-124. doi: 10.1093/biosci/bix143. Epub 2018 Jan 17.


Evolutionary history of the angiosperm flora of China.

Lu LM, Mao LF, Yang T, Ye JF, Liu B, Li HL, Sun M, Miller JT, Mathews S, Hu HH, Niu YT, Peng DX, Chen YH, Smith SA, Chen M, Xiang KL, Le CT, Dang VC, Lu AM, Soltis PS, Soltis DE, Li JH, Chen ZD.

Nature. 2018 Feb 8;554(7691):234-238. doi: 10.1038/nature25485. Epub 2018 Jan 31.


Cytogeography of Callisia section Cuthbertia (Commelinaceae).

Molgo IE, Soltis DE, Soltis PS.

Comp Cytogenet. 2017 Sep 1;11(4):553-577. doi: 10.3897/CompCytogen.v11i4.11984. eCollection 2017.


Insights into the historical assembly of East Asian subtropical evergreen broadleaved forests revealed by the temporal history of the tea family.

Yu XQ, Gao LM, Soltis DE, Soltis PS, Yang JB, Fang L, Yang SX, Li DZ.

New Phytol. 2017 Aug;215(3):1235-1248. doi: 10.1111/nph.14683.


Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae).

Landis JB, Soltis DE, Soltis PS.

BMC Genomics. 2017 Jun 23;18(1):475. doi: 10.1186/s12864-017-3868-2.


Old Plants, New Tricks: Phenological Research Using Herbarium Specimens.

Willis CG, Ellwood ER, Primack RB, Davis CC, Pearson KD, Gallinat AS, Yost JM, Nelson G, Mazer SJ, Rossington NL, Sparks TH, Soltis PS.

Trends Ecol Evol. 2017 Jul;32(7):531-546. doi: 10.1016/j.tree.2017.03.015. Epub 2017 Apr 29. Review.


Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae).

García N, Folk RA, Meerow AW, Chamala S, Gitzendanner MA, Oliveira RS, Soltis DE, Soltis PS.

Mol Phylogenet Evol. 2017 Jun;111:231-247. doi: 10.1016/j.ympev.2017.04.003. Epub 2017 Apr 6.


Detecting alternatively spliced transcript isoforms from single-molecule long-read sequences without a reference genome.

Liu X, Mei W, Soltis PS, Soltis DE, Barbazuk WB.

Mol Ecol Resour. 2017 Nov;17(6):1243-1256. doi: 10.1111/1755-0998.12670. Epub 2017 Jun 5.


Is homoploid hybrid speciation that rare? An empiricist's view.

Nieto Feliner G, Álvarez I, Fuertes-Aguilar J, Heuertz M, Marques I, Moharrek F, Piñeiro R, Riina R, Rosselló JA, Soltis PS, Villa-Machío I.

Heredity (Edinb). 2017 Jun;118(6):513-516. doi: 10.1038/hdy.2017.7. Epub 2017 Mar 15. No abstract available.


Evolutionary and domestication history of Cucurbita (pumpkin and squash) species inferred from 44 nuclear loci.

Kates HR, Soltis PS, Soltis DE.

Mol Phylogenet Evol. 2017 Jun;111:98-109. doi: 10.1016/j.ympev.2017.03.002. Epub 2017 Mar 10.


Evolutionary Conservation of ABA Signaling for Stomatal Closure.

Cai S, Chen G, Wang Y, Huang Y, Marchant DB, Wang Y, Yang Q, Dai F, Hills A, Franks PJ, Nevo E, Soltis DE, Soltis PS, Sessa E, Wolf PG, Xue D, Zhang G, Pogson BJ, Blatt MR, Chen ZH.

Plant Physiol. 2017 Jun;174(2):732-747. doi: 10.1104/pp.16.01848. Epub 2017 Feb 23.


Whole-genome duplication and molecular evolution in Cornus L. (Cornaceae) - Insights from transcriptome sequences.

Yu Y, Xiang Q, Manos PS, Soltis DE, Soltis PS, Song BH, Cheng S, Liu X, Wong G.

PLoS One. 2017 Feb 22;12(2):e0171361. doi: 10.1371/journal.pone.0171361. eCollection 2017.


Mobilizing and integrating big data in studies of spatial and phylogenetic patterns of biodiversity.

Soltis DE, Soltis PS.

Plant Divers. 2016 Dec 24;38(6):264-270. doi: 10.1016/j.pld.2016.12.001. eCollection 2016 Dec.


Evolution of floral diversity: genomics, genes and gamma.

Chanderbali AS, Berger BA, Howarth DG, Soltis DE, Soltis PS.

Philos Trans R Soc Lond B Biol Sci. 2017 Feb 5;372(1713). pii: 20150509. Review.


Idiosyncratic responses of evergreen broad-leaved forest constituents in China to the late Quaternary climate changes.

Fan D, Hu W, Li B, Morris AB, Zheng M, Soltis DE, Soltis PS, Zhang Z.

Sci Rep. 2016 Aug 18;6:31044. doi: 10.1038/srep31044.


Niche divergence between diploid and autotetraploid Tolmiea.

Visger CJ, Germain-Aubrey CC, Patel M, Sessa EB, Soltis PS, Soltis DE.

Am J Bot. 2016 Aug;103(8):1396-406. doi: 10.3732/ajb.1600130. Epub 2016 Aug 9.


Patterns of abiotic niche shifts in allopolyploids relative to their progenitors.

Blaine Marchant D, Soltis DE, Soltis PS.

New Phytol. 2016 Nov;212(3):708-718. doi: 10.1111/nph.14069. Epub 2016 Jul 11.


The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century.

Hodel RG, Segovia-Salcedo MC, Landis JB, Crowl AA, Sun M, Liu X, Gitzendanner MA, Douglas NA, Germain-Aubrey CC, Chen S, Soltis DE, Soltis PS.

Appl Plant Sci. 2016 Jun 16;4(6). pii: apps.1600025. doi: 10.3732/apps.1600025. eCollection 2016 Jun.


A new resource for the development of SSR markers: Millions of loci from a thousand plant transcriptomes.

Hodel RG, Gitzendanner MA, Germain-Aubrey CC, Liu X, Crowl AA, Sun M, Landis JB, Segovia-Salcedo MC, Douglas NA, Chen S, Soltis DE, Soltis PS.

Appl Plant Sci. 2016 Jun 16;4(6). pii: apps.1600024. doi: 10.3732/apps.1600024. eCollection 2016 Jun.


Polyploidy: Pitfalls and paths to a paradigm.

Soltis DE, Visger CJ, Marchant DB, Soltis PS.

Am J Bot. 2016 Jul;103(7):1146-66. doi: 10.3732/ajb.1500501. Epub 2016 May 27.


Ancient WGD events as drivers of key innovations in angiosperms.

Soltis PS, Soltis DE.

Curr Opin Plant Biol. 2016 Apr;30:159-65. doi: 10.1016/j.pbi.2016.03.015. Epub 2016 Apr 8. Review.


Comparative phylogeography of black mangroves (Avicennia germinans) and red mangroves (Rhizophora mangle) in Florida: Testing the maritime discontinuity in coastal plants.

Hodel RG, Cortez MB, Soltis PS, Soltis DE.

Am J Bot. 2016 Apr;103(4):730-9. doi: 10.3732/ajb.1500260. Epub 2016 Apr 7.


Evolving Ideas on the Origin and Evolution of Flowers: New Perspectives in the Genomic Era.

Chanderbali AS, Berger BA, Howarth DG, Soltis PS, Soltis DE.

Genetics. 2016 Apr;202(4):1255-65. doi: 10.1534/genetics.115.182964. Review.


Polyploidy and the proteome.

Soltis DE, Misra BB, Shan S, Chen S, Soltis PS.

Biochim Biophys Acta. 2016 Aug;1864(8):896-907. doi: 10.1016/j.bbapap.2016.03.010. Epub 2016 Mar 16. Review.


Are microsatellite fragment lengths useful for population-level studies? The case of Polygala lewtonii (Polygalaceae).

Germain-Aubrey CC, Nelson C, Soltis DE, Soltis PS, Gitzendanner MA.

Appl Plant Sci. 2016 Feb 15;4(2). pii: apps.1500115. doi: 10.3732/apps.1500115. eCollection 2016 Feb.


The Phenotypic and Genetic Underpinnings of Flower Size in Polemoniaceae.

Landis JB, O'Toole RD, Ventura KL, Gitzendanner MA, Oppenheimer DG, Soltis DE, Soltis PS.

Front Plant Sci. 2016 Jan 5;6:1144. doi: 10.3389/fpls.2015.01144. eCollection 2015.


Phylogenomic and structural analyses of 18 complete plastomes across nearly all families of early-diverging eudicots, including an angiosperm-wide analysis of IR gene content evolution.

Sun Y, Moore MJ, Zhang S, Soltis PS, Soltis DE, Zhao T, Meng A, Li X, Li J, Wang H.

Mol Phylogenet Evol. 2016 Mar;96:93-101. doi: 10.1016/j.ympev.2015.12.006. Epub 2015 Dec 24.


Interpopulation hybridization generates meiotically stable rDNA epigenetic variants in allotetraploid Tragopogon mirus.

Matyášek R, Dobešová E, Húska D, Ježková I, Soltis PS, Soltis DE, Kovařík A.

Plant J. 2016 Feb;85(3):362-77. doi: 10.1111/tpj.13110.

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