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Items: 40

1.

Mutation-derived Neoantigen-specific T-cell Responses in Multiple Myeloma.

Perumal D, Imai N, Laganà A, Finnigan J, Melnekoff D, Leshchenko VV, Solovyov A, Madduri D, Chari A, Cho HJ, Dudley JT, Brody JD, Jagannath S, Greenbaum B, Gnjatic S, Bhardwaj N, Parekh S.

Clin Cancer Res. 2020 Jan 15;26(2):450-464. doi: 10.1158/1078-0432.CCR-19-2309. Epub 2019 Dec 19.

PMID:
31857430
2.

Bulky Calixarene Ligands Stabilize Supported Iridium Pair-Site Catalysts.

Schöttle C, Guan E, Okrut A, Grosso-Giordano NA, Palermo A, Solovyov A, Gates BC, Katz A.

J Am Chem Soc. 2019 Mar 6;141(9):4010-4015. doi: 10.1021/jacs.8b13013. Epub 2019 Feb 22.

PMID:
30736668
3.

A tumor-specific endogenous repetitive element is induced by herpesviruses.

Nogalski MT, Solovyov A, Kulkarni AS, Desai N, Oberstein A, Levine AJ, Ting DT, Shenk T, Greenbaum BD.

Nat Commun. 2019 Jan 9;10(1):90. doi: 10.1038/s41467-018-07944-x.

4.

FBXW7 regulates a mitochondrial transcription program by modulating MITF.

Abbate F, Badal B, Mendelson K, Aydin IT, Serasinghe MN, Iqbal R, Mohammed JN, Solovyov A, Greenbaum BD, Chipuk JE, Celebi JT.

Pigment Cell Melanoma Res. 2018 Sep;31(5):636-640. doi: 10.1111/pcmr.12704. Epub 2018 Apr 29.

5.

Global Cancer Transcriptome Quantifies Repeat Element Polarization between Immunotherapy Responsive and T Cell Suppressive Classes.

Solovyov A, Vabret N, Arora KS, Snyder A, Funt SA, Bajorin DF, Rosenberg JE, Bhardwaj N, Ting DT, Greenbaum BD.

Cell Rep. 2018 Apr 10;23(2):512-521. doi: 10.1016/j.celrep.2018.03.042.

6.

Outer-Sphere Control of Catalysis on Surfaces: A Comparative Study of Ti(IV) Single-Sites Grafted on Amorphous versus Crystalline Silicates for Alkene Epoxidation.

Grosso-Giordano NA, Schroeder C, Okrut A, Solovyov A, Schöttle C, Chassé W, Marinković N, Koller H, Zones SI, Katz A.

J Am Chem Soc. 2018 Apr 18;140(15):4956-4960. doi: 10.1021/jacs.7b11467. Epub 2018 Apr 3.

PMID:
29565124
7.

A comparison of bioclimatic potential in two global regions during the late twentieth century and early twenty-first century.

Lebedeva MG, Lupo AR, Henson CB, Solovyov AB, Chendev YG, Market PS.

Int J Biometeorol. 2018 Apr;62(4):609-620. doi: 10.1007/s00484-017-1470-6. Epub 2017 Nov 22.

PMID:
29167991
8.

A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy.

Łuksza M, Riaz N, Makarov V, Balachandran VP, Hellmann MD, Solovyov A, Rizvi NA, Merghoub T, Levine AJ, Chan TA, Wolchok JD, Greenbaum BD.

Nature. 2017 Nov 23;551(7681):517-520. doi: 10.1038/nature24473. Epub 2017 Nov 8.

9.

Dialing in single-site reactivity of a supported calixarene-protected tetrairidium cluster catalyst.

Palermo A, Solovyov A, Ertler D, Okrut A, Gates BC, Katz A.

Chem Sci. 2017 Jul 1;8(7):4951-4960. doi: 10.1039/c7sc00686a. Epub 2017 May 4.

10.

Nanoporous gold assemblies of calixarene-phosphine-capped colloids.

Schöttle C, Clark EL, Harker A, Solovyov A, Bell AT, Katz A.

Chem Commun (Camb). 2017 Oct 3;53(79):10870-10873. doi: 10.1039/c7cc05116f.

PMID:
28875996
11.

Role of N-Heterocyclic Carbenes as Ligands in Iridium Carbonyl Clusters.

Zhang S, Foyle SD, Okrut A, Solovyov A, Katz A, Gates BC, Dixon DA.

J Phys Chem A. 2017 Jul 6;121(26):5029-5044. doi: 10.1021/acs.jpca.7b04161. Epub 2017 Jun 23.

PMID:
28598617
12.

Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses.

Lavin Y, Kobayashi S, Leader A, Amir ED, Elefant N, Bigenwald C, Remark R, Sweeney R, Becker CD, Levine JH, Meinhof K, Chow A, Kim-Shulze S, Wolf A, Medaglia C, Li H, Rytlewski JA, Emerson RO, Solovyov A, Greenbaum BD, Sanders C, Vignali M, Beasley MB, Flores R, Gnjatic S, Pe'er D, Rahman A, Amit I, Merad M.

Cell. 2017 May 4;169(4):750-765.e17. doi: 10.1016/j.cell.2017.04.014.

13.

Transcriptional dissection of melanoma identifies a high-risk subtype underlying TP53 family genes and epigenome deregulation.

Badal B, Solovyov A, Di Cecilia S, Chan JM, Chang LW, Iqbal R, Aydin IT, Rajan GS, Chen C, Abbate F, Arora KS, Tanne A, Gruber SB, Johnson TM, Fullen DR, Raskin L, Phelps R, Bhardwaj N, Bernstein E, Ting DT, Brunner G, Schadt EE, Greenbaum BD, Celebi JT.

JCI Insight. 2017 May 4;2(9). pii: 92102. doi: 10.1172/jci.insight.92102. eCollection 2017 May 4.

14.

Dengue virus NS2B protein targets cGAS for degradation and prevents mitochondrial DNA sensing during infection.

Aguirre S, Luthra P, Sanchez-Aparicio MT, Maestre AM, Patel J, Lamothe F, Fredericks AC, Tripathi S, Zhu T, Pintado-Silva J, Webb LG, Bernal-Rubio D, Solovyov A, Greenbaum B, Simon V, Basler CF, Mulder LC, García-Sastre A, Fernandez-Sesma A.

Nat Microbiol. 2017 Mar 27;2:17037. doi: 10.1038/nmicrobiol.2017.37.

PMID:
28346446
15.

Stage-Specific Human Induced Pluripotent Stem Cells Map the Progression of Myeloid Transformation to Transplantable Leukemia.

Kotini AG, Chang CJ, Chow A, Yuan H, Ho TC, Wang T, Vora S, Solovyov A, Husser C, Olszewska M, Teruya-Feldstein J, Perumal D, Klimek VM, Spyridonidis A, Rampal RK, Silverman L, Reddy EP, Papaemmanuil E, Parekh S, Greenbaum BD, Leslie CS, Kharas MG, Papapetrou EP.

Cell Stem Cell. 2017 Mar 2;20(3):315-328.e7. doi: 10.1016/j.stem.2017.01.009. Epub 2017 Feb 16.

16.

Diverse repetitive element RNA expression defines epigenetic and immunologic features of colon cancer.

Desai N, Sajed D, Arora KS, Solovyov A, Rajurkar M, Bledsoe JR, Sil S, Amri R, Tai E, MacKenzie OC, Mino-Kenudson M, Aryee MJ, Ferrone CR, Berger DL, Rivera MN, Greenbaum BD, Deshpande V, Ting DT.

JCI Insight. 2017 Feb 9;2(3):e91078. doi: 10.1172/jci.insight.91078.

17.

Host-Protozoan Interactions Protect from Mucosal Infections through Activation of the Inflammasome.

Chudnovskiy A, Mortha A, Kana V, Kennard A, Ramirez JD, Rahman A, Remark R, Mogno I, Ng R, Gnjatic S, Amir ED, Solovyov A, Greenbaum B, Clemente J, Faith J, Belkaid Y, Grigg ME, Merad M.

Cell. 2016 Oct 6;167(2):444-456.e14. doi: 10.1016/j.cell.2016.08.076.

18.

[NEUROBLASTOMA IN PEDIATRIC PATIENTS].

Solovyov AE, Morgun VV, Paholchuk AP.

Klin Khir. 2015 Jun;(6):59-61. Russian.

PMID:
26521471
19.

Chelyabinsk airburst, damage assessment, meteorite recovery, and characterization.

Popova OP, Jenniskens P, Emel'yanenko V, Kartashova A, Biryukov E, Khaibrakhmanov S, Shuvalov V, Rybnov Y, Dudorov A, Grokhovsky VI, Badyukov DD, Yin QZ, Gural PS, Albers J, Granvik M, Evers LG, Kuiper J, Kharlamov V, Solovyov A, Rusakov YS, Korotkiy S, Serdyuk I, Korochantsev AV, Larionov MY, Glazachev D, Mayer AE, Gisler G, Gladkovsky SV, Wimpenny J, Sanborn ME, Yamakawa A, Verosub KL, Rowland DJ, Roeske S, Botto NW, Friedrich JM, Zolensky ME, Le L, Ross D, Ziegler K, Nakamura T, Ahn I, Lee JI, Zhou Q, Li XH, Li QL, Liu Y, Tang GQ, Hiroi T, Sears D, Weinstein IA, Vokhmintsev AS, Ishchenko AV, Schmitt-Kopplin P, Hertkorn N, Nagao K, Haba MK, Komatsu M, Mikouchi T; Chelyabinsk Airburst Consortium.

Science. 2013 Nov 29;342(6162):1069-73. doi: 10.1126/science.1242642. Epub 2013 Nov 7.

20.

Centroid based clustering of high throughput sequencing reads based on n-mer counts.

Solovyov A, Lipkin WI.

BMC Bioinformatics. 2013 Sep 8;14:268. doi: 10.1186/1471-2105-14-268.

21.

A strategy to estimate unknown viral diversity in mammals.

Anthony SJ, Epstein JH, Murray KA, Navarrete-Macias I, Zambrana-Torrelio CM, Solovyov A, Ojeda-Flores R, Arrigo NC, Islam A, Ali Khan S, Hosseini P, Bogich TL, Olival KJ, Sanchez-Leon MD, Karesh WB, Goldstein T, Luby SP, Morse SS, Mazet JA, Daszak P, Lipkin WI.

mBio. 2013 Sep 3;4(5):e00598-13. doi: 10.1128/mBio.00598-13.

22.

Accessible gold clusters using calix[4]arene N-heterocyclic carbene and phosphine ligands.

Nigra MM, Yeh AJ, Okrut A, DiPasquale AG, Yeh SW, Solovyov A, Katz A.

Dalton Trans. 2013 Sep 21;42(35):12762-71. doi: 10.1039/c3dt50804h.

PMID:
23917776
23.

Stabilization of coordinatively unsaturated Ir4 clusters with bulky ligands: a comparative study of chemical and mechanical effects.

Okrut A, Gazit O, de Silva N, Nichiporuk R, Solovyov A, Katz A.

Dalton Trans. 2012 Feb 21;41(7):2091-9. doi: 10.1039/c1dt11734c. Epub 2011 Dec 21.

PMID:
22186796
24.

Molecular characterization of severe and mild cases of influenza A (H1N1) 2009 strain from Argentina.

Baumeister E, Palacios G, Cisterna D, Solovyov A, Hui J, Savji N, Bussetti AV, Campos A, Pontoriero A, Jabado OJ, Street C, Hirschberg DL, Rabadan R, Alonio V, Molina V, Hutchison S, Egholm M, Lipkin WI.

Medicina (B Aires). 2010;70(6):518-23.

25.

A bioinspired approach for controlling accessibility in calix[4]arene-bound metal cluster catalysts.

de Silva N, Ha JM, Solovyov A, Nigra MM, Ogino I, Yeh SW, Durkin KA, Katz A.

Nat Chem. 2010 Dec;2(12):1062-8. doi: 10.1038/nchem.860. Epub 2010 Oct 3.

PMID:
21107371
26.

Heart and skeletal muscle inflammation of farmed salmon is associated with infection with a novel reovirus.

Palacios G, Lovoll M, Tengs T, Hornig M, Hutchison S, Hui J, Kongtorp RT, Savji N, Bussetti AV, Solovyov A, Kristoffersen AB, Celone C, Street C, Trifonov V, Hirschberg DL, Rabadan R, Egholm M, Rimstad E, Lipkin WI.

PLoS One. 2010 Jul 9;5(7):e11487. doi: 10.1371/journal.pone.0011487.

27.

Patterned metal polyhedra using calixarenes as organizational scaffolds: Ir4-based cluster assemblies.

de Silva N, Solovyov A, Katz A.

Dalton Trans. 2010 Mar 7;39(9):2194-7. doi: 10.1039/b922300b. Epub 2010 Jan 14. Erratum in: Dalton Trans. 2010 Dec 28;39(48):11689.

PMID:
20162190
28.

Host Dependent Evolutionary Patterns and the Origin of 2009 H1N1 Pandemic Influenza.

Solovyov A, Greenbaum B, Palacios G, Lipkin WI, Rabadan R.

Version 3. PLoS Curr. 2010 Jan 29 [revised 2010 Jan 1];2:RRN1147.

29.

Synthesis and characterization of accessible metal surfaces in calixarene-bound gold nanoparticles.

Ha JM, Solovyov A, Katz A.

Langmuir. 2009 Sep 15;25(18):10548-53. doi: 10.1021/la9013174.

PMID:
19645476
30.

Melting of DNA double strand after binding to geroprotective tetrapeptide.

Khavinson VKh, Solovyov AY, Shataeva LK.

Bull Exp Biol Med. 2008 Nov;146(5):624-6.

PMID:
19526107
31.

Cluster analysis of the origins of the new influenza A(H1N1) virus.

Solovyov A, Palacios G, Briese T, Lipkin WI, Rabadan R.

Euro Surveill. 2009 May 28;14(21). pii: 19224.

32.

Postsynthetic modification of gold nanoparticles with calix[4]arene enantiomers: origin of chiral surface plasmon resonance.

Ha JM, Solovyov A, Katz A.

Langmuir. 2009 Jan 6;25(1):153-8. doi: 10.1021/la802665t.

PMID:
19072069
33.

The role of outer-sphere surface acidity in alkene epoxidation catalyzed by calixarene-Ti(IV) complexes.

Notestein JM, Solovyov A, Andrini LR, Requejo FG, Katz A, Iglesia E.

J Am Chem Soc. 2007 Dec 19;129(50):15585-95. Epub 2007 Nov 22.

PMID:
18031040
34.

Molecular mechanism of interaction between oligopeptides and double-stranded DNA.

Khavinson VKh, Solovyov AY, Shataeva LK.

Bull Exp Biol Med. 2006 Apr;141(4):457-61.

PMID:
17152370
35.

High-precision methods and devices for in situ measurements of thermally induced aberrations in optical elements.

Zelenogorsky VV, Solovyov AA, Kozhevatov IE, Kamenetsky EE, Rudenchik EA, Palashov OV, Silin DE, Khazanov EA.

Appl Opt. 2006 Jun 10;45(17):4092-101.

PMID:
16761050
36.
37.

The contributions of protein disulfide isomerase and its homologues to oxidative protein folding in the yeast endoplasmic reticulum.

Xiao R, Wilkinson B, Solovyov A, Winther JR, Holmgren A, Lundström-Ljung J, Gilbert HF.

J Biol Chem. 2004 Nov 26;279(48):49780-6. Epub 2004 Sep 17.

38.
39.

Zinc-dependent dimerization of the folding catalyst, protein disulfide isomerase.

Solovyov A, Gilbert HF.

Protein Sci. 2004 Jul;13(7):1902-7. Epub 2004 May 28.

40.

Combinations of protein-disulfide isomerase domains show that there is little correlation between isomerase activity and wild-type growth.

Xiao R, Solovyov A, Gilbert HF, Holmgren A, Lundström-Ljung J.

J Biol Chem. 2001 Jul 27;276(30):27975-80. Epub 2001 May 24.

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