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Items: 18

1.

Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils.

Trubl G, Roux S, Solonenko N, Li YF, Bolduc B, Rodríguez-Ramos J, Eloe-Fadrosh EA, Rich VI, Sullivan MB.

PeerJ. 2019 Jul 4;7:e7265. doi: 10.7717/peerj.7265. eCollection 2019.

2.

Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands.

Warwick-Dugdale J, Solonenko N, Moore K, Chittick L, Gregory AC, Allen MJ, Sullivan MB, Temperton B.

PeerJ. 2019 Apr 25;7:e6800. doi: 10.7717/peerj.6800. eCollection 2019.

3.

Whole-Genome Sequences of Phages p000v and p000y, Which Infect the Bacterial Pathogen Shiga-Toxigenic Escherichia coli.

Howard-Varona C, Vik DR, Solonenko NE, Gazitua MC, Hobbs Z, Honaker RW, Kinkhabwala AA, Sullivan MB.

Microbiol Resour Announc. 2018 Nov 21;7(20). pii: e01400-18. doi: 10.1128/MRA.01400-18. eCollection 2018 Nov.

4.

Fighting Fire with Fire: Phage Potential for the Treatment of E. coli O157 Infection.

Howard-Varona C, Vik DR, Solonenko NE, Li YF, Gazitua MC, Chittick L, Samiec JK, Jensen AE, Anderson P, Howard-Varona A, Kinkhabwala AA, Abedon ST, Sullivan MB.

Antibiotics (Basel). 2018 Nov 16;7(4). pii: E101. doi: 10.3390/antibiotics7040101.

5.

Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing.

Trubl G, Jang HB, Roux S, Emerson JB, Solonenko N, Vik DR, Solden L, Ellenbogen J, Runyon AT, Bolduc B, Woodcroft BJ, Saleska SR, Tyson GW, Wrighton KC, Sullivan MB, Rich VI.

mSystems. 2018 Oct 2;3(5). pii: e00076-18. doi: 10.1128/mSystems.00076-18. eCollection 2018 Sep-Oct.

6.

Clean Low-Biomass Procedures and Their Application to Ancient Ice Core Microorganisms.

Zhong ZP, Solonenko NE, Gazitúa MC, Kenny DV, Mosley-Thompson E, Rich VI, Van Etten JL, Thompson LG, Sullivan MB.

Front Microbiol. 2018 May 25;9:1094. doi: 10.3389/fmicb.2018.01094. eCollection 2018.

7.

Multiple mechanisms drive phage infection efficiency in nearly identical hosts.

Howard-Varona C, Hargreaves KR, Solonenko NE, Markillie LM, White RA 3rd, Brewer HM, Ansong C, Orr G, Adkins JN, Sullivan MB.

ISME J. 2018 Jun;12(6):1605-1618. doi: 10.1038/s41396-018-0099-8. Epub 2018 Mar 22.

8.

Comparative Omics and Trait Analyses of Marine Pseudoalteromonas Phages Advance the Phage OTU Concept.

Duhaime MB, Solonenko N, Roux S, Verberkmoes NC, Wichels A, Sullivan MB.

Front Microbiol. 2017 Jul 6;8:1241. doi: 10.3389/fmicb.2017.01241. eCollection 2017.

9.

Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus.

Howard-Varona C, Roux S, Dore H, Solonenko NE, Holmfeldt K, Markillie LM, Orr G, Sullivan MB.

ISME J. 2017 Aug;11(8):1942. doi: 10.1038/ismej.2017.92.

10.

Towards quantitative viromics for both double-stranded and single-stranded DNA viruses.

Roux S, Solonenko NE, Dang VT, Poulos BT, Schwenck SM, Goldsmith DB, Coleman ML, Breitbart M, Sullivan MB.

PeerJ. 2016 Dec 8;4:e2777. doi: 10.7717/peerj.2777. eCollection 2016.

11.

Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses.

Roux S, Brum JR, Dutilh BE, Sunagawa S, Duhaime MB, Loy A, Poulos BT, Solonenko N, Lara E, Poulain J, Pesant S, Kandels-Lewis S, Dimier C, Picheral M, Searson S, Cruaud C, Alberti A, Duarte CM, Gasol JM, Vaqué D; Tara Oceans Coordinators, Bork P, Acinas SG, Wincker P, Sullivan MB.

Nature. 2016 Sep 29;537(7622):689-693. doi: 10.1038/nature19366. Epub 2016 Sep 21.

12.

Large-scale maps of variable infection efficiencies in aquatic Bacteroidetes phage-host model systems.

Holmfeldt K, Solonenko N, Howard-Varona C, Moreno M, Malmstrom RR, Blow MJ, Sullivan MB.

Environ Microbiol. 2016 Nov;18(11):3949-3961. doi: 10.1111/1462-2920.13392. Epub 2016 Jun 27.

13.

Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient.

Trubl G, Solonenko N, Chittick L, Solonenko SA, Rich VI, Sullivan MB.

PeerJ. 2016 May 17;4:e1999. doi: 10.7717/peerj.1999. eCollection 2016.

14.

Regulation of infection efficiency in a globally abundant marine Bacteriodetes virus.

Howard-Varona C, Roux S, Dore H, Solonenko NE, Holmfeldt K, Markillie LM, Orr G, Sullivan MB.

ISME J. 2017 Jan;11(1):284-295. doi: 10.1038/ismej.2016.81. Epub 2016 May 17. Erratum in: ISME J. 2017 Aug;11(8):1942.

15.

Life-style and genome structure of marine Pseudoalteromonas siphovirus B8b isolated from the northwestern Mediterranean Sea.

Lara E, Holmfeldt K, Solonenko N, Sà EL, Ignacio-Espinoza JC, Cornejo-Castillo FM, Verberkmoes NC, Vaqué D, Sullivan MB, Acinas SG.

PLoS One. 2015 Jan 14;10(1):e0114829. doi: 10.1371/journal.pone.0114829. eCollection 2015.

16.

Contrasting genomic patterns and infection strategies of two co-existing Bacteroidetes podovirus genera.

Holmfeldt K, Howard-Varona C, Solonenko N, Sullivan MB.

Environ Microbiol. 2014 Aug;16(8):2501-13. doi: 10.1111/1462-2920.12391. Epub 2014 Feb 18.

PMID:
24428166
17.

Twelve previously unknown phage genera are ubiquitous in global oceans.

Holmfeldt K, Solonenko N, Shah M, Corrier K, Riemann L, Verberkmoes NC, Sullivan MB.

Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12798-803. doi: 10.1073/pnas.1305956110. Epub 2013 Jul 15.

18.

Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses.

Allers E, Moraru C, Duhaime MB, Beneze E, Solonenko N, Barrero-Canosa J, Amann R, Sullivan MB.

Environ Microbiol. 2013 Aug;15(8):2306-18. doi: 10.1111/1462-2920.12100. Epub 2013 Mar 14.

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