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Items: 1 to 50 of 105

1.

Population dynamics of synthetic terraformation motifs.

Solé RV, Montañez R, Duran-Nebreda S, Rodriguez-Amor D, Vidiella B, Sardanyés J.

R Soc Open Sci. 2018 Jul 4;5(7):180121. doi: 10.1098/rsos.180121. eCollection 2018 Jul.

2.

Information theory, predictability and the emergence of complex life.

Seoane LF, Solé RV.

R Soc Open Sci. 2018 Feb 21;5(2):172221. doi: 10.1098/rsos.172221. eCollection 2018 Feb.

3.

Synthetic associative learning in engineered multicellular consortia.

Macia J, Vidiella B, Solé RV.

J R Soc Interface. 2017 Apr;14(129). pii: 20170158. doi: 10.1098/rsif.2017.0158.

4.

Correction to 'Punctuated equilibrium in the large-scale evolution of programming languages'.

Valverde S, Solé RV.

J R Soc Interface. 2016 Apr;13(117). pii: 20160272. doi: 10.1098/rsif.2016.0272. No abstract available.

5.

Toward Synthetic Spatial Patterns in Engineered Cell Populations with Chemotaxis.

Duran-Nebreda S, Solé RV.

ACS Synth Biol. 2016 Jul 15;5(7):654-61. doi: 10.1021/acssynbio.5b00254. Epub 2016 Mar 31.

PMID:
27009520
6.

A Cultural Diffusion Model for the Rise and Fall of Programming Languages.

Valverde S, Solé RV.

Hum Biol. 2015 Jul;87(3):224-34.

PMID:
26932571
7.

Synthetic circuit designs for earth terraformation.

Solé RV, Montañez R, Duran-Nebreda S.

Biol Direct. 2015 Jul 18;10:37. doi: 10.1186/s13062-015-0064-7.

8.

Corrigendum: Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations.

Sardanyés J, Simó C, Martínez R, Solé RV, Elena SF.

Sci Rep. 2015 Jun 30;5:11167. doi: 10.1038/srep11167. No abstract available.

9.

Punctuated equilibrium in the large-scale evolution of programming languages.

Valverde S, Solé RV.

J R Soc Interface. 2015 Jun 6;12(107). pii: 20150249. doi: 10.1098/rsif.2015.0249. Erratum in: J R Soc Interface. 2016 Apr;13(117). pii: 20160272. doi: 10.1098/rsif.2016.0272.

10.

Emergent chemical behavior in variable-volume protocells.

Shirt-Ediss B, Solé RV, Ruiz-Mirazo K.

Life (Basel). 2015 Jan 13;5(1):181-211. doi: 10.3390/life5010181.

11.

External morphology explains the success of biological invasions.

Azzurro E, Tuset VM, Lombarte A, Maynou F, Simberloff D, Rodríguez-Pérez A, Solé RV.

Ecol Lett. 2014 Nov;17(11):1455-63. doi: 10.1111/ele.12351. Epub 2014 Sep 16.

PMID:
25227153
12.

Catastrophic shifts and lethal thresholds in a propagating front model of unstable tumor progression.

Amor DR, Solé RV.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Aug;90(2):022710. Epub 2014 Aug 13.

PMID:
25215761
13.

Modelling lipid competition dynamics in heterogeneous protocell populations.

Shirt-Ediss B, Ruiz-Mirazo K, Mavelli F, Solé RV.

Sci Rep. 2014 Jul 14;4:5675. doi: 10.1038/srep05675.

14.

Design principles of stripe-forming motifs: the role of positive feedback.

Munteanu A, Cotterell J, Solé RV, Sharpe J.

Sci Rep. 2014 May 16;4:5003. doi: 10.1038/srep05003.

15.

Can a minimal replicating construct be identified as the embodiment of cancer?

Solé RV, Valverde S, Rodriguez-Caso C, Sardanyés J.

Bioessays. 2014 May;36(5):503-12. doi: 10.1002/bies.201300098.

PMID:
24723412
16.

Variability in mutational fitness effects prevents full lethal transitions in large quasispecies populations.

Sardanyés J, Simó C, Martínez R, Solé RV, Elena SF.

Sci Rep. 2014 Apr 9;4:4625. doi: 10.1038/srep04625. Erratum in: Sci Rep. 2015;5:11167.

17.

Towards a mathematical theory of meaningful communication.

Corominas-Murtra B, Fortuny J, Solé RV.

Sci Rep. 2014 Apr 4;4:4587. doi: 10.1038/srep04587.

18.

On the origins of hierarchy in complex networks.

Corominas-Murtra B, Goñi J, Solé RV, Rodríguez-Caso C.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13316-21. doi: 10.1073/pnas.1300832110. Epub 2013 Jul 29.

19.

Before the endless forms: embodied model of transition from single cells to aggregates to ecosystem engineering.

Solé RV, Valverde S.

PLoS One. 2013 Apr 15;8(4):e59664. doi: 10.1371/journal.pone.0059664. Print 2013.

20.

Distributed computation: the new wave of synthetic biology devices.

Macía J, Posas F, Solé RV.

Trends Biotechnol. 2012 Jun;30(6):342-9. doi: 10.1016/j.tibtech.2012.03.006. Epub 2012 Apr 18. Review.

PMID:
22516742
21.

The causes of epistasis in genetic networks.

Macía J, Solé RV, Elena SF.

Evolution. 2012 Feb;66(2):586-96. doi: 10.1111/j.1558-5646.2011.01451.x. Epub 2011 Sep 20.

22.

Tempo and mode of plant RNA virus escape from RNA interference-mediated resistance.

Lafforgue G, Martínez F, Sardanyés J, de la Iglesia F, Niu QW, Lin SS, Solé RV, Chua NH, Daròs JA, Elena SF.

J Virol. 2011 Oct;85(19):9686-95. doi: 10.1128/JVI.05326-11. Epub 2011 Jul 20.

23.

Modeling the effector - regulatory T cell cross-regulation reveals the intrinsic character of relapses in Multiple Sclerosis.

Vélez de Mendizábal N, Carneiro J, Solé RV, Goñi J, Bragard J, Martinez-Forero I, Martinez-Pasamar S, Sepulcre J, Torrealdea J, Bagnato F, Garcia-Ojalvo J, Villoslada P.

BMC Syst Biol. 2011 Jul 15;5:114. doi: 10.1186/1752-0509-5-114.

24.

Emergence of Zipf's law in the evolution of communication.

Corominas-Murtra B, Fortuny J, Solé RV.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Mar;83(3 Pt 2):036115. Epub 2011 Mar 28.

PMID:
21517566
25.

Exploring the randomness of directed acyclic networks.

Goñi J, Corominas-Murtra B, Solé RV, Rodríguez-Caso C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Dec;82(6 Pt 2):066115. Epub 2010 Dec 17.

PMID:
21230713
26.

Universality of Zipf's law.

Corominas-Murtra B, Solé RV.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Jul;82(1 Pt 1):011102. Epub 2010 Jul 1.

PMID:
20866560
27.

Simple model of recovery dynamics after mass extinction.

Solé RV, Saldaña J, Montoya JM, Erwin DH.

J Theor Biol. 2010 Nov 21;267(2):193-200. doi: 10.1016/j.jtbi.2010.08.015.

PMID:
20804772
28.

Diversity, competition, extinction: the ecophysics of language change.

Solé RV, Corominas-Murtra B, Fortuny J.

J R Soc Interface. 2010 Dec 6;7(53):1647-64. doi: 10.1098/rsif.2010.0110. Epub 2010 Jun 30. Review.

29.

Simple genomes, complex interactions: epistasis in RNA virus.

Elena SF, Solé RV, Sardanyés J.

Chaos. 2010 Jun;20(2):026106. doi: 10.1063/1.3449300. Review.

30.

Avoiding transcription factor competition at promoter level increases the chances of obtaining oscillation.

Munteanu A, Constante M, Isalan M, Solé RV.

BMC Syst Biol. 2010 May 17;4:66. doi: 10.1186/1752-0509-4-66.

31.

When metabolism meets topology: Reconciling metabolite and reaction networks.

Montañez R, Medina MA, Solé RV, Rodríguez-Caso C.

Bioessays. 2010 Mar;32(3):246-56. doi: 10.1002/bies.200900145.

PMID:
20127701
32.

Human synthetic lethal inference as potential anti-cancer target gene detection.

Conde-Pueyo N, Munteanu A, Solé RV, Rodríguez-Caso C.

BMC Syst Biol. 2009 Dec 16;3:116. doi: 10.1186/1752-0509-3-116.

33.

Replication mode and landscape topology differentially affect RNA virus mutational load and robustness.

Sardanyés J, Solé RV, Elena SF.

J Virol. 2009 Dec;83(23):12579-89. doi: 10.1128/JVI.00767-09. Epub 2009 Sep 23.

34.

Press perturbations and indirect effects in real food webs.

Montoya JM, Woodward G, Emmerson MC, Solé RV.

Ecology. 2009 Sep;90(9):2426-33.

PMID:
19769121
35.

On the basic computational structure of gene regulatory networks.

Rodríguez-Caso C, Corominas-Murtra B, Solé RV.

Mol Biosyst. 2009 Dec;5(12):1617-29. doi: 10.1039/B904960f. Epub 2009 Jul 21.

PMID:
19763330
36.

The topology of drug-target interaction networks: implicit dependence on drug properties and target families.

Mestres J, Gregori-Puigjané E, Valverde S, Solé RV.

Mol Biosyst. 2009 Sep;5(9):1051-7. doi: 10.1039/b905821b. Epub 2009 Jul 8.

PMID:
19668871
37.

Percolation in insect nest networks: evidence for optimal wiring.

Valverde S, Corominas-Murtra B, Perna A, Kuntz P, Theraulaz G, Solé RV.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jun;79(6 Pt 2):066106. Epub 2009 Jun 12.

PMID:
19658563
38.

Reciprocal specialization in ecological networks.

Joppa LN, Bascompte J, Montoya JM, Solé RV, Sanderson J, Pimm SL.

Ecol Lett. 2009 Sep;12(9):961-9. doi: 10.1111/j.1461-0248.2009.01341.x. Epub 2009 Jun 23.

PMID:
19566586
39.

Neutrality and robustness in evo-devo: emergence of lateral inhibition.

Munteanu A, Solé RV.

PLoS Comput Biol. 2008 Nov;4(11):e1000226. doi: 10.1371/journal.pcbi.1000226. Epub 2008 Nov 21.

40.

Evolution and self-assembly of protocells.

Solé RV.

Int J Biochem Cell Biol. 2009 Feb;41(2):274-84. doi: 10.1016/j.biocel.2008.10.004. Epub 2008 Oct 17. Review.

PMID:
18951997
41.

Distributed robustness in cellular networks: insights from synthetic evolved circuits.

Macia J, Solé RV.

J R Soc Interface. 2009 Apr 6;6(33):393-400. doi: 10.1098/rsif.2008.0236. Epub 2008 Sep 16.

42.

Data completeness--the Achilles heel of drug-target networks.

Mestres J, Gregori-Puigjané E, Valverde S, Solé RV.

Nat Biotechnol. 2008 Sep;26(9):983-4. doi: 10.1038/nbt0908-983. No abstract available.

PMID:
18779805
43.

Cancer stem cells as the engine of unstable tumor progression.

Solé RV, Rodríguez-Caso C, Deisboeck TS, Saldaña J.

J Theor Biol. 2008 Aug 21;253(4):629-37. doi: 10.1016/j.jtbi.2008.03.034. Epub 2008 Apr 20.

PMID:
18534628
44.

Robustness of the European power grids under intentional attack.

Solé RV, Rosas-Casals M, Corominas-Murtra B, Valverde S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Feb;77(2 Pt 2):026102. Epub 2008 Feb 7.

PMID:
18352085
45.

Topology and evolution of technology innovation networks.

Valverde S, Solé RV, Bedau MA, Packard N.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Nov;76(5 Pt 2):056118. Epub 2007 Nov 28.

PMID:
18233729
46.

Simple quasispecies models for the survival-of-the-flattest effect: The role of space.

Sardanyés J, Elena SF, Solé RV.

J Theor Biol. 2008 Feb 7;250(3):560-8. Epub 2007 Oct 30.

PMID:
18054366
47.

Self-organization versus hierarchy in open-source social networks.

Valverde S, Solé RV.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Oct;76(4 Pt 2):046118. Epub 2007 Oct 26.

PMID:
17995071
48.

Controlling chaos in ecology: from deterministic to individual-based models.

Solé RV, Gamarra JG, Ginovart M, López D.

Bull Math Biol. 1999 Nov;61(6):1187-207.

PMID:
17879875
49.

Life cycle of a minimal protocell--a dissipative particle dynamics study.

Fellermann H, Rasmussen S, Ziock HJ, Solé RV.

Artif Life. 2007 Fall;13(4):319-45.

PMID:
17716015
50.

Spontaneous emergence of modularity in cellular networks.

Solé RV, Valverde S.

J R Soc Interface. 2008 Jan 6;5(18):129-33.

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