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Items: 1 to 50 of 72

1.

DNA ligase 4 stabilizes the ribosomal DNA array upon fork collapse at the replication fork barrier.

Fritsch O, Burkhalter MD, Kais S, Sogo JM, Schär P.

DNA Repair (Amst). 2010 Aug 5;9(8):879-88. doi: 10.1016/j.dnarep.2010.05.003. Epub 2010 Jun 12.

PMID:
20541983
2.

Chromatin structure of ribosomal genes in Chironomus thummi (Diptera: Chironomidae): tissue specificity and behaviour under drug treatment.

Sanz C, Gorab E, Ruiz MF, Sogo JM, Díez JL.

Chromosome Res. 2007;15(4):429-38. Epub 2007 May 15.

PMID:
17487564
5.
6.

Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects.

Sogo JM, Lopes M, Foiani M.

Science. 2002 Jul 26;297(5581):599-602.

7.

Supercoiling, knotting and replication fork reversal in partially replicated plasmids.

Olavarrieta L, Martínez-Robles ML, Sogo JM, Stasiak A, Hernández P, Krimer DB, Schvartzman JB.

Nucleic Acids Res. 2002 Feb 1;30(3):656-66.

8.

Nucleosome positioning at the replication fork.

Lucchini R, Wellinger RE, Sogo JM.

EMBO J. 2001 Dec 17;20(24):7294-302.

9.

Architecture of the replication fork stalled at the 3' end of yeast ribosomal genes.

Gruber M, Wellinger RE, Sogo JM.

Mol Cell Biol. 2000 Aug;20(15):5777-87.

10.

Replication of yeast rDNA initiates downstream of transcriptionally active genes.

Muller M, Lucchini R, Sogo JM.

Mol Cell. 2000 May;5(5):767-77.

11.

In vivo mapping of nucleosomes using psoralen-DNA crosslinking and primer extension.

Wellinger RE, Lucchini R, Dammann R, Sogo JM.

Methods Mol Biol. 1999;119:161-73. Review. No abstract available.

PMID:
10804510
12.

Interaction of Ap1, Ap2, and Sp1 with the regulatory regions of the human pro-alpha1(I) collagen gene.

Vergeer WP, Sogo JM, Pretorius PJ, de Vries WN.

Arch Biochem Biophys. 2000 May 1;377(1):69-79.

PMID:
10775443
13.

Mechanisms ensuring rapid and complete DNA replication despite random initiation in Xenopus early embryos.

Lucas I, Chevrier-Miller M, Sogo JM, Hyrien O.

J Mol Biol. 2000 Feb 25;296(3):769-86.

PMID:
10677280
14.
15.

Electron microscopic analysis reveals that replication factor C is sequestered by single-stranded DNA.

Keller RC, Mossi R, Maga G, Wellinger RE, Hübscher U, Sogo JM.

Nucleic Acids Res. 1999 Sep 1;27(17):3433-7.

16.
17.

Formation of knots in partially replicated DNA molecules.

Sogo JM, Stasiak A, Martínez-Robles ML, Krimer DB, Hernández P, Schvartzman JB.

J Mol Biol. 1999 Feb 26;286(3):637-43.

18.

Histone acetylation facilitates RNA polymerase II transcription of the Drosophila hsp26 gene in chromatin.

Nightingale KP, Wellinger RE, Sogo JM, Becker PB.

EMBO J. 1998 May 15;17(10):2865-76.

19.

In vivo mapping of nucleosomes using psoralen-DNA crosslinking and primer extension.

Wellinger RE, Sogo JM.

Nucleic Acids Res. 1998 Mar 15;26(6):1544-5.

20.

Altered 3'-terminal RNA structure in phage Qbeta adapted to host factor-less Escherichia coli.

Schuppli D, Miranda G, Tsui HC, Winkler ME, Sogo JM, Weber H.

Proc Natl Acad Sci U S A. 1997 Sep 16;94(19):10239-42.

21.

Chromatin structure and methylation of rat rRNA genes studied by formaldehyde fixation and psoralen cross-linking.

Stancheva I, Lucchini R, Koller T, Sogo JM.

Nucleic Acids Res. 1997 May 1;25(9):1727-35.

22.

Recognition of bacteriophage Qbeta plus strand RNA as a template by Qbeta replicase: role of RNA interactions mediated by ribosomal proteins S1 and host factor.

Miranda G, Schuppli D, Barrera I, Hausherr C, Sogo JM, Weber H.

J Mol Biol. 1997 Apr 18;267(5):1089-103.

PMID:
9150398
23.

The stability of nucleosomes at the replication fork.

Gasser R, Koller T, Sogo JM.

J Mol Biol. 1996 May 3;258(2):224-39.

PMID:
8627621
26.

Replication of transcriptionally active chromatin.

Lucchini R, Sogo JM.

Nature. 1995 Mar 16;374(6519):276-80.

PMID:
7885449
27.

Replication fork barriers in the Xenopus rDNA.

Wiesendanger B, Lucchini R, Koller T, Sogo JM.

Nucleic Acids Res. 1994 Nov 25;22(23):5038-46.

29.

Disruption of the nucleosomes at the replication fork.

Gruss C, Wu J, Koller T, Sogo JM.

EMBO J. 1993 Dec;12(12):4533-45.

30.

Chromatin structure of the yeast FBP1 gene: transcription-dependent changes in the regulatory and coding regions.

del Olmo ML, Sogo JM, Franco L, Pérez-Ortín JE.

Yeast. 1993 Nov;9(11):1229-40.

PMID:
8109172
31.

Different mechanisms of recognition of bacteriophage Q beta plus and minus strand RNAs by Q beta replicase.

Barrera I, Schuppli D, Sogo JM, Weber H.

J Mol Biol. 1993 Jul 20;232(2):512-21.

PMID:
8345521
32.

Chromatin structures and transcription of rDNA in yeast Saccharomyces cerevisiae.

Dammann R, Lucchini R, Koller T, Sogo JM.

Nucleic Acids Res. 1993 May 25;21(10):2331-8.

33.
35.

Chromatin replication.

Gruss C, Sogo JM.

Bioessays. 1992 Jan;14(1):1-8. Review.

PMID:
1312334
36.

Analysis of replicative intermediates produced during bacteriophage phi 29 DNA replication in vitro.

Gutiérrez C, Sogo JM, Salas M.

J Mol Biol. 1991 Dec 20;222(4):983-94.

PMID:
1762160
37.
38.

Mechanism of stimulation of DNA replication by bacteriophage phi 29 single-stranded DNA-binding protein p5.

Gutiérrez C, Martín G, Sogo JM, Salas M.

J Biol Chem. 1991 Feb 5;266(4):2104-11.

39.

Nucleosome assembly in mammalian cell extracts before and after DNA replication.

Gruss C, Gutierrez C, Burhans WC, DePamphilis ML, Koller T, Sogo JM.

EMBO J. 1990 Sep;9(9):2911-22.

40.

Origin auxiliary sequences can facilitate initiation of simian virus 40 DNA replication in vitro as they do in vivo.

Guo ZS, Gutierrez C, Heine U, Sogo JM, Depamphilis ML.

Mol Cell Biol. 1989 Sep;9(9):3593-602.

41.

An enhancer stimulates transcription in trans when attached to the promoter via a protein bridge.

Müeller-Storm HP, Sogo JM, Schaffner W.

Cell. 1989 Aug 25;58(4):767-77. Erratum in: Cell 1989 Oct 20;59(2):405.

PMID:
2548735
42.

Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle.

Conconi A, Widmer RM, Koller T, Sogo JM.

Cell. 1989 Jun 2;57(5):753-61.

PMID:
2720786
43.

Electron microscopy of chromatin.

Sogo JM, Thoma F.

Methods Enzymol. 1989;170:142-65. No abstract available.

PMID:
2475744
44.

Camptothecin, a specific inhibitor of type I DNA topoisomerase, induces DNA breakage at replication forks.

Avemann K, Knippers R, Koller T, Sogo JM.

Mol Cell Biol. 1988 Aug;8(8):3026-34.

45.

Analysis of the psoralen-crosslinking pattern in chromatin DNA by exonuclease digestion.

Widmer RM, Koller T, Sogo JM.

Nucleic Acids Res. 1988 Jul 25;16(14B):7013-24.

46.

Structure of the extrachromosomal ribosomal RNA chromatin of Physarum polycephalum.

Lucchini R, Pauli U, Braun R, Koller T, Sogo JM.

J Mol Biol. 1987 Aug 20;196(4):829-43.

PMID:
3681980
47.

Structure of in-vivo transcribing chromatin as studied in simian virus 40 minichromosomes.

De Bernardin W, Koller T, Sogo JM.

J Mol Biol. 1986 Oct 5;191(3):469-82.

PMID:
3029385
48.
49.
50.

Psoralen-crosslinking of soluble and of H1-depleted soluble rat liver chromatin.

Conconi A, Losa R, Koller T, Sogo JM.

J Mol Biol. 1984 Oct 5;178(4):920-8.

PMID:
6492168

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