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Items: 1 to 50 of 70

1.

A Photosynthesis-Specific Rubredoxin-Like Protein Is Required for Efficient Association of the D1 and D2 Proteins during the Initial Steps of Photosystem II Assembly.

Kiss É, Knoppová J, Aznar GP, Pilný J, Yu J, Halada P, Nixon PJ, Sobotka R, Komenda J.

Plant Cell. 2019 Sep;31(9):2241-2258. doi: 10.1105/tpc.19.00155. Epub 2019 Jul 18.

2.

The Signal Transduction Protein PII Controls Ammonium, Nitrate and Urea Uptake in Cyanobacteria.

Watzer B, Spät P, Neumann N, Koch M, Sobotka R, Macek B, Hennrich O, Forchhammer K.

Front Microbiol. 2019 Jun 25;10:1428. doi: 10.3389/fmicb.2019.01428. eCollection 2019.

3.

An enigmatic catalase of Blastocrithidia.

Bianchi C, Kostygov AY, Kraeva N, Záhonová K, Horáková E, Sobotka R, Lukeš J, Yurchenko V.

Mol Biochem Parasitol. 2019 Sep;232:111199. doi: 10.1016/j.molbiopara.2019.111199. Epub 2019 Jul 2.

PMID:
31276694
4.

The antenna-like domain of the cyanobacterial ferrochelatase can bind chlorophyll and carotenoids in an energy-dissipative configuration.

Pazderník M, Mareš J, Pilný J, Sobotka R.

J Biol Chem. 2019 Jul 19;294(29):11131-11143. doi: 10.1074/jbc.RA119.008434. Epub 2019 Jun 5.

PMID:
31167780
5.

Isolation and characterization of CAC antenna proteins and photosystem I supercomplex from the cryptophytic alga Rhodomonas salina.

Kuthanová Trsková E, Bína D, Santabarbara S, Sobotka R, Kaňa R, Belgio E.

Physiol Plant. 2019 May;166(1):309-319. doi: 10.1111/ppl.12928. Epub 2019 Mar 4.

PMID:
30677144
6.

Magnesium Stable Isotope Fractionation on a Cellular Level Explored by Cyanobacteria and Black Fungi with Implications for Higher Plants.

Pokharel R, Gerrits R, Schuessler JA, Frings PJ, Sobotka R, Gorbushina AA, von Blanckenburg F.

Environ Sci Technol. 2018 Nov 6;52(21):12216-12224. doi: 10.1021/acs.est.8b02238. Epub 2018 Oct 26.

PMID:
30351034
7.

New Urea Derivatives Are Effective Anti-senescence Compounds Acting Most Likely via a Cytokinin-Independent Mechanism.

Nisler J, Zatloukal M, Sobotka R, Pilný J, Zdvihalová B, Novák O, Strnad M, Spíchal L.

Front Plant Sci. 2018 Sep 11;9:1225. doi: 10.3389/fpls.2018.01225. eCollection 2018.

8.

Plant and algal chlorophyll synthases function in Synechocystis and interact with the YidC/Alb3 membrane insertase.

Proctor MS, Chidgey JW, Shukla MK, Jackson PJ, Sobotka R, Hunter CN, Hitchcock A.

FEBS Lett. 2018 Sep;592(18):3062-3073. doi: 10.1002/1873-3468.13222. Epub 2018 Sep 6.

9.

Ycf48 involved in the biogenesis of the oxygen-evolving photosystem II complex is a seven-bladed beta-propeller protein.

Yu J, Knoppová J, Michoux F, Bialek W, Cota E, Shukla MK, Strašková A, Pascual Aznar G, Sobotka R, Komenda J, Murray JW, Nixon PJ.

Proc Natl Acad Sci U S A. 2018 Aug 14;115(33):E7824-E7833. doi: 10.1073/pnas.1800609115. Epub 2018 Jul 30.

10.

Chlorophyll-Mediated Changes in the Redox Status of Pancreatic Cancer Cells Are Associated with Its Anticancer Effects.

Vaňková K, Marková I, Jašprová J, Dvořák A, Subhanová I, Zelenka J, Novosádová I, Rasl J, Vomastek T, Sobotka R, Muchová L, Vítek L.

Oxid Med Cell Longev. 2018 Jul 2;2018:4069167. doi: 10.1155/2018/4069167. eCollection 2018.

11.

Antenna proton sensitivity determines photosynthetic light harvesting strategy.

Kuthanová Trsková E, Belgio E, Yeates AM, Sobotka R, Ruban AV, Kana R.

J Exp Bot. 2018 Aug 14;69(18):4483-4493. doi: 10.1093/jxb/ery240.

12.

The importance of serum osteopontin and stanniocalcin-1 in renal cell carcinoma.

Sobotka R, Capoun O, Hanus T, Zima T, Kalousova M, Soukup V.

Neoplasma. 2018 Nov 15;65(6):958-964. doi: 10.4149/neo_2018_171123N759. Epub 2018 Jun 18.

PMID:
29940774
13.

The cyanobacterial protoporphyrinogen oxidase HemJ is a new b-type heme protein functionally coupled with coproporphyrinogen III oxidase.

Skotnicová P, Sobotka R, Shepherd M, Hájek J, Hrouzek P, Tichý M.

J Biol Chem. 2018 Aug 10;293(32):12394-12404. doi: 10.1074/jbc.RA118.003441. Epub 2018 Jun 20.

14.

Molecular Origin of Photoprotection in Cyanobacteria Probed by Watermarked Femtosecond Stimulated Raman Spectroscopy.

Hontani Y, Kloz M, Polívka T, Shukla MK, Sobotka R, Kennis JTM.

J Phys Chem Lett. 2018 Apr 5;9(7):1788-1792. doi: 10.1021/acs.jpclett.8b00663. Epub 2018 Mar 26.

15.

The Ribosome-Bound Protein Pam68 Promotes Insertion of Chlorophyll into the CP47 Subunit of Photosystem II.

Bučinská L, Kiss É, Koník P, Knoppová J, Komenda J, Sobotka R.

Plant Physiol. 2018 Apr;176(4):2931-2942. doi: 10.1104/pp.18.00061. Epub 2018 Feb 20.

16.

Binding of pigments to the cyanobacterial high-light-inducible protein HliC.

Shukla MK, Llansola-Portoles MJ, Tichý M, Pascal AA, Robert B, Sobotka R.

Photosynth Res. 2018 Jul;137(1):29-39. doi: 10.1007/s11120-017-0475-7. Epub 2017 Dec 26.

PMID:
29280045
17.

Placental Growth Factor in Bladder Cancer Compared to the Diagnostic Accuracy and Prognostic Performance of Vascular Endothelial Growth Factor A.

Soukup V, Čapoun O, Pešl M, Sobotka R, Vávřová L, Hanuš T, Zima T, Kalousová M.

Anticancer Res. 2018 Jan;38(1):239-246.

PMID:
29277778
18.

Unique double concentric ring organization of light harvesting complexes in Gemmatimonas phototrophica.

Dachev M, Bína D, Sobotka R, Moravcová L, Gardian Z, Kaftan D, Šlouf V, Fuciman M, Polívka T, Koblížek M.

PLoS Biol. 2017 Dec 18;15(12):e2003943. doi: 10.1371/journal.pbio.2003943. eCollection 2017 Dec.

19.

Extensive gain and loss of photosystem I subunits in chromerid algae, photosynthetic relatives of apicomplexans.

Sobotka R, Esson HJ, Koník P, Trsková E, Moravcová L, Horák A, Dufková P, Oborník M.

Sci Rep. 2017 Oct 16;7(1):13214. doi: 10.1038/s41598-017-13575-x.

20.

Mucilaginibacter terrae sp. nov., isolated from Antarctic soil.

Sedláček I, Pantůček R, Králová S, Mašlaňová I, Holochová P, Staňková E, Sobotka R, Barták M, Busse HJ, Švec P.

Int J Syst Evol Microbiol. 2017 Oct;67(10):4002-4007. doi: 10.1099/ijsem.0.002240. Epub 2017 Sep 14.

PMID:
28905705
21.

Prognostic Importance of Vitamins A, E and Retinol-binding Protein 4 in Renal Cell Carcinoma Patients.

Sobotka R, Čapoun O, Kalousová M, Hanuš T, Zima T, Koštířová M, Soukup V.

Anticancer Res. 2017 Jul;37(7):3801-3806.

PMID:
28668878
22.

Editorial: Assembly of the Photosystem II Membrane-Protein Complex of Oxygenic Photosynthesis.

Eaton-Rye JJ, Sobotka R.

Front Plant Sci. 2017 May 26;8:884. doi: 10.3389/fpls.2017.00884. eCollection 2017. No abstract available.

23.

Monochromatic green light induces an aberrant accumulation of geranylgeranyled chlorophylls in plants.

Materová Z, Sobotka R, Zdvihalová B, Oravec M, Nezval J, Karlický V, Vrábl D, Štroch M, Špunda V.

Plant Physiol Biochem. 2017 Jul;116:48-56. doi: 10.1016/j.plaphy.2017.05.002. Epub 2017 May 6.

PMID:
28527413
24.

The Trypanosoma brucei TbHrg protein is a heme transporter involved in the regulation of stage-specific morphological transitions.

Horáková E, Changmai P, Vancová M, Sobotka R, Van Den Abbeele J, Vanhollebeke B, Lukeš J.

J Biol Chem. 2017 Apr 28;292(17):6998-7010. doi: 10.1074/jbc.M116.762997. Epub 2017 Feb 23.

25.

The meaning of sampling density in multiple repeat prostate biopsies.

Hrbáček J, Čapoun O, Minárik I, Kýr M, Hanuš T, Babjuk M, Sobotka R.

Cent European J Urol. 2016;69(4):347-352. doi: 10.5173/ceju.2016.910. Epub 2016 Nov 30.

26.

Twisting a β-Carotene, an Adaptive Trick from Nature for Dissipating Energy during Photoprotection.

Llansola-Portoles MJ, Sobotka R, Kish E, Shukla MK, Pascal AA, Polívka T, Robert B.

J Biol Chem. 2017 Jan 27;292(4):1396-1403. doi: 10.1074/jbc.M116.753723. Epub 2016 Dec 19.

27.

Awakening of a Dormant Cyanobacterium from Nitrogen Chlorosis Reveals a Genetically Determined Program.

Klotz A, Georg J, Bučinská L, Watanabe S, Reimann V, Januszewski W, Sobotka R, Jendrossek D, Hess WR, Forchhammer K.

Curr Biol. 2016 Nov 7;26(21):2862-2872. doi: 10.1016/j.cub.2016.08.054. Epub 2016 Oct 6.

28.

Rufibacter ruber sp. nov., isolated from fragmentary rock.

Kýrová K, Sedláček I, Pantůček R, Králová S, Holochová P, Mašlaňová I, Staňková E, Kleinhagauer T, Gelbíčová T, Sobotka R, Švec P, Busse HJ.

Int J Syst Evol Microbiol. 2016 Nov;66(11):4401-4405. doi: 10.1099/ijsem.0.001364. Epub 2016 Aug 2.

PMID:
27488543
29.

Analysis of sublethal arsenic toxicity to Ceratophyllum demersum: subcellular distribution of arsenic and inhibition of chlorophyll biosynthesis.

Mishra S, Alfeld M, Sobotka R, Andresen E, Falkenberg G, Küpper H.

J Exp Bot. 2016 Aug;67(15):4639-46. doi: 10.1093/jxb/erw238. Epub 2016 Jun 23.

30.

Strain of Synechocystis PCC 6803 with Aberrant Assembly of Photosystem II Contains Tandem Duplication of a Large Chromosomal Region.

Tichý M, Bečková M, Kopečná J, Noda J, Sobotka R, Komenda J.

Front Plant Sci. 2016 May 12;7:648. doi: 10.3389/fpls.2016.00648. eCollection 2016.

31.

Carotenoid-induced non-photochemical quenching in the cyanobacterial chlorophyll synthase-HliC/D complex.

Niedzwiedzki DM, Tronina T, Liu H, Staleva H, Komenda J, Sobotka R, Blankenship RE, Polívka T.

Biochim Biophys Acta. 2016 Sep;1857(9):1430-1439. doi: 10.1016/j.bbabio.2016.04.280. Epub 2016 Apr 28.

32.

Prognosis of Castration-resistant Prostate Cancer Patients - Use of the AdnaTest® System for Detection of Circulating Tumor Cells.

Čapoun O, Mikulová V, Jančíková M, Honová H, Kološtová K, Sobotka R, Michael P, Zima T, Hanuš T, Soukup V.

Anticancer Res. 2016 Apr;36(4):2019-26.

PMID:
27069196
33.

Synthesis of Chlorophyll-Binding Proteins in a Fully Segregated Δycf54 Strain of the Cyanobacterium Synechocystis PCC 6803.

Hollingshead S, Kopečná J, Armstrong DR, Bučinská L, Jackson PJ, Chen GE, Dickman MJ, Williamson MP, Sobotka R, Hunter CN.

Front Plant Sci. 2016 Mar 17;7:292. doi: 10.3389/fpls.2016.00292. eCollection 2016.

34.

Violaxanthin inhibits nonphotochemical quenching in light-harvesting antenna of Chromera velia.

Kaňa R, Kotabová E, Kopečná J, Trsková E, Belgio E, Sobotka R, Ruban AV.

FEBS Lett. 2016 Apr;590(8):1076-85. doi: 10.1002/1873-3468.12130. Epub 2016 Apr 4.

35.

Acquisition of exogenous haem is essential for tick reproduction.

Perner J, Sobotka R, Sima R, Konvickova J, Sojka D, Oliveira PL, Hajdusek O, Kopacek P.

Elife. 2016 Mar 7;5. pii: e12318. doi: 10.7554/eLife.12318.

36.

Porphyrin Binding to Gun4 Protein, Facilitated by a Flexible Loop, Controls Metabolite Flow through the Chlorophyll Biosynthetic Pathway.

Kopečná J, Cabeza de Vaca I, Adams NB, Davison PA, Brindley AA, Hunter CN, Guallar V, Sobotka R.

J Biol Chem. 2015 Nov 20;290(47):28477-88. doi: 10.1074/jbc.M115.664987. Epub 2015 Oct 7.

37.

Cyanobacterial high-light-inducible proteins--Protectors of chlorophyll-protein synthesis and assembly.

Komenda J, Sobotka R.

Biochim Biophys Acta. 2016 Mar;1857(3):288-95. doi: 10.1016/j.bbabio.2015.08.011. Epub 2015 Sep 2. Review.

38.

Lack of Phosphatidylglycerol Inhibits Chlorophyll Biosynthesis at Multiple Sites and Limits Chlorophyllide Reutilization in Synechocystis sp. Strain PCC 6803.

Kopečná J, Pilný J, Krynická V, Tomčala A, Kis M, Gombos Z, Komenda J, Sobotka R.

Plant Physiol. 2015 Oct;169(2):1307-17. doi: 10.1104/pp.15.01150. Epub 2015 Aug 12.

39.

Interaction of the PsbH subunit with a chlorophyll bound to histidine 114 of CP47 is responsible for the red 77K fluorescence of Photosystem II.

D'Haene SE, Sobotka R, Bučinská L, Dekker JP, Komenda J.

Biochim Biophys Acta. 2015 Oct;1847(10):1327-34. doi: 10.1016/j.bbabio.2015.07.003. Epub 2015 Jul 9.

40.

Diagnostic Importance of Selected Protein Serum Markers in the Primary Diagnostics of Prostate Cancer.

Čapoun O, Soukup V, Kalousová M, Sobotka R, Pešl M, Zima T, Hanuš T.

Urol Int. 2015;95(4):429-35. doi: 10.1159/000431364. Epub 2015 Jul 7.

PMID:
26159681
41.

Mechanism of photoprotection in the cyanobacterial ancestor of plant antenna proteins.

Staleva H, Komenda J, Shukla MK, Šlouf V, Kaňa R, Polívka T, Sobotka R.

Nat Chem Biol. 2015 Apr;11(4):287-91. doi: 10.1038/nchembio.1755. Epub 2015 Feb 23.

PMID:
25706339
42.

Panel of Urinary Diagnostic Markers for Non-Invasive Detection of Primary and Recurrent Urothelial Urinary Bladder Carcinoma.

Soukup V, Kalousová M, Capoun O, Sobotka R, Breyl Z, Pešl M, Zima T, Hanuš T.

Urol Int. 2015;95(1):56-64. doi: 10.1159/000368166. Epub 2015 Feb 6.

PMID:
25662337
43.

Accumulation of the Type IV prepilin triggers degradation of SecY and YidC and inhibits synthesis of Photosystem II proteins in the cyanobacterium Synechocystis PCC 6803.

Linhartová M, Bučinská L, Halada P, Ječmen T, Setlík J, Komenda J, Sobotka R.

Mol Microbiol. 2014 Sep;93(6):1207-23. doi: 10.1111/mmi.12730. Epub 2014 Aug 12.

44.

Discovery of a chlorophyll binding protein complex involved in the early steps of photosystem II assembly in Synechocystis.

Knoppová J, Sobotka R, Tichy M, Yu J, Konik P, Halada P, Nixon PJ, Komenda J.

Plant Cell. 2014 Mar;26(3):1200-12. doi: 10.1105/tpc.114.123919. Epub 2014 Mar 28.

45.

A cyanobacterial chlorophyll synthase-HliD complex associates with the Ycf39 protein and the YidC/Alb3 insertase.

Chidgey JW, Linhartová M, Komenda J, Jackson PJ, Dickman MJ, Canniffe DP, Koník P, Pilný J, Hunter CN, Sobotka R.

Plant Cell. 2014 Mar;26(3):1267-79. doi: 10.1105/tpc.114.124495. Epub 2014 Mar 28.

46.

Novel type of red-shifted chlorophyll a antenna complex from Chromera velia. I. Physiological relevance and functional connection to photosystems.

Kotabová E, Jarešová J, Kaňa R, Sobotka R, Bína D, Prášil O.

Biochim Biophys Acta. 2014 Jun;1837(6):734-43. doi: 10.1016/j.bbabio.2014.01.012. Epub 2014 Jan 28.

47.

Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia.

Janouskovec J, Sobotka R, Lai DH, Flegontov P, Koník P, Komenda J, Ali S, Prásil O, Pain A, Oborník M, Lukes J, Keeling PJ.

Mol Biol Evol. 2013 Nov;30(11):2447-62. doi: 10.1093/molbev/mst144. Epub 2013 Aug 22.

PMID:
23974208
48.

Distribution and origin of oxygen-dependent and oxygen-independent forms of Mg-protoporphyrin monomethylester cyclase among phototrophic proteobacteria.

Boldareva-Nuianzina EN, Bláhová Z, Sobotka R, Koblízek M.

Appl Environ Microbiol. 2013 Apr;79(8):2596-604. doi: 10.1128/AEM.00104-13. Epub 2013 Feb 8.

49.

Making proteins green; biosynthesis of chlorophyll-binding proteins in cyanobacteria.

Sobotka R.

Photosynth Res. 2014 Feb;119(1-2):223-32. doi: 10.1007/s11120-013-9797-2. Epub 2013 Feb 4. Review.

PMID:
23377990
50.

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