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Items: 44

1.

Salt marsh denitrification is impacted by oiling intensity six years after the Deepwater Horizon oil spill.

Tatariw C, Flournoy N, Kleinhuizen AA, Tollette D, Overton EB, Sobecky PA, Mortazavi B.

Environ Pollut. 2018 Dec;243(Pt B):1606-1614. doi: 10.1016/j.envpol.2018.09.034. Epub 2018 Sep 18.

PMID:
30296756
2.

Ecological response of nitrification to oil spills and its impact on the nitrogen cycle.

Urakawa H, Rajan S, Feeney ME, Sobecky PA, Mortazavi B.

Environ Microbiol. 2019 Jan;21(1):18-33. doi: 10.1111/1462-2920.14391. Epub 2018 Oct 5. Review.

PMID:
30136386
3.

Vegetation Loss Decreases Salt Marsh Denitrification Capacity: Implications for Marsh Erosion.

Hinshaw SE, Tatariw C, Flournoy N, Kleinhuizen A, Taylor C, Sobecky PA, Mortazavi B.

Environ Sci Technol. 2017 Aug 1;51(15):8245-8253. doi: 10.1021/acs.est.7b00618. Epub 2017 Jul 11.

PMID:
28616973
4.

Chromium(VI) transport and fate in unsaturated zone and aquifer: 3D Sandbox results.

Zhao X, Sobecky PA, Zhao L, Crawford P, Li M.

J Hazard Mater. 2016 Apr 5;306:203-209. doi: 10.1016/j.jhazmat.2015.12.004. Epub 2015 Dec 7.

PMID:
26736171
5.

Input of organic matter enhances degradation of weathered diesel fuel in sub-tropical sediments.

Horel A, Mortazavi B, Sobecky PA.

Sci Total Environ. 2015 Nov 15;533:82-90. doi: 10.1016/j.scitotenv.2015.06.102. Epub 2015 Jul 4.

PMID:
26151652
6.

Insights into the environmental reservoir of pathogenic Vibrio parahaemolyticus using comparative genomics.

Hazen TH, Lafon PC, Garrett NM, Lowe TM, Silberger DJ, Rowe LA, Frace M, Parsons MB, Bopp CA, Rasko DA, Sobecky PA.

Front Microbiol. 2015 Mar 24;6:204. doi: 10.3389/fmicb.2015.00204. eCollection 2015.

7.

Microbial responses to the Deepwater Horizon oil spill: from coastal wetlands to the deep sea.

King GM, Kostka JE, Hazen TC, Sobecky PA.

Ann Rev Mar Sci. 2015;7:377-401. doi: 10.1146/annurev-marine-010814-015543. Epub 2014 Sep 17. Review.

PMID:
25251273
8.

Microbial community responses to organophosphate substrate additions in contaminated subsurface sediments.

Martinez RJ, Wu CH, Beazley MJ, Andersen GL, Conrad ME, Hazen TC, Taillefert M, Sobecky PA.

PLoS One. 2014 Jun 20;9(6):e100383. doi: 10.1371/journal.pone.0100383. eCollection 2014.

9.

Enhancing the biodegradation of oil in sandy sediments with choline: a naturally methylated nitrogen compound.

Mortazavi B, Horel A, Anders JS, Mirjafari A, Beazley MJ, Sobecky PA.

Environ Pollut. 2013 Nov;182:53-62. doi: 10.1016/j.envpol.2013.06.022. Epub 2013 Jul 27.

PMID:
23896678
10.

Intrinsic rates of petroleum hydrocarbon biodegradation in Gulf of Mexico intertidal sandy sediments and its enhancement by organic substrates.

Mortazavi B, Horel A, Beazley MJ, Sobecky PA.

J Hazard Mater. 2013 Jan 15;244-245:537-44. doi: 10.1016/j.jhazmat.2012.10.038. Epub 2012 Oct 27.

PMID:
23228451
11.

Microbial community analysis of a coastal salt marsh affected by the Deepwater Horizon oil spill.

Beazley MJ, Martinez RJ, Rajan S, Powell J, Piceno YM, Tom LM, Andersen GL, Hazen TC, Van Nostrand JD, Zhou J, Mortazavi B, Sobecky PA.

PLoS One. 2012;7(7):e41305. doi: 10.1371/journal.pone.0041305. Epub 2012 Jul 18. Erratum in: PLoS One. 2012;7(11). doi:10.1371/annotation/72b08ecf-1e78-4668-a094-c818def0e03f.

12.

Aerobic biotransformation of n-tetradecylbenzyldimethylammonium chloride by an enriched Pseudomonas spp. community.

Tezel U, Tandukar M, Martinez RJ, Sobecky PA, Pavlostathis SG.

Environ Sci Technol. 2012 Aug 21;46(16):8714-22. doi: 10.1021/es300518c. Epub 2012 Jul 31.

PMID:
22794799
13.

Complete genome sequence of Rahnella aquatilis CIP 78.65.

Martinez RJ, Bruce D, Detter C, Goodwin LA, Han J, Han CS, Held B, Land ML, Mikhailova N, Nolan M, Pennacchio L, Pitluck S, Tapia R, Woyke T, Sobecky PA.

J Bacteriol. 2012 Jun;194(11):3020-1. doi: 10.1128/JB.00380-12.

14.

Complete genome sequence of Rahnella sp. strain Y9602, a gammaproteobacterium isolate from metal- and radionuclide-contaminated soil.

Martinez RJ, Bruce D, Detter C, Goodwin LA, Han J, Han CS, Held B, Land ML, Mikhailova N, Nolan M, Pennacchio L, Pitluck S, Tapia R, Woyke T, Sobecky PA.

J Bacteriol. 2012 Apr;194(8):2113-4. doi: 10.1128/JB.00095-12.

15.

Responses of microbial community from northern Gulf of Mexico sandy sediments following exposure to Deepwater Horizon crude oil.

Horel A, Mortazavi B, Sobecky PA.

Environ Toxicol Chem. 2012 May;31(5):1004-11. doi: 10.1002/etc.1770. Epub 2012 Mar 23.

PMID:
22447770
16.

Evaluation of positron emission tomography as a method to visualize subsurface microbial processes.

Kinsella K, Schlyer DJ, Fowler JS, Martinez RJ, Sobecky PA.

J Hazard Mater. 2012 Apr 30;213-214:498-501. doi: 10.1016/j.jhazmat.2012.01.037. Epub 2012 Jan 18.

PMID:
22377376
17.

The contribution of mobile genetic elements to the evolution and ecology of Vibrios.

Hazen TH, Pan L, Gu JD, Sobecky PA.

FEMS Microbiol Ecol. 2010 Dec;74(3):485-99. doi: 10.1111/j.1574-6941.2010.00937.x. Review.

18.

Rapid identification of Vibrio parahaemolyticus by whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry.

Hazen TH, Martinez RJ, Chen Y, Lafon PC, Garrett NM, Parsons MB, Bopp CA, Sullards MC, Sobecky PA.

Appl Environ Microbiol. 2009 Nov;75(21):6745-56. doi: 10.1128/AEM.01171-09. Epub 2009 Sep 11.

19.

Horizontal gene transfer in metal and radionuclide contaminated soils.

Sobecky PA, Coombs JM.

Methods Mol Biol. 2009;532:455-72. doi: 10.1007/978-1-60327-853-9_26. Review.

PMID:
19271201
20.

Horizontal gene transfer and mobile genetic elements in marine systems.

Sobecky PA, Hazen TH.

Methods Mol Biol. 2009;532:435-53. doi: 10.1007/978-1-60327-853-9_25. Review.

PMID:
19271200
21.

Inactivation of mismatch repair increases the diversity of Vibrio parahaemolyticus.

Hazen TH, Kennedy KD, Chen S, Yi SV, Sobecky PA.

Environ Microbiol. 2009 May;11(5):1254-66. doi: 10.1111/j.1462-2920.2008.01853.x. Epub 2009 Jan 22.

PMID:
19161434
22.

Aerobic uranium (VI) bioprecipitation by metal-resistant bacteria isolated from radionuclide- and metal-contaminated subsurface soils.

Martinez RJ, Beazley MJ, Taillefert M, Arakaki AK, Skolnick J, Sobecky PA.

Environ Microbiol. 2007 Dec;9(12):3122-33. Erratum in: Environ Microbiol. 2008 Apr;10(4):1097.

PMID:
17991039
23.

Sequence characterization and comparative analysis of three plasmids isolated from environmental Vibrio spp.

Hazen TH, Wu D, Eisen JA, Sobecky PA.

Appl Environ Microbiol. 2007 Dec;73(23):7703-10. Epub 2007 Oct 5.

24.

Uranium biomineralization as a result of bacterial phosphatase activity: insights from bacterial isolates from a contaminated subsurface.

Beazley MJ, Martinez RJ, Sobecky PA, Webb SM, Taillefert M.

Environ Sci Technol. 2007 Aug 15;41(16):5701-7.

PMID:
17874776
25.

Nitrogen fixation by Vibrio parahaemolyticus and its implications for a new ecological niche.

Criminger JD, Hazen TH, Sobecky PA, Lovell CR.

Appl Environ Microbiol. 2007 Sep;73(18):5959-61. Epub 2007 Aug 3.

26.

Chemically mediated competition between microbes and animals: microbes as consumers in food webs.

Burkepile DE, Parker JD, Woodson CB, Mills HJ, Kubanek J, Sobecky PA, Hay ME.

Ecology. 2006 Nov;87(11):2821-31.

PMID:
17168026
27.

Prokaryotic diversity and metabolically active microbial populations in sediments from an active mud volcano in the Gulf of Mexico.

Martinez RJ, Mills HJ, Story S, Sobecky PA.

Environ Microbiol. 2006 Oct;8(10):1783-96.

PMID:
16958759
28.

Horizontal gene transfer of PIB-type ATPases among bacteria isolated from radionuclide- and metal-contaminated subsurface soils.

Martinez RJ, Wang Y, Raimondo MA, Coombs JM, Barkay T, Sobecky PA.

Appl Environ Microbiol. 2006 May;72(5):3111-8.

29.
31.

Microbial diversity in sediments associated with surface-breaching gas hydrate mounds in the Gulf of Mexico.

Mills HJ, Hodges C, Wilson K, Macdonald IR, Sobecky PA.

FEMS Microbiol Ecol. 2003 Oct 1;46(1):39-52. doi: 10.1016/S0168-6496(03)00191-0.

32.
33.
34.

Introduction of a plasmid-encoded phoA gene for constitutive overproduction of alkaline phosphatase in three subsurface Pseudomonas isolates.

Powers LG, Mills HJ, Palumbo AV, Zhang C, Delaney K, Sobecky PA.

FEMS Microbiol Ecol. 2002 Aug 1;41(2):115-23. doi: 10.1111/j.1574-6941.2002.tb00972.x.

35.

Differentiation of plasmids in marine diazotroph assemblages determined by randomly amplified polymorphic DNA analysis.

Beeson KE, Erdner DL, Bagwell CE, Lovell CR, Sobecky PA.

Microbiology. 2002 Jan;148(Pt 1):179-89.

PMID:
11782510
36.

Endogenous isolation of replicon probes for assessing plasmid ecology of marine sediment microbial communities.

Cook MA, Osborn AM, Bettandorff J, Sobecky PA.

Microbiology. 2001 Aug;147(Pt 8):2089-101.

PMID:
11495987
37.
38.

Characterization of mercury resistance mechanisms in marine sediment microbial communities.

Reyes NS, Frischer ME, Sobecky PA.

FEMS Microbiol Ecol. 1999 Nov 1;30(3):273-284.

39.

Isolation of broad-host-range replicons from marine sediment bacteria.

Sobecky PA, Mincer TJ, Chang MC, Toukdarian A, Helinski DR.

Appl Environ Microbiol. 1998 Aug;64(8):2822-30.

40.
41.
42.

Characterization of the stable maintenance properties of the par region of broad-host-range plasmid RK2.

Sobecky PA, Easter CL, Bear PD, Helinski DR.

J Bacteriol. 1996 Apr;178(7):2086-93.

43.
44.

Adaptation of model genetically engineered microorganisms to lake water: growth rate enhancements and plasmid loss.

Sobecky PA, Schell MA, Moran MA, Hodson RE.

Appl Environ Microbiol. 1992 Nov;58(11):3630-7.

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