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Items: 44

1.

CRISPR-Cas9 ribonucleoprotein-mediated co-editing and counterselection in the rice blast fungus.

Foster AJ, Martin-Urdiroz M, Yan X, Wright HS, Soanes DM, Talbot NJ.

Sci Rep. 2018 Sep 25;8(1):14355. doi: 10.1038/s41598-018-32702-w.

2.

Cautionary Notes on Use of the MoT3 Diagnostic Assay for Magnaporthe oryzae Wheat and Rice Blast Isolates.

Gupta DR, Avila CR, Win J, Soanes DM, Ryder LS, Croll D, Bhattacharjee P, Hossain MS, Mahmud NU, Mehebub MS, Surovy MZ, Rahman MM, Talbot N, Kamoun S, Islam MT.

Phytopathology. 2018 Sep 25. doi: 10.1094/PHYTO-06-18-0199-LE. [Epub ahead of print]

PMID:
30253117
3.

A single fungal MAP kinase controls plant cell-to-cell invasion by the rice blast fungus.

Sakulkoo W, Osés-Ruiz M, Oliveira Garcia E, Soanes DM, Littlejohn GR, Hacker C, Correia A, Valent B, Talbot NJ.

Science. 2018 Mar 23;359(6382):1399-1403. doi: 10.1126/science.aaq0892.

PMID:
29567712
4.

Gene Flow between Divergent Cereal- and Grass-Specific Lineages of the Rice Blast Fungus Magnaporthe oryzae.

Gladieux P, Condon B, Ravel S, Soanes D, Maciel JLN, Nhani A Jr, Chen L, Terauchi R, Lebrun MH, Tharreau D, Mitchell T, Pedley KF, Valent B, Talbot NJ, Farman M, Fournier E.

MBio. 2018 Feb 27;9(1). pii: e01219-17. doi: 10.1128/mBio.01219-17.

5.

Comparative genomic analysis of the 'pseudofungus' Hyphochytrium catenoides.

Leonard G, Labarre A, Milner DS, Monier A, Soanes D, Wideman JG, Maguire F, Stevens S, Sain D, Grau-Bové X, Sebé-Pedrós A, Stajich JE, Paszkiewicz K, Brown MW, Hall N, Wickstead B, Richards TA.

Open Biol. 2018 Jan;8(1). pii: 170184. doi: 10.1098/rsob.170184.

6.

Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis.

Gentekaki E, Curtis BA, Stairs CW, Klimeš V, Eliáš M, Salas-Leiva DE, Herman EK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, Kolisko M, Rachubinski RA, Schlacht A, Soanes DM, Tsaousis AD, Archibald JM, Ball SG, Dacks JB, Clark CG, van der Giezen M, Roger AJ.

PLoS Biol. 2017 Sep 11;15(9):e2003769. doi: 10.1371/journal.pbio.2003769. eCollection 2017 Sep.

7.

Tpc1 is an important Zn(II)2Cys6 transcriptional regulator required for polarized growth and virulence in the rice blast fungus.

Galhano R, Illana A, Ryder LS, Rodríguez-Romero J, Demuez M, Badaruddin M, Martinez-Rocha AL, Soanes DM, Studholme DJ, Talbot NJ, Sesma A.

PLoS Pathog. 2017 Jul 24;13(7):e1006516. doi: 10.1371/journal.ppat.1006516. eCollection 2017 Jul.

8.

Genome sequence of the oleaginous yeast Rhodotorula toruloides strain CGMCC 2.1609.

Sambles C, Middelhaufe S, Soanes D, Kolak D, Lux T, Moore K, Matoušková P, Parker D, Lee R, Love J, Aves SJ.

Genom Data. 2017 May 15;13:1-2. doi: 10.1016/j.gdata.2017.05.009. eCollection 2017 Sep.

9.

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae.

Islam MT, Croll D, Gladieux P, Soanes DM, Persoons A, Bhattacharjee P, Hossain MS, Gupta DR, Rahman MM, Mahboob MG, Cook N, Salam MU, Surovy MZ, Sancho VB, Maciel JL, NhaniJúnior A, Castroagudín VL, Reges JT, Ceresini PC, Ravel S, Kellner R, Fournier E, Tharreau D, Lebrun MH, McDonald BA, Stitt T, Swan D, Talbot NJ, Saunders DG, Win J, Kamoun S.

BMC Biol. 2016 Oct 3;14(1):84.

10.

The β-1,3-glucanosyltransferases (Gels) affect the structure of the rice blast fungal cell wall during appressorium-mediated plant infection.

Samalova M, Mélida H, Vilaplana F, Bulone V, Soanes DM, Talbot NJ, Gurr SJ.

Cell Microbiol. 2017 Mar;19(3). doi: 10.1111/cmi.12659. Epub 2016 Oct 11.

11.

Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication.

Corrochano LM, Kuo A, Marcet-Houben M, Polaino S, Salamov A, Villalobos-Escobedo JM, Grimwood J, Álvarez MI, Avalos J, Bauer D, Benito EP, Benoit I, Burger G, Camino LP, Cánovas D, Cerdá-Olmedo E, Cheng JF, Domínguez A, Eliáš M, Eslava AP, Glaser F, Gutiérrez G, Heitman J, Henrissat B, Iturriaga EA, Lang BF, Lavín JL, Lee SC, Li W, Lindquist E, López-García S, Luque EM, Marcos AT, Martin J, McCluskey K, Medina HR, Miralles-Durán A, Miyazaki A, Muñoz-Torres E, Oguiza JA, Ohm RA, Olmedo M, Orejas M, Ortiz-Castellanos L, Pisabarro AG, Rodríguez-Romero J, Ruiz-Herrera J, Ruiz-Vázquez R, Sanz C, Schackwitz W, Shahriari M, Shelest E, Silva-Franco F, Soanes D, Syed K, Tagua VG, Talbot NJ, Thon MR, Tice H, de Vries RP, Wiebenga A, Yadav JS, Braun EL, Baker SE, Garre V, Schmutz J, Horwitz BA, Torres-Martínez S, Idnurm A, Herrera-Estrella A, Gabaldón T, Grigoriev IV.

Curr Biol. 2016 Jun 20;26(12):1577-1584. doi: 10.1016/j.cub.2016.04.038. Epub 2016 May 26.

12.

Protein kinase C is essential for viability of the rice blast fungus Magnaporthe oryzae.

Penn TJ, Wood ME, Soanes DM, Csukai M, Corran AJ, Talbot NJ.

Mol Microbiol. 2015 Oct;98(3):403-19. doi: 10.1111/mmi.13132. Epub 2015 Aug 18.

13.

A codon-optimized green fluorescent protein for live cell imaging in Zymoseptoria tritici.

Kilaru S, Schuster M, Studholme D, Soanes D, Lin C, Talbot NJ, Steinberg G.

Fungal Genet Biol. 2015 Jun;79:125-31. doi: 10.1016/j.fgb.2015.03.022.

14.

Horizontal gene transfer in eukaryotic plant pathogens.

Soanes D, Richards TA.

Annu Rev Phytopathol. 2014;52:583-614. doi: 10.1146/annurev-phyto-102313-050127. Review.

PMID:
25090479
15.

FAR1 and FAR2 regulate the expression of genes associated with lipid metabolism in the rice blast fungus Magnaporthe oryzae.

bin Yusof MT, Kershaw MJ, Soanes DM, Talbot NJ.

PLoS One. 2014 Jun 20;9(6):e99760. doi: 10.1371/journal.pone.0099760. eCollection 2014.

16.

A SUF Fe-S cluster biogenesis system in the mitochondrion-related organelles of the anaerobic protist Pygsuia.

Stairs CW, Eme L, Brown MW, Mutsaers C, Susko E, Dellaire G, Soanes DM, van der Giezen M, Roger AJ.

Curr Biol. 2014 Jun 2;24(11):1176-86. doi: 10.1016/j.cub.2014.04.033. Epub 2014 May 22.

17.

Identifying the emerging human pathogen Scedosporium prolificans by using a species-specific monoclonal antibody that binds to the melanin biosynthetic enzyme tetrahydroxynaphthalene reductase.

Thornton CR, Ryder LS, Le Cocq K, Soanes DM.

Environ Microbiol. 2015 Apr;17(4):1023-38. doi: 10.1111/1462-2920.12470. Epub 2014 May 7.

PMID:
24684242
18.

Hook is an adapter that coordinates kinesin-3 and dynein cargo attachment on early endosomes.

Bielska E, Schuster M, Roger Y, Berepiki A, Soanes DM, Talbot NJ, Steinberg G.

J Cell Biol. 2014 Mar 17;204(6):989-1007. doi: 10.1083/jcb.201309022.

19.

The genome of Spraguea lophii and the basis of host-microsporidian interactions.

Campbell SE, Williams TA, Yousuf A, Soanes DM, Paszkiewicz KH, Williams BA.

PLoS Genet. 2013;9(8):e1003676. doi: 10.1371/journal.pgen.1003676. Epub 2013 Aug 22.

20.

Infection-associated nuclear degeneration in the rice blast fungus Magnaporthe oryzae requires non-selective macro-autophagy.

He M, Kershaw MJ, Soanes DM, Xia Y, Talbot NJ.

PLoS One. 2012;7(3):e33270. doi: 10.1371/journal.pone.0033270. Epub 2012 Mar 20.

21.

Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae.

Soanes DM, Chakrabarti A, Paszkiewicz KH, Dawe AL, Talbot NJ.

PLoS Pathog. 2012 Feb;8(2):e1002514. doi: 10.1371/journal.ppat.1002514. Epub 2012 Feb 9.

22.

Horizontal gene transfer facilitated the evolution of plant parasitic mechanisms in the oomycetes.

Richards TA, Soanes DM, Jones MD, Vasieva O, Leonard G, Paszkiewicz K, Foster PG, Hall N, Talbot NJ.

Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15258-63. doi: 10.1073/pnas.1105100108. Epub 2011 Aug 30.

23.

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.

Amselem J, Cuomo CA, van Kan JA, Viaud M, Benito EP, Couloux A, Coutinho PM, de Vries RP, Dyer PS, Fillinger S, Fournier E, Gout L, Hahn M, Kohn L, Lapalu N, Plummer KM, Pradier JM, Quévillon E, Sharon A, Simon A, ten Have A, Tudzynski B, Tudzynski P, Wincker P, Andrew M, Anthouard V, Beever RE, Beffa R, Benoit I, Bouzid O, Brault B, Chen Z, Choquer M, Collémare J, Cotton P, Danchin EG, Da Silva C, Gautier A, Giraud C, Giraud T, Gonzalez C, Grossetete S, Güldener U, Henrissat B, Howlett BJ, Kodira C, Kretschmer M, Lappartient A, Leroch M, Levis C, Mauceli E, Neuvéglise C, Oeser B, Pearson M, Poulain J, Poussereau N, Quesneville H, Rascle C, Schumacher J, Ségurens B, Sexton A, Silva E, Sirven C, Soanes DM, Talbot NJ, Templeton M, Yandava C, Yarden O, Zeng Q, Rollins JA, Lebrun MH, Dickman M.

PLoS Genet. 2011 Aug;7(8):e1002230. doi: 10.1371/journal.pgen.1002230. Epub 2011 Aug 18.

24.

Saprotrophic competitiveness and biocontrol fitness of a genetically modified strain of the plant-growth-promoting fungus Trichoderma hamatum GD12.

Ryder LS, Harris BD, Soanes DM, Kershaw MJ, Talbot NJ, Thornton CR.

Microbiology. 2012 Jan;158(Pt 1):84-97. doi: 10.1099/mic.0.051854-0. Epub 2011 Aug 11.

PMID:
21835878
25.

Resolving the question of trypanosome monophyly: a comparative genomics approach using whole genome data sets with low taxon sampling.

Leonard G, Soanes DM, Stevens JR.

Infect Genet Evol. 2011 Jul;11(5):955-9. doi: 10.1016/j.meegid.2011.03.005. Epub 2011 Mar 17.

PMID:
21419879
26.

Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism.

Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren van Themaat E, Brown JK, Butcher SA, Gurr SJ, Lebrun MH, Ridout CJ, Schulze-Lefert P, Talbot NJ, Ahmadinejad N, Ametz C, Barton GR, Benjdia M, Bidzinski P, Bindschedler LV, Both M, Brewer MT, Cadle-Davidson L, Cadle-Davidson MM, Collemare J, Cramer R, Frenkel O, Godfrey D, Harriman J, Hoede C, King BC, Klages S, Kleemann J, Knoll D, Koti PS, Kreplak J, López-Ruiz FJ, Lu X, Maekawa T, Mahanil S, Micali C, Milgroom MG, Montana G, Noir S, O'Connell RJ, Oberhaensli S, Parlange F, Pedersen C, Quesneville H, Reinhardt R, Rott M, Sacristán S, Schmidt SM, Schön M, Skamnioti P, Sommer H, Stephens A, Takahara H, Thordal-Christensen H, Vigouroux M, Wessling R, Wicker T, Panstruga R.

Science. 2010 Dec 10;330(6010):1543-6. doi: 10.1126/science.1194573.

27.
28.

Characterization of MoLDB1 required for vegetative growth, infection-related morphogenesis, and pathogenicity in the rice blast fungus Magnaporthe oryzae.

Li Y, Liang S, Yan X, Wang H, Li D, Soanes DM, Talbot NJ, Wang Z, Wang Z.

Mol Plant Microbe Interact. 2010 Oct;23(10):1260-74. doi: 10.1094/MPMI-03-10-0052.

29.

Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi.

Richards TA, Soanes DM, Foster PG, Leonard G, Thornton CR, Talbot NJ.

Plant Cell. 2009 Jul;21(7):1897-911. doi: 10.1105/tpc.109.065805. Epub 2009 Jul 7.

30.

Comparative genomics of MAP kinase and calcium-calcineurin signalling components in plant and human pathogenic fungi.

Rispail N, Soanes DM, Ant C, Czajkowski R, Grünler A, Huguet R, Perez-Nadales E, Poli A, Sartorel E, Valiante V, Yang M, Beffa R, Brakhage AA, Gow NA, Kahmann R, Lebrun MH, Lenasi H, Perez-Martin J, Talbot NJ, Wendland J, Di Pietro A.

Fungal Genet Biol. 2009 Apr;46(4):287-98. doi: 10.1016/j.fgb.2009.01.002. Epub 2009 Feb 7. Review.

31.

Moving targets: rapid evolution of oomycete effectors.

Soanes DM, Talbot NJ.

Trends Microbiol. 2008 Nov;16(11):507-10. doi: 10.1016/j.tim.2008.08.002. Epub 2008 Sep 25.

PMID:
18819803
32.

A relational database for the discovery of genes encoding amino acid biosynthetic enzymes in pathogenic fungi.

Giles PF, Soanes DM, Talbot NJ.

Comp Funct Genomics. 2003;4(1):4-15. doi: 10.1002/cfg.236.

33.

Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis.

Soanes DM, Alam I, Cornell M, Wong HM, Hedeler C, Paton NW, Rattray M, Hubbard SJ, Oliver SG, Talbot NJ.

PLoS One. 2008 Jun 4;3(6):e2300. doi: 10.1371/journal.pone.0002300.

34.

e-Fungi: a data resource for comparative analysis of fungal genomes.

Hedeler C, Wong HM, Cornell MJ, Alam I, Soanes DM, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG, Paton NW.

BMC Genomics. 2007 Nov 20;8:426.

35.

Insights from sequencing fungal and oomycete genomes: what can we learn about plant disease and the evolution of pathogenicity?

Soanes DM, Richards TA, Talbot NJ.

Plant Cell. 2007 Nov;19(11):3318-26. Epub 2007 Nov 16. No abstract available.

36.

Comparative genome analysis across a kingdom of eukaryotic organisms: specialization and diversification in the fungi.

Cornell MJ, Alam I, Soanes DM, Wong HM, Hedeler C, Paton NW, Rattray M, Hubbard SJ, Talbot NJ, Oliver SG.

Genome Res. 2007 Dec;17(12):1809-22. Epub 2007 Nov 5.

38.
39.

Comparative genomic analysis of phytopathogenic fungi using expressed sequence tag (EST) collections.

Soanes DM, Talbot NJ.

Mol Plant Pathol. 2006 Jan 1;7(1):61-70. doi: 10.1111/j.1364-3703.2005.00317.x.

PMID:
20507428
40.

A bioinformatic tool for analysis of EST transcript abundance during infection-related development by Magnaporthe grisea.

Soanes DM, Talbot NJ.

Mol Plant Pathol. 2005 Sep 1;6(5):503-12. doi: 10.1111/j.1364-3703.2005.00298.x.

PMID:
20565675
41.

The genome sequence of the rice blast fungus Magnaporthe grisea.

Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YH, Carbone I, Brown D, Oh YY, Donofrio N, Jeong JS, Soanes DM, Djonovic S, Kolomiets E, Rehmeyer C, Li W, Harding M, Kim S, Lebrun MH, Bohnert H, Coughlan S, Butler J, Calvo S, Ma LJ, Nicol R, Purcell S, Nusbaum C, Galagan JE, Birren BW.

Nature. 2005 Apr 21;434(7036):980-6.

PMID:
15846337
42.

The molecular biology of appressorium turgor generation by the rice blast fungus Magnaporthe grisea.

Wang ZY, Jenkinson JM, Holcombe LJ, Soanes DM, Veneault-Fourrey C, Bhambra GK, Talbot NJ.

Biochem Soc Trans. 2005 Apr;33(Pt 2):384-8. Review.

PMID:
15787612
43.

Regulation of the MPG1 hydrophobin gene in the rice blast fungus Magnaporthe grisea.

Soanes DM, Kershaw MJ, Cooley RN, Talbot NJ.

Mol Plant Microbe Interact. 2002 Dec;15(12):1253-67.

44.

Genomics of phytopathogenic fungi and the development of bioinformatic resources.

Soanes DM, Skinner W, Keon J, Hargreaves J, Talbot NJ.

Mol Plant Microbe Interact. 2002 May;15(5):421-7. Review.

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