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Studying nucleic envelope and plasma membrane mechanics of eukaryotic cells using confocal reflectance interferometric microscopy.

Singh VR, Yang YA, Yu H, Kamm RD, Yaqoob Z, So PTC.

Nat Commun. 2019 Aug 13;10(1):3652. doi: 10.1038/s41467-019-11645-4.


Self-assembling amyloid-like peptides as exogenous second harmonic probes for bioimaging applications.

Ni M, Zhuo S, Iliescu C, So PTC, Mehta JS, Yu H, Hauser CAE.

J Biophotonics. 2019 Jun 4:e201900065. doi: 10.1002/jbio.201900065. [Epub ahead of print]


Reflection phase microscopy using spatio-temporal coherence of light.

Choi Y, Hosseini P, Kang JW, Kang S, Yang TD, Hyeon MG, Kim BM, So PTC, Yaqoob Z.

Optica. 2018 Nov;5(11):1468-1473. doi: 10.1364/OPTICA.5.001468. Epub 2018 Nov 15.


Single-Shot Optical Anisotropy Imaging with Quantitative Polarization Interference Microscopy.

Ge B, Zhou R, Takiguchi Y, Yaqoob Z, So PTC.

Laser Photon Rev. 2018 Aug;12(8). pii: 1800070. doi: 10.1002/lpor.201800070. Epub 2018 Jun 10.


Functional imaging of visual cortical layers and subplate in awake mice with optimized three-photon microscopy.

Yildirim M, Sugihara H, So PTC, Sur M.

Nat Commun. 2019 Jan 11;10(1):177. doi: 10.1038/s41467-018-08179-6.


Correction to: Evaluation of accuracy dependence of Raman spectroscopic models on the ratio of calibration and validation points for non-invasive glucose sensing.

Singh SP, Mukherjee S, Galindo LH, So PTC, Dasari RR, Khan UZ, Kannan R, Upendran A, Kang JW.

Anal Bioanal Chem. 2019 Feb;411(6):1297. doi: 10.1007/s00216-018-1542-4.


Low-coherent optical diffraction tomography by angle-scanning illumination.

Lee K, Shin S, Yaqoob Z, So PTC, Park Y.

J Biophotonics. 2019 May;12(5):e201800289. doi: 10.1002/jbio.201800289. Epub 2019 Jan 28.


Reference-free polarization-sensitive quantitative phase imaging using single-point optical phase conjugation.

Shin S, Lee K, Yaqoob Z, So PTC, Park Y.

Opt Express. 2018 Oct 15;26(21):26858-26865. doi: 10.1364/OE.26.026858.


Scattering reduction by structured light illumination in line-scanning temporal focusing microscopy.

Xue Y, Berry KP, Boivin JR, Wadduwage D, Nedivi E, So PTC.

Biomed Opt Express. 2018 Oct 22;9(11):5654-5666. doi: 10.1364/BOE.9.005654. eCollection 2018 Nov 1.


Deep learning enables automated scoring of liver fibrosis stages.

Yu Y, Wang J, Ng CW, Ma Y, Mo S, Fong ELS, Xing J, Song Z, Xie Y, Si K, Wee A, Welsch RE, So PTC, Yu H.

Sci Rep. 2018 Oct 30;8(1):16016. doi: 10.1038/s41598-018-34300-2.


Absorption by water increases fluorescence image contrast of biological tissue in the shortwave infrared.

Carr JA, Aellen M, Franke D, So PTC, Bruns OT, Bawendi MG.

Proc Natl Acad Sci U S A. 2018 Sep 11;115(37):9080-9085. doi: 10.1073/pnas.1803210115. Epub 2018 Aug 27.


Quantitative phase microscopy of red blood cells during planar trapping and propulsion.

Ahmad A, Dubey V, Singh VR, Tinguely JC, Øie CI, Wolfson DL, Mehta DS, So PTC, Ahluwalia BS.

Lab Chip. 2018 Sep 26;18(19):3025-3036. doi: 10.1039/c8lc00356d.


Three-dimensional super-resolution high-throughput imaging by structured illumination STED microscopy.

Xue Y, So PTC.

Opt Express. 2018 Aug 6;26(16):20920-20928. doi: 10.1364/OE.26.020920.


Automated fluorescence intensity and gradient analysis enables detection of rare fluorescent mutant cells deep within the tissue of RaDR mice.

Wadduwage DN, Kay J, Singh VR, Kiraly O, Sukup-Jackson MR, Rajapakse J, Engelward BP, So PTC.

Sci Rep. 2018 Aug 14;8(1):12108. doi: 10.1038/s41598-018-30557-9.


In vivo detection of drug-induced apoptosis in tumors using Raman spectroscopy.

Jonas O, Kang JW, Singh SP, Lammers A, Nguyen FT, Dasari RR, So PTC, Langer R, Cima MJ.

Analyst. 2018 Oct 8;143(20):4836-4839. doi: 10.1039/c8an00913a.


Evaluation of accuracy dependence of Raman spectroscopic models on the ratio of calibration and validation points for non-invasive glucose sensing.

Singh SP, Mukherjee S, Galindo LH, So PTC, Dasari RR, Khan UZ, Kannan R, Upendran A, Kang JW.

Anal Bioanal Chem. 2018 Oct;410(25):6469-6475. doi: 10.1007/s00216-018-1244-y. Epub 2018 Jul 25. Erratum in: Anal Bioanal Chem. 2019 Feb;411(6):1297.


Eleven quick tips for running an interdisciplinary short course for new graduate students.

Saunders TE, He CY, Koehl P, Ong LLS, So PTC.

PLoS Comput Biol. 2018 Mar 29;14(3):e1006039. doi: 10.1371/journal.pcbi.1006039. eCollection 2018 Mar.


Regeneration mechanism for skin and peripheral nerves clarified at the organ and molecular scales.

Yannas IV, Tzeranis DS, So PTC.

Curr Opin Biomed Eng. 2018 Jun;6:1-7. doi: 10.1016/j.cobme.2017.12.002.


Near-common-path interferometer for imaging Fourier-transform spectroscopy in wide-field microscopy.

Wadduwage DN, Singh VR, Choi H, Yaqoob Z, Heemskerk H, Matsudaira P, So PTC.

Optica. 2017 May 20;4(5):546-556. doi: 10.1364/OPTICA.4.000546.


Enhanced Axial Resolution of Wide-Field Two-Photon Excitation Microscopy by Line Scanning Using a Digital Micromirror Device.

Park JK, Rowlands CJ, So PTC.

Micromachines (Basel). 2017;8(3). pii: 85. doi: 10.3390/mi8030085. Epub 2017 Mar 9.


Tomographic phase microscopy: principles and applications in bioimaging [Invited].

Jin D, Zhou R, Yaqoob Z, So PTC.

J Opt Soc Am B. 2017;34(5):B64-B77.


Dynamic spatial filtering using a digital micromirror device for high-speed optical diffraction tomography.

Jin D, Zhou R, Yaqoob Z, So PTC.

Opt Express. 2018 Jan 8;26(1):428-437. doi: 10.1364/OE.26.000428.


Three-dimensional wide-field pump-probe structured illumination microscopy: erratum.

Kim YH, So PTC.

Opt Express. 2017 Dec 11;25(25):31423-31430. doi: 10.1364/OE.25.031423.


Wide-field three-photon excitation in biological samples.

Rowlands CJ, Park D, Bruns OT, Piatkevich KD, Fukumura D, Jain RK, Bawendi MG, Boyden ES, So PT.

Light Sci Appl. 2017 May 5;6:e16255. doi: 10.1038/lsa.2016.255.


Next-generation in vivo optical imaging with short-wave infrared quantum dots.

Bruns OT, Bischof TS, Harris DK, Franke D, Shi Y, Riedemann L, Bartelt A, Jaworski FB, Carr JA, Rowlands CJ, Wilson MWB, Chen O, Wei H, Hwang GW, Montana DM, Coropceanu I, Achorn OB, Kloepper J, Heeren J, So PTC, Fukumura D, Jensen KF, Jain RK, Bawendi MG.

Nat Biomed Eng. 2017;1. pii: 0056. doi: 10.1038/s41551-017-0056. Epub 2017 Apr 10.


Single-shot dual-wavelength interferometric microscopy.

Hosseini P, Jin D, Yaqoob Z, So PTC.

Methods. 2018 Mar 1;136:35-39. doi: 10.1016/j.ymeth.2017.10.006. Epub 2017 Oct 25.


Label-free characterization of ultra violet-radiation-induced changes in skin fibroblasts with Raman spectroscopy and quantitative phase microscopy.

Singh SP, Kang S, Kang JW, So PTC, Dasari RR, Yaqoob Z, Barman I.

Sci Rep. 2017 Sep 7;7(1):10829. doi: 10.1038/s41598-017-11091-6.


Development of a classification model for non-alcoholic steatohepatitis (NASH) using confocal Raman micro-spectroscopy.

Yan J, Yu Y, Kang JW, Tam ZY, Xu S, Fong ELS, Singh SP, Song Z, Tucker-Kellogg L, So PTC, Yu H.

J Biophotonics. 2017 Dec;10(12):1703-1713. doi: 10.1002/jbio.201600303. Epub 2017 Jun 21.


Large population cell characterization using quantitative phase cytometer.

Jin D, Sung Y, Lue N, Kim YH, So PTC, Yaqoob Z.

Cytometry A. 2017 May;91(5):450-459. doi: 10.1002/cyto.a.23106. Epub 2017 Apr 26.


Three-dimensional wide-field pump-probe structured illumination microscopy.

Kim YH, So PT.

Opt Express. 2017 Apr 3;25(7):7369-7391. doi: 10.1364/OE.25.007369. Erratum in: Opt Express. 2017 Dec 11;25(25):31423-31430.


Regeneration of injured skin and peripheral nerves requires control of wound contraction, not scar formation.

Yannas IV, Tzeranis DS, So PTC.

Wound Repair Regen. 2017 Apr;25(2):177-191. doi: 10.1111/wrr.12516. Epub 2017 Apr 27. Review.


Digital micromirror device-based common-path quantitative phase imaging.

Zheng C, Zhou R, Kuang C, Zhao G, Yaqoob Z, So PT.

Opt Lett. 2017 Apr 1;42(7):1448-1451. doi: 10.1364/OL.42.001448.


Quantification of labile heme in live malaria parasites using a genetically encoded biosensor.

Abshire JR, Rowlands CJ, Ganesan SM, So PT, Niles JC.

Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):E2068-E2076. doi: 10.1073/pnas.1615195114. Epub 2017 Feb 27.


Superpixel-based segmentation of muscle fibers in multi-channel microscopy.

Nguyen BP, Heemskerk H, So PT, Tucker-Kellogg L.

BMC Syst Biol. 2016 Dec 5;10(Suppl 5):124. doi: 10.1186/s12918-016-0372-2.


Modeling the depth-sectioning effect in reflection-mode dynamic speckle-field interferometric microscopy.

Zhou R, Jin D, Hosseini P, Singh VR, Kim YH, Kuang C, Dasari RR, Yaqoob Z, So PT.

Opt Express. 2017 Jan 9;25(1):130-143. doi: 10.1364/OE.25.000130.


Investigating Effects of Proteasome Inhibitor on Multiple Myeloma Cells Using Confocal Raman Microscopy.

Kang JW, Singh SP, Nguyen FT, Lue N, Sung Y, So PT, Dasari RR.

Sensors (Basel). 2016 Dec 14;16(12). pii: E2133.


Cellular normoxic biophysical markers of hydroxyurea treatment in sickle cell disease.

Hosseini P, Abidi SZ, Du E, Papageorgiou DP, Choi Y, Park Y, Higgins JM, Kato GJ, Suresh S, Dao M, Yaqoob Z, So PT.

Proc Natl Acad Sci U S A. 2016 Aug 23;113(34):9527-32. doi: 10.1073/pnas.1610435113. Epub 2016 Aug 10.


Microfluidic device for the formation of optically excitable, three-dimensional, compartmentalized motor units.

Uzel SG, Platt RJ, Subramanian V, Pearl TM, Rowlands CJ, Chan V, Boyer LA, So PT, Kamm RD.

Sci Adv. 2016 Aug 3;2(8):e1501429. doi: 10.1126/sciadv.1501429. eCollection 2016 Aug.


Raman Spectroscopy Differentiates Each Tissue from the Skin to the Spinal Cord: A Novel Method for Epidural Needle Placement?

Anderson TA, Kang JW, Gubin T, Dasari RR, So PT.

Anesthesiology. 2016 Oct;125(4):793-804. doi: 10.1097/ALN.0000000000001249.


Virtual k-Space Modulation Optical Microscopy.

Kuang C, Ma Y, Zhou R, Zheng G, Fang Y, Xu Y, Liu X, So PT.

Phys Rev Lett. 2016 Jul 8;117(2):028102. doi: 10.1103/PhysRevLett.117.028102. Epub 2016 Jul 6.


Moxifloxacin: Clinically compatible contrast agent for multiphoton imaging.

Wang T, Jang WH, Lee S, Yoon CJ, Lee JH, Kim B, Hwang S, Hong CP, Yoon Y, Lee G, Le VH, Bok S, Ahn GO, Lee J, Gho YS, Chung E, Kim S, Jang MH, Myung SJ, Kim MJ, So PT, Kim KH.

Sci Rep. 2016 Jun 10;6:27142. doi: 10.1038/srep27142.


Fluorescent probes for nanoscopy: four categories and multiple possibilities.

Ni M, Zhuo S, So PT, Yu H.

J Biophotonics. 2017 Jan;10(1):11-23. doi: 10.1002/jbio.201600042. Epub 2016 May 25. Review.


Pushing phase and amplitude sensitivity limits in interferometric microscopy.

Hosseini P, Zhou R, Kim YH, Peres C, Diaspro A, Kuang C, Yaqoob Z, So PT.

Opt Lett. 2016 Apr 1;41(7):1656-9. doi: 10.1364/OL.41.001656.


Inhibitory Synapses Are Repeatedly Assembled and Removed at Persistent Sites In Vivo.

Villa KL, Berry KP, Subramanian J, Cha JW, Chan Oh W, Kwon HB, Kubota Y, So PT, Nedivi E.

Neuron. 2016 May 4;90(3):662-664. doi: 10.1016/j.neuron.2016.03.035. No abstract available.


Inhibitory Synapses Are Repeatedly Assembled and Removed at Persistent Sites In Vivo.

Villa KL, Berry KP, Subramanian J, Cha JW, Oh WC, Kwon HB, Kubota Y, So PT, Nedivi E.

Neuron. 2016 Feb 17;89(4):756-69. doi: 10.1016/j.neuron.2016.01.010. Epub 2016 Feb 4. Erratum in: Neuron. 2016 May 4;90(3):662-664.


Surface biology of collagen scaffold explains blocking of wound contraction and regeneration of skin and peripheral nerves.

Yannas IV, Tzeranis D, So PT.

Biomed Mater. 2015 Dec 23;11(1):014106. doi: 10.1088/1748-6041/11/1/014106. Review.


Simultaneous or Sequential Orthogonal Gradient Formation in a 3D Cell Culture Microfluidic Platform.

Uzel SG, Amadi OC, Pearl TM, Lee RT, So PT, Kamm RD.

Small. 2016 Feb 3;12(5):612-22. doi: 10.1002/smll.201501905. Epub 2015 Nov 30.


Digital micromirror device-based laser-illumination Fourier ptychographic microscopy.

Kuang C, Ma Y, Zhou R, Lee J, Barbastathis G, Dasari RR, Yaqoob Z, So PT.

Opt Express. 2015 Oct 19;23(21):26999-7010. doi: 10.1364/OE.23.026999.


In Situ Quantification of Surface Chemistry in Porous Collagen Biomaterials.

Tzeranis DS, Soller EC, Buydash MC, So PT, Yannas IV.

Ann Biomed Eng. 2016 Mar;44(3):803-15. doi: 10.1007/s10439-015-1445-x. Epub 2015 Sep 14.


Quantification of liver fibrosis via second harmonic imaging of the Glisson's capsule from liver surface.

Xu S, Kang CH, Gou X, Peng Q, Yan J, Zhuo S, Cheng CL, He Y, Kang Y, Xia W, So PT, Welsch R, Rajapakse JC, Yu H.

J Biophotonics. 2016 Apr;9(4):351-63. doi: 10.1002/jbio.201500001. Epub 2015 Jul 1.

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