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Items: 19

1.

Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild.

Pascoal S, Risse JE, Zhang X, Blaxter M, Cezard T, Challis RJ, Gharbi K, Hunt J, Kumar S, Langan E, Liu X, Rayner JG, Ritchie MG, Snoek BL, Trivedi U, Bailey NW.

Evol Lett. 2019 Dec 19;4(1):19-33. doi: 10.1002/evl3.148. eCollection 2020 Feb.

2.

WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans.

Snoek BL, Sterken MG, Hartanto M, van Zuilichem AJ, Kammenga JE, de Ridder D, Nijveen H.

Database (Oxford). 2020 Jan 1;2020. pii: baz149. doi: 10.1093/database/baz149.

3.

Transcriptome resilience predicts thermotolerance in Caenorhabditis elegans.

Jovic K, Grilli J, Sterken MG, Snoek BL, Riksen JAG, Allesina S, Kammenga JE.

BMC Biol. 2019 Dec 10;17(1):102. doi: 10.1186/s12915-019-0725-6.

4.

HISTONE DEACETYLASE 9 stimulates auxin-dependent thermomorphogenesis in Arabidopsis thaliana by mediating H2A.Z depletion.

van der Woude LC, Perrella G, Snoek BL, van Hoogdalem M, Novák O, van Verk MC, van Kooten HN, Zorn LE, Tonckens R, Dongus JA, Praat M, Stouten EA, Proveniers MCG, Vellutini E, Patitaki E, Shapulatov U, Kohlen W, Balasubramanian S, Ljung K, van der Krol AR, Smeekens S, Kaiserli E, van Zanten M.

Proc Natl Acad Sci U S A. 2019 Dec 10;116(50):25343-25354. doi: 10.1073/pnas.1911694116. Epub 2019 Nov 25.

PMID:
31767749
5.

Genetic background modifies phenotypic and transcriptional responses in a C. elegans model of α-synuclein toxicity.

Wang YA, Snoek BL, Sterken MG, Riksen JAG, Stastna JJ, Kammenga JE, Harvey SC.

BMC Genomics. 2019 Mar 20;20(1):232. doi: 10.1186/s12864-019-5597-1.

6.

A multi-parent recombinant inbred line population of C. elegans allows identification of novel QTLs for complex life history traits.

Snoek BL, Volkers RJM, Nijveen H, Petersen C, Dirksen P, Sterken MG, Nakad R, Riksen JAG, Rosenstiel P, Stastna JJ, Braeckman BP, Harvey SC, Schulenburg H, Kammenga JE.

BMC Biol. 2019 Mar 12;17(1):24. doi: 10.1186/s12915-019-0642-8.

7.

The interaction between genotype and maternal nutritional environments affects tomato seed and seedling quality.

Geshnizjani N, Sarikhani Khorami S, Willems LAJ, Snoek BL, Hilhorst HWM, Ligterink W.

J Exp Bot. 2019 May 9;70(10):2905-2918. doi: 10.1093/jxb/erz101.

PMID:
30828721
8.

Competition and predation as possible causes of bacterial rarity.

Kurm V, van der Putten WH, Weidner S, Geisen S, Snoek BL, Bakx T, Hol WHG.

Environ Microbiol. 2019 Apr;21(4):1356-1368. doi: 10.1111/1462-2920.14569. Epub 2019 Mar 18.

9.

Abundantly Present miRNAs in Milk-Derived Extracellular Vesicles Are Conserved Between Mammals.

van Herwijnen MJC, Driedonks TAP, Snoek BL, Kroon AMT, Kleinjan M, Jorritsma R, Pieterse CMJ, Hoen ENMN, Wauben MHM.

Front Nutr. 2018 Sep 18;5:81. doi: 10.3389/fnut.2018.00081. eCollection 2018.

10.

Natural genetic variation in C. elegans identified genomic loci controlling metabolite levels.

Gao AW, Sterken MG, Uit de Bos J, van Creij J, Kamble R, Snoek BL, Kammenga JE, Houtkooper RH.

Genome Res. 2018 Sep;28(9):1296-1308. doi: 10.1101/gr.232322.117. Epub 2018 Aug 14.

11.

Network Analyses Can Advance Above-Belowground Ecology.

Ramirez KS, Geisen S, Morriën E, Snoek BL, van der Putten WH.

Trends Plant Sci. 2018 Sep;23(9):759-768. doi: 10.1016/j.tplants.2018.06.009. Epub 2018 Jul 30. Review.

PMID:
30072227
12.

The Arabidopsis bZIP transcription factor family-an update.

Dröge-Laser W, Snoek BL, Snel B, Weiste C.

Curr Opin Plant Biol. 2018 Oct;45(Pt A):36-49. doi: 10.1016/j.pbi.2018.05.001. Epub 2018 Jun 1. Review.

PMID:
29860175
13.

Drought Legacy Effects on the Composition of Soil Fungal and Prokaryote Communities.

Meisner A, Jacquiod S, Snoek BL, Ten Hooven FC, van der Putten WH.

Front Microbiol. 2018 Mar 7;9:294. doi: 10.3389/fmicb.2018.00294. eCollection 2018.

14.

Ras/MAPK Modifier Loci Revealed by eQTL in Caenorhabditis elegans.

Sterken MG, van Bemmelen van der Plaat L, Riksen JAG, Rodriguez M, Schmid T, Hajnal A, Kammenga JE, Snoek BL.

G3 (Bethesda). 2017 Sep 7;7(9):3185-3193. doi: 10.1534/g3.117.1120.

15.

Contribution of trans regulatory eQTL to cryptic genetic variation in C. elegans.

Snoek BL, Sterken MG, Bevers RPJ, Volkers RJM, Van't Hof A, Brenchley R, Riksen JAG, Cossins A, Kammenga JE.

BMC Genomics. 2017 Jun 29;18(1):500. doi: 10.1186/s12864-017-3899-8.

16.

Genetic Dissection of Morphometric Traits Reveals That Phytochrome B Affects Nucleus Size and Heterochromatin Organization in Arabidopsis thaliana.

Snoek BL, Pavlova P, Tessadori F, Peeters AJM, Bourbousse C, Barneche F, de Jong H, Fransz PF, van Zanten M.

G3 (Bethesda). 2017 Aug 7;7(8):2519-2531. doi: 10.1534/g3.117.043539.

17.

reGenotyper: Detecting mislabeled samples in genetic data.

Zych K, Snoek BL, Elvin M, Rodriguez M, Van der Velde KJ, Arends D, Westra HJ, Swertz MA, Poulin G, Kammenga JE, Breitling R, Jansen RC, Li Y.

PLoS One. 2017 Feb 13;12(2):e0171324. doi: 10.1371/journal.pone.0171324. eCollection 2017.

18.

AraQTL - workbench and archive for systems genetics in Arabidopsis thaliana.

Nijveen H, Ligterink W, Keurentjes JJ, Loudet O, Long J, Sterken MG, Prins P, Hilhorst HW, de Ridder D, Kammenga JE, Snoek BL.

Plant J. 2017 Mar;89(6):1225-1235. doi: 10.1111/tpj.13457. Epub 2017 Feb 13.

19.

Quantifying global soil carbon losses in response to warming.

Crowther TW, Todd-Brown KE, Rowe CW, Wieder WR, Carey JC, Machmuller MB, Snoek BL, Fang S, Zhou G, Allison SD, Blair JM, Bridgham SD, Burton AJ, Carrillo Y, Reich PB, Clark JS, Classen AT, Dijkstra FA, Elberling B, Emmett BA, Estiarte M, Frey SD, Guo J, Harte J, Jiang L, Johnson BR, Kröel-Dulay G, Larsen KS, Laudon H, Lavallee JM, Luo Y, Lupascu M, Ma LN, Marhan S, Michelsen A, Mohan J, Niu S, Pendall E, Peñuelas J, Pfeifer-Meister L, Poll C, Reinsch S, Reynolds LL, Schmidt IK, Sistla S, Sokol NW, Templer PH, Treseder KK, Welker JM, Bradford MA.

Nature. 2016 Nov 30;540(7631):104-108. doi: 10.1038/nature20150.

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