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Items: 1 to 50 of 92

1.

Bacterial encapsulins as orthogonal compartments for mammalian cell engineering.

Sigmund F, Massner C, Erdmann P, Stelzl A, Rolbieski H, Desai M, Bricault S, Wörner TP, Snijder J, Geerlof A, Fuchs H, Hrabĕ de Angelis M, Heck AJR, Jasanoff A, Ntziachristos V, Plitzko J, Westmeyer GG.

Nat Commun. 2018 May 18;9(1):1990. doi: 10.1038/s41467-018-04227-3.

2.

An Antibody Targeting the Fusion Machinery Neutralizes Dual-Tropic Infection and Defines a Site of Vulnerability on Epstein-Barr Virus.

Snijder J, Ortego MS, Weidle C, Stuart AB, Gray MD, McElrath MJ, Pancera M, Veesler D, McGuire AT.

Immunity. 2018 Apr 17;48(4):799-811.e9. doi: 10.1016/j.immuni.2018.03.026.

PMID:
29669253
3.

Stochastic palmitoylation of accessible cysteines in membrane proteins revealed by native mass spectrometry.

Rodenburg RNP, Snijder J, van de Waterbeemd M, Schouten A, Granneman J, Heck AJR, Gros P.

Nat Commun. 2017 Nov 3;8(1):1280. doi: 10.1038/s41467-017-01461-z.

4.

Glycan shield and fusion activation of a deltacoronavirus spike glycoprotein fine-tuned for enteric infections.

Xiong X, Tortorici MA, Snijder J, Yoshioka C, Walls AC, Li W, McGuire AT, Rey FA, Bosch BJ, Veesler D.

J Virol. 2017 Nov 1. pii: JVI.01628-17. doi: 10.1128/JVI.01628-17. [Epub ahead of print]

5.

Tectonic conformational changes of a coronavirus spike glycoprotein promote membrane fusion.

Walls AC, Tortorici MA, Snijder J, Xiong X, Bosch BJ, Rey FA, Veesler D.

Proc Natl Acad Sci U S A. 2017 Oct 17;114(42):11157-11162. doi: 10.1073/pnas.1708727114. Epub 2017 Oct 3.

6.

Vertex-Specific Proteins pUL17 and pUL25 Mechanically Reinforce Herpes Simplex Virus Capsids.

Snijder J, Radtke K, Anderson F, Scholtes L, Corradini E, Baines J, Heck AJR, Wuite GJL, Sodeik B, Roos WH.

J Virol. 2017 May 26;91(12). pii: e00123-17. doi: 10.1128/JVI.00123-17. Print 2017 Jun 15.

7.

Structural Analysis of a Temperature-Induced Transition in a Viral Capsid Probed by HDX-MS.

van de Waterbeemd M, Llauró A, Snijder J, Valbuena A, Rodríguez-Huete A, Fuertes MA, de Pablo PJ, Mateu MG, Heck AJR.

Biophys J. 2017 Mar 28;112(6):1157-1165. doi: 10.1016/j.bpj.2017.02.003.

8.

Structures of the cyanobacterial circadian oscillator frozen in a fully assembled state.

Snijder J, Schuller JM, Wiegard A, Lössl P, Schmelling N, Axmann IM, Plitzko JM, Förster F, Heck AJ.

Science. 2017 Mar 17;355(6330):1181-1184. doi: 10.1126/science.aag3218. Epub 2017 Mar 16.

PMID:
28302852
9.

Vitrification after multiple rounds of sample application and blotting improves particle density on cryo-electron microscopy grids.

Snijder J, Borst AJ, Dosey A, Walls AC, Burrell A, Reddy VS, Kollman JM, Veesler D.

J Struct Biol. 2017 Apr;198(1):38-42. doi: 10.1016/j.jsb.2017.02.008. Epub 2017 Feb 22.

10.

Structural basis of myelin-associated glycoprotein adhesion and signalling.

Pronker MF, Lemstra S, Snijder J, Heck AJ, Thies-Weesie DM, Pasterkamp RJ, Janssen BJ.

Nat Commun. 2016 Dec 6;7:13584. doi: 10.1038/ncomms13584.

11.

Glycan shield and epitope masking of a coronavirus spike protein observed by cryo-electron microscopy.

Walls AC, Tortorici MA, Frenz B, Snijder J, Li W, Rey FA, DiMaio F, Bosch BJ, Veesler D.

Nat Struct Mol Biol. 2016 Oct;23(10):899-905. doi: 10.1038/nsmb.3293. Epub 2016 Sep 12.

12.

Assembly and Mechanical Properties of the Cargo-Free and Cargo-Loaded Bacterial Nanocompartment Encapsulin.

Snijder J, Kononova O, Barbu IM, Uetrecht C, Rurup WF, Burnley RJ, Koay MS, Cornelissen JJ, Roos WH, Barsegov V, Wuite GJ, Heck AJ.

Biomacromolecules. 2016 Aug 8;17(8):2522-9. doi: 10.1021/acs.biomac.6b00469. Epub 2016 Jul 7.

PMID:
27355101
13.

Examining the Heterogeneous Genome Content of Multipartite Viruses BMV and CCMV by Native Mass Spectrometry.

van de Waterbeemd M, Snijder J, Tsvetkova IB, Dragnea BG, Cornelissen JJ, Heck AJ.

J Am Soc Mass Spectrom. 2016 Jun;27(6):1000-9. doi: 10.1007/s13361-016-1348-6. Epub 2016 Feb 29.

14.

Fluctuating Nonlinear Spring Model of Mechanical Deformation of Biological Particles.

Kononova O, Snijder J, Kholodov Y, Marx KA, Wuite GJ, Roos WH, Barsegov V.

PLoS Comput Biol. 2016 Jan 28;12(1):e1004729. doi: 10.1371/journal.pcbi.1004729. eCollection 2016 Jan.

15.

Conformational landscape and pathway of disulfide bond reduction of human alpha defensin.

Snijder J, van de Waterbeemd M, Glover MS, Shi L, Clemmer DE, Heck AJ.

Protein Sci. 2015 Aug;24(8):1264-71. doi: 10.1002/pro.2694. Epub 2015 May 27.

16.

Analytical approaches for size and mass analysis of large protein assemblies.

Snijder J, Heck AJ.

Annu Rev Anal Chem (Palo Alto Calif). 2014;7:43-64. doi: 10.1146/annurev-anchem-071213-020015. Review.

PMID:
25014341
17.

Defining the stoichiometry and cargo load of viral and bacterial nanoparticles by Orbitrap mass spectrometry.

Snijder J, van de Waterbeemd M, Damoc E, Denisov E, Grinfeld D, Bennett A, Agbandje-McKenna M, Makarov A, Heck AJ.

J Am Chem Soc. 2014 May 21;136(20):7295-9. doi: 10.1021/ja502616y. Epub 2014 May 7.

18.

Boundaries of mass resolution in native mass spectrometry.

Lössl P, Snijder J, Heck AJ.

J Am Soc Mass Spectrom. 2014 Jun;25(6):906-17. doi: 10.1007/s13361-014-0874-3. Epub 2014 Apr 4.

PMID:
24700121
19.

The cleaved N-terminus of pVI binds peripentonal hexons in mature adenovirus.

Snijder J, Benevento M, Moyer CL, Reddy V, Nemerow GR, Heck AJ.

J Mol Biol. 2014 May 1;426(9):1971-9. doi: 10.1016/j.jmb.2014.02.022. Epub 2014 Mar 5.

20.

Adenovirus composition, proteolysis, and disassembly studied by in-depth qualitative and quantitative proteomics.

Benevento M, Di Palma S, Snijder J, Moyer CL, Reddy VS, Nemerow GR, Heck AJ.

J Biol Chem. 2014 Apr 18;289(16):11421-30. doi: 10.1074/jbc.M113.537498. Epub 2014 Mar 3.

21.

Self-sorting of foreign proteins in a bacterial nanocompartment.

Rurup WF, Snijder J, Koay MS, Heck AJ, Cornelissen JJ.

J Am Chem Soc. 2014 Mar 12;136(10):3828-32. doi: 10.1021/ja410891c. Epub 2014 Feb 27.

PMID:
24527660
22.

Insight into cyanobacterial circadian timing from structural details of the KaiB-KaiC interaction.

Snijder J, Burnley RJ, Wiegard A, Melquiond AS, Bonvin AM, Axmann IM, Heck AJ.

Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1379-84. doi: 10.1073/pnas.1314326111. Epub 2014 Jan 13.

23.

Distinguishing direct binding interactions from allosteric effects in the protease-HK97 prohead I δ domain complex by amide H/D exchange mass spectrometry.

Krishnamurthy S, Veesler D, Khayat R, Snijder J, Huang R, Heck A, Johnson J, Anand GS.

Bacteriophage. 2014 Dec 16;4(4):e959816. eCollection 2014.

24.

Architecture of a dsDNA viral capsid in complex with its maturation protease.

Veesler D, Khayat R, Krishnamurthy S, Snijder J, Huang RK, Heck AJ, Anand GS, Johnson JE.

Structure. 2014 Feb 4;22(2):230-7. doi: 10.1016/j.str.2013.11.007. Epub 2013 Dec 19.

25.

Structural transitions and energy landscape for Cowpea Chlorotic Mottle Virus capsid mechanics from nanomanipulation in vitro and in silico.

Kononova O, Snijder J, Brasch M, Cornelissen J, Dima RI, Marx KA, Wuite GJ, Roos WH, Barsegov V.

Biophys J. 2013 Oct 15;105(8):1893-903. doi: 10.1016/j.bpj.2013.08.032.

26.

Probing the biophysical interplay between a viral genome and its capsid.

Snijder J, Uetrecht C, Rose RJ, Sanchez-Eugenia R, Marti GA, Agirre J, Guérin DM, Wuite GJ, Heck AJ, Roos WH.

Nat Chem. 2013 Jun;5(6):502-9. doi: 10.1038/nchem.1627. Epub 2013 Apr 28.

PMID:
23695632
27.

Studying 18 MDa virus assemblies with native mass spectrometry.

Snijder J, Rose RJ, Veesler D, Johnson JE, Heck AJ.

Angew Chem Int Ed Engl. 2013 Apr 2;52(14):4020-3. doi: 10.1002/anie.201210197. Epub 2013 Feb 28. No abstract available. Erratum in: Angew Chem Int Ed Engl. 2014 Mar 17;53(12):3051.

28.

Integrin and defensin modulate the mechanical properties of adenovirus.

Snijder J, Reddy VS, May ER, Roos WH, Nemerow GR, Wuite GJ.

J Virol. 2013 Mar;87(5):2756-66. doi: 10.1128/JVI.02516-12. Epub 2012 Dec 26.

29.

Fluorescence biosensing micropatterned surfaces based on immobilized human acetylcholinesterase.

Bartolini M, Naldi M, Nicolau DV, van Delft FC, van Zijl J, Snijder J, van den Heuvel EF, Naburgh EP, Calonghi N, Andrisano V.

Anal Bioanal Chem. 2013 Jan;405(2-3):795-804. doi: 10.1007/s00216-012-6237-7. Epub 2012 Jul 20.

PMID:
22814970
30.

Probing the impact of loading rate on the mechanical properties of viral nanoparticles.

Snijder J, Ivanovska IL, Baclayon M, Roos WH, Wuite GJ.

Micron. 2012 Dec;43(12):1343-50. doi: 10.1016/j.micron.2012.04.011. Epub 2012 Apr 27.

PMID:
22609100
31.

Site-specific methionine oxidation in calmodulin affects structural integrity and interaction with Ca2+/calmodulin-dependent protein kinase II.

Snijder J, Rose RJ, Raijmakers R, Heck AJ.

J Struct Biol. 2011 Apr;174(1):187-95. doi: 10.1016/j.jsb.2010.12.002. Epub 2010 Dec 13.

PMID:
21156208
32.

Immune response capacity after human splenic autotransplantation: restoration of response to individual pneumococcal vaccine subtypes.

Leemans R, Manson W, Snijder JA, Smit JW, Klasen HJ, The TH, Timens W.

Ann Surg. 1999 Feb;229(2):279-85.

33.

Inexpensive 4-hour micro-agar dilution susceptibility determination method.

Holloway Y, Snijder JA, Schiphuis J.

Antimicrob Agents Chemother. 1996 Dec;40(12):2792-5.

34.

Luxuriant growth of Helicobacter pylori and Campylobacter species in candle jars after primary isolation.

Holloway Y, Schiphuis J, Weites L, Snijder JA.

Eur J Clin Microbiol Infect Dis. 1994 Oct;13(10):831-2. No abstract available.

PMID:
7889954
35.

Use of PCR with feces for detection of Helicobacter pylori infections in patients.

van Zwet AA, Thijs JC, Kooistra-Smid AM, Schirm J, Snijder JA.

J Clin Microbiol. 1994 May;32(5):1346-8.

36.

Multiply resistant pneumococci in The Netherlands.

Holloway Y, Schiphuis J, Kooistra-Smid M, Snijder JA, Appelbaum PC, Spangler SK.

Eur J Clin Microbiol Infect Dis. 1994 Apr;13(4):322-3. No abstract available.

PMID:
8070440
37.

In vitro studies on stability and development of metronidazole resistance in Helicobacter pylori.

van Zwet AA, Thijs JC, Schievink-de Vries W, Schiphuis J, Snijder JA.

Antimicrob Agents Chemother. 1994 Feb;38(2):360-2.

39.

Sensitivity of culture compared with that of polymerase chain reaction for detection of Helicobacter pylori from antral biopsy samples.

van Zwet AA, Thijs JC, Kooistra-Smid AM, Schirm J, Snijder JA.

J Clin Microbiol. 1993 Jul;31(7):1918-20.

40.

Antigen detection in oropharyngeal secretions for rapid diagnosis of pneumococcal pneumonia.

Boersma WG, Holloway Y, Kuttschrütter H, Löwenberg A, Snijder JA, Koëter GH.

Eur J Clin Microbiol Infect Dis. 1993 Mar;12(3):217-20.

PMID:
8508822
41.

Rapid detection of pneumococcal antigen in pleural fluid of patients with community acquired pneumonia.

Boersma WG, Löwenberg A, Holloway Y, Kuttschrütter H, Snijder JA, Koëter GH.

Thorax. 1993 Feb;48(2):160-2.

42.

The role of antigen detection in pneumococcal carriers: a comparison between cultures and capsular antigen detection in upper respiratory tract secretions.

Boersma WG, Löwenberg A, Holloway Y, Kuttschrütter H, Snijder JA, Koëter H.

Scand J Infect Dis. 1993;25(1):51-6.

PMID:
8460349
43.

Detection of pneumococcal capsular antigen in the presence of penicillin in vitro.

Holloway Y, Boersma WG, Kuttschrütter H, Snijder JA.

Scand J Infect Dis. 1993;25(3):317-22.

PMID:
8362227
44.

Pneumococcal antigen persistence in sputum from patients with community-acquired pneumonia.

Boersma WG, Löwenberg A, Holloway Y, Kuttschrütter H, Snijder JA, Koëter GH.

Chest. 1992 Aug;102(2):422-7. Erratum in: Chest 1993 Nov;104(5):1644.

PMID:
1643926
45.

Impact of washing sputum on Streptococcus pneumoniae and other microorganisms.

Holloway Y, Boersma WG, Kuttschrütter H, Snijder JA.

J Infect Dis. 1992 Feb;165(2):397-8. No abstract available.

PMID:
1730909
46.

Minimum number of pneumococci required for capsular antigen to be detectable by latex agglutination.

Holloway Y, Boersma WG, Kuttschrütter H, Snijder JA.

J Clin Microbiol. 1992 Feb;30(2):517-9.

47.

Pneumococcal capsular antigen detection and pneumococcal serology in patients with community acquired pneumonia.

Boersma WG, Löwenberg A, Holloway Y, Kuttschrütter H, Snijder JA, Koëter GH.

Thorax. 1991 Dec;46(12):902-6.

48.

Effect of washing sputum on detection of pneumococcal capsular antigen.

Holloway Y, Boersma WG, Kuttschrütter H, Snijder JA.

Eur J Clin Microbiol Infect Dis. 1991 Jul;10(7):567-9.

PMID:
1915399
49.

Pneumococcal antibodies measured with a rapid enzyme-linked-immunosorbent assay (ELISA), using the whole vaccine as antigen. Suggestions for clinical application.

Snijder JA, Löwenberg A, Klompmaker I, Weits J.

Neth J Med. 1988 Aug;33(1-2):52-9. No abstract available.

PMID:
3247011
50.

Penicillin concentrations in cerebrospinal fluid (CSF) during repository treatment regimen for syphilis.

van der Valk PG, Kraai EJ, van Voorst Vader PC, Haaxma-Reiche H, Snijder JA.

Genitourin Med. 1988 Aug;64(4):223-5.

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