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Items: 1 to 50 of 102

1.

The Arabidopsis bZIP transcription factor family-an update.

Dröge-Laser W, Snoek BL, Snel B, Weiste C.

Curr Opin Plant Biol. 2018 Oct;45(Pt A):36-49. doi: 10.1016/j.pbi.2018.05.001. Epub 2018 Jun 1. Review.

PMID:
29860175
2.

Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery.

Vosseberg J, Snel B.

Biol Direct. 2017 Dec 1;12(1):30. doi: 10.1186/s13062-017-0201-6. Review.

3.

Evolutionary dynamics of the kinetochore network in eukaryotes as revealed by comparative genomics.

van Hooff JJ, Tromer E, van Wijk LM, Snel B, Kops GJ.

EMBO Rep. 2017 Sep;18(9):1559-1571. doi: 10.15252/embr.201744102. Epub 2017 Jun 22.

4.
5.

Phylogenomics-guided discovery of a novel conserved cassette of short linear motifs in BubR1 essential for the spindle checkpoint.

Tromer E, Bade D, Snel B, Kops GJ.

Open Biol. 2016 Dec;6(12). pii: 160315. doi: 10.1098/rsob.160315.

6.

Extensive translational regulation during seed germination revealed by polysomal profiling.

Bai B, Peviani A, van der Horst S, Gamm M, Snel B, Bentsink L, Hanson J.

New Phytol. 2017 Apr;214(1):233-244. doi: 10.1111/nph.14355. Epub 2016 Dec 9.

7.

The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.

Santuari L, Sanchez-Perez GF, Luijten M, Rutjens B, Terpstra I, Berke L, Gorte M, Prasad K, Bao D, Timmermans-Hereijgers JL, Maeo K, Nakamura K, Shimotohno A, Pencik A, Novak O, Ljung K, van Heesch S, de Bruijn E, Cuppen E, Willemsen V, Mähönen AP, Lukowitz W, Snel B, de Ridder D, Scheres B, Heidstra R.

Plant Cell. 2016 Dec;28(12):2937-2951. doi: 10.1105/tpc.16.00656. Epub 2016 Dec 5.

8.
9.

A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions.

Sameith K, Amini S, Groot Koerkamp MJ, van Leenen D, Brok M, Brabers N, Lijnzaad P, van Hooff SR, Benschop JJ, Lenstra TL, Apweiler E, van Wageningen S, Snel B, Holstege FC, Kemmeren P.

BMC Biol. 2015 Dec 23;13:112. doi: 10.1186/s12915-015-0222-5.

10.

Widespread Recurrent Patterns of Rapid Repeat Evolution in the Kinetochore Scaffold KNL1.

Tromer E, Snel B, Kops GJ.

Genome Biol Evol. 2015 Aug 8;7(8):2383-93. doi: 10.1093/gbe/evv140.

11.

Spatial Organization in Protein Kinase A Signaling Emerged at the Base of Animal Evolution.

Peng M, Aye TT, Snel B, van Breukelen B, Scholten A, Heck AJ.

J Proteome Res. 2015 Jul 2;14(7):2976-87. doi: 10.1021/acs.jproteome.5b00370. Epub 2015 Jun 24.

PMID:
26066639
12.

Genesis of chromatin and transcription dynamics in the origin of species.

Koster MJ, Snel B, Timmers HT.

Cell. 2015 May 7;161(4):724-36. doi: 10.1016/j.cell.2015.04.033. Review.

13.
14.

Increased sucrose levels mediate selective mRNA translation in Arabidopsis.

Gamm M, Peviani A, Honsel A, Snel B, Smeekens S, Hanson J.

BMC Plant Biol. 2014 Nov 18;14:306. doi: 10.1186/s12870-014-0306-3.

15.

DOWNY MILDEW RESISTANT 6 and DMR6-LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis.

Zeilmaker T, Ludwig NR, Elberse J, Seidl MF, Berke L, Van Doorn A, Schuurink RC, Snel B, Van den Ackerveken G.

Plant J. 2015 Jan;81(2):210-22. doi: 10.1111/tpj.12719. Epub 2014 Dec 9.

16.

Evolutionary acquisition of cysteines determines FOXO paralog-specific redox signaling.

Putker M, Vos HR, van Dorenmalen K, de Ruiter H, Duran AG, Snel B, Burgering BM, Vermeulen M, Dansen TB.

Antioxid Redox Signal. 2015 Jan 1;22(1):15-28. doi: 10.1089/ars.2014.6056.

17.

Large-scale genetic perturbations reveal regulatory networks and an abundance of gene-specific repressors.

Kemmeren P, Sameith K, van de Pasch LA, Benschop JJ, Lenstra TL, Margaritis T, O'Duibhir E, Apweiler E, van Wageningen S, Ko CW, van Heesch S, Kashani MM, Ampatziadis-Michailidis G, Brok MO, Brabers NA, Miles AJ, Bouwmeester D, van Hooff SR, van Bakel H, Sluiters E, Bakker LV, Snel B, Lijnzaad P, van Leenen D, Groot Koerkamp MJ, Holstege FC.

Cell. 2014 Apr 24;157(3):740-52. doi: 10.1016/j.cell.2014.02.054.

18.

Small homologous blocks in phytophthora genomes do not point to an ancient whole-genome duplication.

van Hooff JJ, Snel B, Seidl MF.

Genome Biol Evol. 2014 May;6(5):1079-85. doi: 10.1093/gbe/evu081.

19.

Quantitative label-free phosphoproteomics of six different life stages of the late blight pathogen Phytophthora infestans reveals abundant phosphorylation of members of the CRN effector family.

Resjö S, Ali A, Meijer HJ, Seidl MF, Snel B, Sandin M, Levander F, Govers F, Andreasson E.

J Proteome Res. 2014 Apr 4;13(4):1848-59. doi: 10.1021/pr4009095. Epub 2014 Mar 17.

PMID:
24588563
20.
21.

A subfamily of putative cytokinin receptors is revealed by an analysis of the evolution of the two-component signaling system of plants.

Gruhn N, Halawa M, Snel B, Seidl MF, Heyl A.

Plant Physiol. 2014 May;165(1):227-37. doi: 10.1104/pp.113.228080. Epub 2014 Feb 11.

22.

Arrayed BUB recruitment modules in the kinetochore scaffold KNL1 promote accurate chromosome segregation.

Vleugel M, Tromer E, Omerzu M, Groenewold V, Nijenhuis W, Snel B, Kops GJ.

J Cell Biol. 2013 Dec 23;203(6):943-55.

23.

Shared protein complex subunits contribute to explaining disrupted co-occurrence.

Schneider A, Seidl MF, Snel B.

PLoS Comput Biol. 2013;9(7):e1003124. doi: 10.1371/journal.pcbi.1003124. Epub 2013 Jul 18.

24.

A predicted functional gene network for the plant pathogen Phytophthora infestans as a framework for genomic biology.

Seidl MF, Schneider A, Govers F, Snel B.

BMC Genomics. 2013 Jul 17;14:483. doi: 10.1186/1471-2164-14-483.

25.

Distinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasitica.

Jiang RH, de Bruijn I, Haas BJ, Belmonte R, Löbach L, Christie J, van den Ackerveken G, Bottin A, Bulone V, Díaz-Moreno SM, Dumas B, Fan L, Gaulin E, Govers F, Grenville-Briggs LJ, Horner NR, Levin JZ, Mammella M, Meijer HJ, Morris P, Nusbaum C, Oome S, Phillips AJ, van Rooyen D, Rzeszutek E, Saraiva M, Secombes CJ, Seidl MF, Snel B, Stassen JH, Sykes S, Tripathy S, van den Berg H, Vega-Arreguin JC, Wawra S, Young SK, Zeng Q, Dieguez-Uribeondo J, Russ C, Tyler BM, van West P.

PLoS Genet. 2013 Jun;9(6):e1003272. doi: 10.1371/journal.pgen.1003272. Epub 2013 Jun 13.

26.

A TPR domain-containing N-terminal module of MPS1 is required for its kinetochore localization by Aurora B.

Nijenhuis W, von Castelmur E, Littler D, De Marco V, Tromer E, Vleugel M, van Osch MH, Snel B, Perrakis A, Kops GJ.

J Cell Biol. 2013 Apr 15;201(2):217-31. doi: 10.1083/jcb.201210033. Epub 2013 Apr 8.

27.

Bioinformatic inference of specific and general transcription factor binding sites in the plant pathogen Phytophthora infestans.

Seidl MF, Wang RP, Van den Ackerveken G, Govers F, Snel B.

PLoS One. 2012;7(12):e51295. doi: 10.1371/journal.pone.0051295. Epub 2012 Dec 12.

28.

ABI4: versatile activator and repressor.

Wind JJ, Peviani A, Snel B, Hanson J, Smeekens SC.

Trends Plant Sci. 2013 Mar;18(3):125-32. doi: 10.1016/j.tplants.2012.10.004. Epub 2012 Nov 20.

PMID:
23182343
29.

Contribution of the epigenetic mark H3K27me3 to functional divergence after whole genome duplication in Arabidopsis.

Berke L, Sanchez-Perez GF, Snel B.

Genome Biol. 2012 Oct 3;13(10):R94. doi: 10.1186/gb-2012-13-10-r94.

30.

Evolution and function of the mitotic checkpoint.

Vleugel M, Hoogendoorn E, Snel B, Kops GJ.

Dev Cell. 2012 Aug 14;23(2):239-50. doi: 10.1016/j.devcel.2012.06.013. Review.

31.
32.

The vertebrate mitotic checkpoint protein BUBR1 is an unusual pseudokinase.

Suijkerbuijk SJ, van Dam TJ, Karagöz GE, von Castelmur E, Hubner NC, Duarte AM, Vleugel M, Perrakis A, Rüdiger SG, Snel B, Kops GJ.

Dev Cell. 2012 Jun 12;22(6):1321-9. doi: 10.1016/j.devcel.2012.03.009.

33.

The R-spondin protein family.

de Lau WB, Snel B, Clevers HC.

Genome Biol. 2012;13(3):242. doi: 10.1186/gb-2012-13-3-242. Review.

34.

Effector identification in the lettuce downy mildew Bremia lactucae by massively parallel transcriptome sequencing.

Stassen JH, Seidl MF, Vergeer PW, Nijman IJ, Snel B, Cuppen E, Van den Ackerveken G.

Mol Plant Pathol. 2012 Sep;13(7):719-31. doi: 10.1111/j.1364-3703.2011.00780.x. Epub 2012 Feb 1.

PMID:
22293108
35.

Reconstruction of oomycete genome evolution identifies differences in evolutionary trajectories leading to present-day large gene families.

Seidl MF, Van den Ackerveken G, Govers F, Snel B.

Genome Biol Evol. 2012;4(3):199-211. doi: 10.1093/gbe/evs003. Epub 2012 Jan 9.

36.

Database independent proteomics analysis of the ostrich and human proteome.

Altelaar AF, Navarro D, Boekhorst J, van Breukelen B, Snel B, Mohammed S, Heck AJ.

Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):407-12. doi: 10.1073/pnas.1108399108. Epub 2011 Dec 22.

37.

Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants.

Mithoe SC, Boersema PJ, Berke L, Snel B, Heck AJ, Menke FL.

J Proteome Res. 2012 Jan 1;11(1):438-48. doi: 10.1021/pr200893k. Epub 2011 Dec 1.

PMID:
22074104
38.

Evolution of the TOR pathway.

van Dam TJ, Zwartkruis FJ, Bos JL, Snel B.

J Mol Evol. 2011 Oct;73(3-4):209-20. doi: 10.1007/s00239-011-9469-9. Epub 2011 Nov 5.

39.

Evaluating experimental bias and completeness in comparative phosphoproteomics analysis.

Boekhorst J, Boersema PJ, Tops BB, van Breukelen B, Heck AJ, Snel B.

PLoS One. 2011;6(8):e23276. doi: 10.1371/journal.pone.0023276. Epub 2011 Aug 10.

40.

Arabidopsis PLETHORA transcription factors control phyllotaxis.

Prasad K, Grigg SP, Barkoulas M, Yadav RK, Sanchez-Perez GF, Pinon V, Blilou I, Hofhuis H, Dhonukshe P, Galinha C, Mähönen AP, Muller WH, Raman S, Verkleij AJ, Snel B, Reddy GV, Tsiantis M, Scheres B.

Curr Biol. 2011 Jul 12;21(13):1123-8. doi: 10.1016/j.cub.2011.05.009. Epub 2011 Jun 23.

41.

Evolution of the Ras-like small GTPases and their regulators.

van Dam TJ, Bos JL, Snel B.

Small GTPases. 2011 Jan;2(1):4-16.

42.

Tyrosine phosphorylation profiling in FGF-2 stimulated human embryonic stem cells.

Ding VM, Boersema PJ, Foong LY, Preisinger C, Koh G, Natarajan S, Lee DY, Boekhorst J, Snel B, Lemeer S, Heck AJ, Choo A.

PLoS One. 2011 Mar 17;6(3):e17538. doi: 10.1371/journal.pone.0017538.

43.

Functional overlap and regulatory links shape genetic interactions between signaling pathways.

van Wageningen S, Kemmeren P, Lijnzaad P, Margaritis T, Benschop JJ, de Castro IJ, van Leenen D, Groot Koerkamp MJ, Ko CW, Miles AJ, Brabers N, Brok MO, Lenstra TL, Fiedler D, Fokkens L, Aldecoa R, Apweiler E, Taliadouros V, Sameith K, van de Pasch LA, van Hooff SR, Bakker LV, Krogan NJ, Snel B, Holstege FC.

Cell. 2010 Dec 10;143(6):991-1004. doi: 10.1016/j.cell.2010.11.021.

44.

A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organization.

Seidl MF, Van den Ackerveken G, Govers F, Snel B.

Plant Physiol. 2011 Feb;155(2):628-44. doi: 10.1104/pp.110.167841. Epub 2010 Nov 30.

45.

SOMBRERO, BEARSKIN1, and BEARSKIN2 regulate root cap maturation in Arabidopsis.

Bennett T, van den Toorn A, Sanchez-Perez GF, Campilho A, Willemsen V, Snel B, Scheres B.

Plant Cell. 2010 Mar;22(3):640-54. doi: 10.1105/tpc.109.072272. Epub 2010 Mar 2.

46.

Enrichment of homologs in insignificant BLAST hits by co-complex network alignment.

Fokkens L, Botelho SM, Boekhorst J, Snel B.

BMC Bioinformatics. 2010 Feb 12;11:86. doi: 10.1186/1471-2105-11-86.

47.

In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling.

Boersema PJ, Foong LY, Ding VM, Lemeer S, van Breukelen B, Philp R, Boekhorst J, Snel B, den Hertog J, Choo AB, Heck AJ.

Mol Cell Proteomics. 2010 Jan;9(1):84-99. doi: 10.1074/mcp.M900291-MCP200. Epub 2009 Sep 21.

48.

Necrosis of nose skin after varicella zoster infection: a case report.

Snel BJ, Visconti G, Grabietz PD, Werker PM.

J Plast Reconstr Aesthet Surg. 2010 May;63(5):e445-7. doi: 10.1016/j.bjps.2009.08.006. Epub 2009 Sep 9.

PMID:
19744905
49.

Phylogeny of the CDC25 homology domain reveals rapid differentiation of Ras pathways between early animals and fungi.

van Dam TJ, Rehmann H, Bos JL, Snel B.

Cell Signal. 2009 Nov;21(11):1579-85. doi: 10.1016/j.cellsig.2009.06.004. Epub 2009 Jun 28.

PMID:
19567266
50.

Long-term morbidity of adjuvant whole abdominal radiotherapy (WART) or chemotherapy for early stage ovarian cancer.

Engelen MJ, Snel BJ, Schaapveld M, Pras E, de Vries EG, Gietema JA, van der Zee AG, Willemse PH.

Eur J Cancer. 2009 May;45(7):1193-200. doi: 10.1016/j.ejca.2009.01.006. Epub 2009 Feb 7.

PMID:
19201598

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