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Next-Generation Sequencing Identifies Polyunsaturated Fatty Acid Responsive Genes in the Juvenile Rat Cerebellum.

Mehus AA, Dickey AM, Smith TPL, Yeater KM, Picklo MJ.

Nutrients. 2019 Feb 15;11(2). pii: E407. doi: 10.3390/nu11020407.


Short communication: Identification of the pseudoautosomal region in the Hereford bovine reference genome assembly ARS-UCD1.2.

Johnson T, Keehan M, Harland C, Lopdell T, Spelman RJ, Davis SR, Rosen BD, Smith TPL, Couldrey C.

J Dairy Sci. 2019 Jan 31. pii: S0022-0302(19)30102-X. doi: 10.3168/jds.2018-15638. [Epub ahead of print]


Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity.

Low WY, Tearle R, Bickhart DM, Rosen BD, Kingan SB, Swale T, Thibaud-Nissen F, Murphy TD, Young R, Lefevre L, Hume DA, Collins A, Ajmone-Marsan P, Smith TPL, Williams JL.

Nat Commun. 2019 Jan 16;10(1):260. doi: 10.1038/s41467-018-08260-0.


Complete Genome Sequence of a Salmonella enterica subsp. enterica Serovar Fresno Isolate Recovered from a Bovine Lymph Node.

Haley BJ, Smith TPL, Harhay GP, Loneragan GH, Webb HE, Bugarel M, Kim SW, Van Kessel JAS, Harhay DM.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01338-18. doi: 10.1128/MRA.01338-18. eCollection 2019 Jan.


Proton Pump Inhibitor Use Is Associated with an Increased Frequency of New or Worsening Hepatic Encephalopathy after Transjugular Intrahepatic Portosystemic Shunt Creation.

Lewis DS, Lee TH, Konanur M, Ziegler C, Hall MD, Pabon-Ramos WM, Suhocki PV, Smith TP, Kim CY, Choi SS, Ronald J.

J Vasc Interv Radiol. 2019 Feb;30(2):163-169. doi: 10.1016/j.jvir.2018.10.015. Epub 2019 Jan 11.


No Increased Mortality After TIPS Compared with Serial Large Volume Paracenteses in Patients with Higher Model for End-Stage Liver Disease Score and Refractory Ascites.

Ronald J, Rao R, Choi SS, Kappus M, Martin JG, Sag AA, Pabon-Ramos WM, Suhocki PV, Smith TP, Kim CY.

Cardiovasc Intervent Radiol. 2019 Jan 2. doi: 10.1007/s00270-018-02155-9. [Epub ahead of print]


Complete Closed Genome Sequences of Three Salmonella enterica subsp. enterica Serovar Dublin Strains Isolated from Cattle at Harvest.

Harhay DM, Smith TPL, Harhay GP, Loneragan GH, Webb HE, Bugarel M, Haley BJ, Kim SW, Van Kessel JAS.

Microbiol Resour Announc. 2018 Nov 29;7(21). pii: e01334-18. doi: 10.1128/MRA.01334-18. eCollection 2018 Nov.


Closed Genome Sequences and Antibiograms of 16 Pasteurella multocida Isolates from Bovine Respiratory Disease Complex Cases and Apparently Healthy Controls.

Harhay GP, Harhay DM, Bono JL, Smith TPL, Capik SF, DeDonder KD, Apley MD, Lubbers BV, White BJ, Larson RL.

Microbiol Resour Announc. 2018 Sep 20;7(11). pii: e00976-18. doi: 10.1128/MRA.00976-18. eCollection 2018 Sep.


Genome Sequences of Eight Shiga Toxin-Producing Escherichia coli Strains Isolated from a Produce-Growing Region in California.

Parker CT, Cooper KK, Huynh S, Smith TP, Bono JL, Cooley M.

Microbiol Resour Announc. 2018 Jul 12;7(1). pii: e00807-18. doi: 10.1128/MRA.00807-18. eCollection 2018 Jul.


Enhanced estimates of carcass and meat quality effects for polymorphisms in myostatin and µ-calpain genes.

Bennett GL, Tait RG Jr, Shackelford SD, Wheeler TL, King DA, Casas E, Smith TPL.

J Anim Sci. 2019 Feb 1;97(2):569-577. doi: 10.1093/jas/sky451.


Synaptogyrin-2 influences replication of Porcine circovirus 2.

Walker LR, Engle TB, Vu H, Tosky ER, Nonneman DJ, Smith TPL, Borza T, Burkey TE, Plastow GS, Kachman SD, Ciobanu DC.

PLoS Genet. 2018 Oct 31;14(10):e1007750. doi: 10.1371/journal.pgen.1007750. eCollection 2018 Oct.


De novo assembly of haplotype-resolved genomes with trio binning.

Koren S, Rhie A, Walenz BP, Dilthey AT, Bickhart DM, Kingan SB, Hiendleder S, Williams JL, Smith TPL, Phillippy AM.

Nat Biotechnol. 2018 Oct 22. doi: 10.1038/nbt.4277. [Epub ahead of print]


Predictors of Referral to a Pediatric Outpatient Chronic Pain Clinic.

Tumin D, Miller R, Hakim M, Shafy SZ, Drees D, Wrona S, Smith TP, Tobias JD, Bhalla T.

Clin J Pain. 2019 Mar;35(3):205-211. doi: 10.1097/AJP.0000000000000664.


Pediatric chronic pain and caregiver burden in a national survey.

Datz H, Tumin D, Miller R, Smith TP, Bhalla T, Tobias JD.

Scand J Pain. 2018 Sep 21. pii: /j/sjpain.ahead-of-print/sjpain-2018-0121/sjpain-2018-0121.xml. doi: 10.1515/sjpain-2018-0121. [Epub ahead of print]


Ultrasound-Guided, Continuous Brachial Plexus Blockade in a Neonate With Upper Extremity Limb Ischemia: A Case Report.

Hubbard RM, Cappuccio EC, Martin DP, Dairo OO, Smith TP, Corridore M, Bhalla T, Tobias JD.

A A Pract. 2018 Aug 31. doi: 10.1213/XAA.0000000000000879. [Epub ahead of print]


Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association.

Nguyen SV, Harhay DM, Bono JL, Smith TPL, Fields PI, Dinsmore BA, Santovenia M, Wang R, Bosilevac JM, Harhay GP.

Microb Genom. 2018 Aug;4(8). doi: 10.1099/mgen.0.000202. Epub 2018 Jul 27.


Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species.

Nowell RW, Almeida P, Wilson CG, Smith TP, Fontaneto D, Crisp A, Micklem G, Tunnacliffe A, Boschetti C, Barraclough TG.

PLoS Biol. 2018 Apr 24;16(4):e2004830. doi: 10.1371/journal.pbio.2004830. eCollection 2018 Apr.


A SNP resource for studying North American moose.

Kalbfleisch TS, Murdoch BM, Smith TPL, Murdoch JD, Heaton MP, McKay SD.

F1000Res. 2018 Jan 10;7:40. doi: 10.12688/f1000research.13501.1. eCollection 2018.


μ-Calpain (CAPN1), calpastatin (CAST), and growth hormone receptor (GHR) genetic effects on Angus beef heifer performance traits and reproduction.

Tait RG Jr, Cushman RA, McNeel AK, Casas E, Smith TPL, Freetly HC, Bennett GL.

Theriogenology. 2018 Jun;113:1-7. doi: 10.1016/j.theriogenology.2018.02.002. Epub 2018 Feb 3.


Use and misuse of temperature normalisation in meta-analyses of thermal responses of biological traits.

Kontopoulos DG, García-Carreras B, Sal S, Smith TP, Pawar S.

PeerJ. 2018 Feb 9;6:e4363. doi: 10.7717/peerj.4363. eCollection 2018.


Effects and interactions of myostatin and callipyge mutations: I. Growth and carcass traits.

Freking BA, King DA, Shackelford SD, Wheeler TL, Smith TPL.

J Anim Sci. 2018 Mar 6;96(2):454-461. doi: 10.1093/jas/skx055.


Maternal metabolic response to dietary treatment for impaired glucose tolerance and gestational diabetes mellitus.

Lindsay KL, Brennan L, Kennelly MA, Curran S, Coffey M, Smith TP, Foley ME, Hatunic M, McAuliffe FM.

Ir J Med Sci. 2018 Aug;187(3):701-708. doi: 10.1007/s11845-018-1744-y. Epub 2018 Jan 20.


Albumin-bilirubin grade versus MELD score for predicting survival after transjugular intrahepatic portosystemic shunt (TIPS) creation.

Ronald J, Wang Q, Choi SS, Suhocki PV, Hall MD, Smith TP, Kim CY.

Diagn Interv Imaging. 2018 Mar;99(3):163-168. doi: 10.1016/j.diii.2017.10.008. Epub 2017 Nov 16.


The antibody loci of the domestic goat (Capra hircus).

Schwartz JC, Philp RL, Bickhart DM, Smith TPL, Hammond JA.

Immunogenetics. 2018 May;70(5):317-326. doi: 10.1007/s00251-017-1033-3. Epub 2017 Oct 23.


Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50).

Williams JL, Iamartino D, Pruitt KD, Sonstegard T, Smith TPL, Low WY, Biagini T, Bomba L, Capomaccio S, Castiglioni B, Coletta A, Corrado F, Ferré F, Iannuzzi L, Lawley C, Macciotta N, McClure M, Mancini G, Matassino D, Mazza R, Milanesi M, Moioli B, Morandi N, Ramunno L, Peretti V, Pilla F, Ramelli P, Schroeder S, Strozzi F, Thibaud-Nissen F, Zicarelli L, Ajmone-Marsan P, Valentini A, Chillemi G, Zimin A.

Gigascience. 2017 Oct 1;6(10):1-6. doi: 10.1093/gigascience/gix088.


Closed Genome Sequences of Seven Histophilus somni Isolates from Beef Calves with Bovine Respiratory Disease Complex.

Harhay GP, Harhay DM, Bono JL, Smith TPL, Capik SF, DeDonder KD, Apley MD, Lubbers BV, White BJ, Larson RL.

Genome Announc. 2017 Oct 5;5(40). pii: e01099-17. doi: 10.1128/genomeA.01099-17.


Using sheep genomes from diverse U.S. breeds to identify missense variants in genes affecting fecundity.

Heaton MP, Smith TPL, Freking BA, Workman AM, Bennett GL, Carnahan JK, Kalbfleisch TS.

F1000Res. 2017 Aug 2;6:1303. doi: 10.12688/f1000research.12216.1. eCollection 2017.


Stilbene Boronic Acids Form a Covalent Bond with Human Transthyretin and Inhibit Its Aggregation.

Smith TP, Windsor IW, Forest KT, Raines RT.

J Med Chem. 2017 Sep 28;60(18):7820-7834. doi: 10.1021/acs.jmedchem.7b00952. Epub 2017 Sep 18.


Hemorrhage risk with transjugular intrahepatic portosystemic shunt (TIPS) insertion at the main portal vein bifurcation with stent grafts.

Griffin AS, Preece SR, Ronald J, Smith TP, Suhocki PV, Kim CY.

Diagn Interv Imaging. 2017 Dec;98(12):837-842. doi: 10.1016/j.diii.2017.07.006. Epub 2017 Aug 31.


Analysis of the gut bacterial communities in beef cattle and their association with feed intake, growth, and efficiency.

Myer PR, Freetly HC, Wells JE, Smith TPL, Kuehn LA.

J Anim Sci. 2017 Jul;95(7):3215-3224. doi: 10.2527/jas.2016.1059.


A high-quality annotated transcriptome of swine peripheral blood.

Liu H, Smith TPL, Nonneman DJ, Dekkers JCM, Tuggle CK.

BMC Genomics. 2017 Jun 24;18(1):479. doi: 10.1186/s12864-017-3863-7.


Vaginal and Uterine Bacterial Communities in Postpartum Lactating Cows.

Clemmons BA, Reese ST, Dantas FG, Franco GA, Smith TPL, Adeyosoye OI, Pohler KG, Myer PR.

Front Microbiol. 2017 Jun 8;8:1047. doi: 10.3389/fmicb.2017.01047. eCollection 2017.


Endovascular Therapies for Acute Ischemic Stroke in Children.

Cobb MIH, Laarakker AS, Gonzalez LF, Smith TP, Hauck EF, Zomorodi AR.

Stroke. 2017 Jul;48(7):2026-2030. doi: 10.1161/STROKEAHA.117.016887. Epub 2017 Jun 8. Review. No abstract available.


Treatment of central venous in-stent restenosis with repeat stent deployment in hemodialysis patients.

Ronald J, Davis B, Guevara CJ, Pabon-Ramos WM, Smith TP, Kim CY.

J Vasc Access. 2017 May 15;18(3):214-219. doi: 10.5301/jva.5000705. Epub 2017 Apr 20.


Complete Genome Sequences of Two Genotype A2 Small Ruminant Lentiviruses Isolated from Infected U.S. Sheep.

Workman AM, Dickey AM, Heaton MP, Clawson ML, Smith TP.

Genome Announc. 2017 Mar 30;5(13). pii: e00109-17. doi: 10.1128/genomeA.00109-17.


Clinical implications of acute pelvicaliceal hematoma formation during percutaneous catheter nephrostomy insertion.

Stewart JK, Smith TP, Kim CY.

Clin Imaging. 2017 May - Jun;43:180-183. doi: 10.1016/j.clinimag.2017.02.009. Epub 2017 Mar 1.


Carotid Endarterectomy to Remove Retained Solitaire Stent Retriever inside Carotid Stent after Mechanical Thrombectomy.

Cobb MIH, Smith TP, Brown PA, Gonzalez LF, Zomorodi AR.

J Stroke Cerebrovasc Dis. 2017 May;26(5):e90-e95. doi: 10.1016/j.jstrokecerebrovasdis.2017.02.015. Epub 2017 Mar 17.


Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms.

Nguyen SV, Harhay GP, Bono JL, Smith TP, Harhay DM.

mSystems. 2017 Feb 28;2(1). pii: e00190-16. doi: 10.1128/mSystems.00190-16. eCollection 2017 Jan-Feb.


Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.

Bickhart DM, Rosen BD, Koren S, Sayre BL, Hastie AR, Chan S, Lee J, Lam ET, Liachko I, Sullivan ST, Burton JN, Huson HJ, Nystrom JC, Kelley CM, Hutchison JL, Zhou Y, Sun J, Crisà A, Ponce de León FA, Schwartz JC, Hammond JA, Waldbieser GC, Schroeder SG, Liu GE, Dunham MJ, Shendure J, Sonstegard TS, Phillippy AM, Van Tassell CP, Smith TP.

Nat Genet. 2017 Apr;49(4):643-650. doi: 10.1038/ng.3802. Epub 2017 Mar 6.


The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation.

Schwartz JC, Gibson MS, Heimeier D, Koren S, Phillippy AM, Bickhart DM, Smith TP, Medrano JF, Hammond JA.

Immunogenetics. 2017 Apr;69(4):255-269. doi: 10.1007/s00251-017-0973-y. Epub 2017 Feb 9.


A Boronic Acid Conjugate of Angiogenin that Shows ROS-Responsive Neuroprotective Activity.

Hoang TT, Smith TP, Raines RT.

Angew Chem Int Ed Engl. 2017 Mar 1;56(10):2619-2622. doi: 10.1002/anie.201611446. Epub 2017 Jan 25.


Percutaneous biliary drainage catheter insertion in patients with extensive hepatic metastatic tumor burden.

Langman EL, Suhocki PV, Hurwitz HI, Morse MA, Burbridge RA, Smith TP, Kim CY.

J Gastrointest Oncol. 2016 Dec;7(6):875-881. doi: 10.21037/jgo.2016.06.13.


Optimal pediatric dosing of anti-platelet agents for pipeline stent embolization -a case report and review of the literature.

Cobb MIH, Zomorodi AR, Hauck EF, Smith TP, Fernando Gonzalez L.

Childs Nerv Syst. 2017 Apr;33(4):685-690. doi: 10.1007/s00381-016-3311-z. Epub 2016 Dec 12. Review.


Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes.

Clawson ML, Murray RW, Sweeney MT, Apley MD, DeDonder KD, Capik SF, Larson RL, Lubbers BV, White BJ, Kalbfleisch TS, Schuller G, Dickey AM, Harhay GP, Heaton MP, Chitko-McKown CG, Brichta-Harhay DM, Bono JL, Smith TP.

BMC Genomics. 2016 Nov 29;17(1):982.


Randomized Controlled Trial of Octyl Cyanoacrylate Skin Adhesive versus Subcuticular Suture for Skin Closure after Implantable Venous Port Placement.

Martin JG, Hollenbeck ST, Janas G, Makar RA, Pabon-Ramos WM, Suhocki PV, Miller MJ, Sopko DR, Smith TP, Kim CY.

J Vasc Interv Radiol. 2017 Jan;28(1):111-116. doi: 10.1016/j.jvir.2016.08.009. Epub 2016 Nov 9.


Characterization of a new chlorovirus type with permissive and non-permissive features on phylogenetically related algal strains.

Quispe CF, Esmael A, Sonderman O, McQuinn M, Agarkova I, Battah M, Duncan GA, Dunigan DD, Smith TPL, De Castro C, Speciale I, Ma F, Van Etten JL.

Virology. 2017 Jan;500:103-113. doi: 10.1016/j.virol.2016.10.013. Epub 2016 Oct 27.


Complete, Closed Genome Sequences of 10 Salmonella enterica subsp. enterica Serovar Typhimurium Strains Isolated from Human and Bovine Sources.

Nguyen SV, Harhay DM, Bono JL, Smith TP, Fields PI, Dinsmore BA, Santovenia M, Kelley CM, Wang R, Bosilevac JM, Harhay GP.

Genome Announc. 2016 Nov 3;4(6). pii: e01212-16. doi: 10.1128/genomeA.01212-16.


Using diverse U.S. beef cattle genomes to identify missense mutations in EPAS1, a gene associated with pulmonary hypertension.

Heaton MP, Smith TP, Carnahan JK, Basnayake V, Qiu J, Simpson B, Kalbfleisch TS.

Version 2. F1000Res. 2016 Aug 16 [revised 2016 Jan 1];5:2003. eCollection 2016.


Whole genomic sequence analysis of Bacillus infantis: defining the genetic blueprint of strain NRRL B-14911, an emerging cardiopathogenic microbe.

Massilamany C, Mohammed A, Loy JD, Purvis T, Krishnan B, Basavalingappa RH, Kelley CM, Guda C, Barletta RG, Moriyama EN, Smith TP, Reddy J.

BMC Genomics. 2016 Aug 22;17 Suppl 7:511. doi: 10.1186/s12864-016-2900-2.

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