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Bioinformatics core competencies for undergraduate life sciences education.

Wilson Sayres MA, Hauser C, Sierk M, Robic S, Rosenwald AG, Smith TM, Triplett EW, Williams JJ, Dinsdale E, Morgan WR, Burnette JM 3rd, Donovan SS, Drew JC, Elgin SCR, Fowlks ER, Galindo-Gonzalez S, Goodman AL, Grandgenett NF, Goller CC, Jungck JR, Newman JD, Pearson W, Ryder EF, Tosado-Acevedo R, Tapprich W, Tobin TC, Toro-Martínez A, Welch LR, Wright R, Barone L, Ebenbach D, McWilliams M, Olney KC, Pauley MA.

PLoS One. 2018 Jun 5;13(6):e0196878. doi: 10.1371/journal.pone.0196878. eCollection 2018.


Autophagy-deficient breast cancer shows early tumor recurrence and escape from dormancy.

Aqbi HF, Tyutyunyk-Massey L, Keim RC, Butler SE, Thekkudan T, Joshi S, Smith TM, Bandyopadhyay D, Idowu MO, Bear HD, Payne KK, Gewirtz DA, Manjili MH.

Oncotarget. 2018 Apr 24;9(31):22113-22122. doi: 10.18632/oncotarget.25197. eCollection 2018 Apr 24.


Technical Assistance and Changes in Nutrition and Physical Activity Practices in the National Early Care and Education Learning Collaboratives Project, 2015-2016.

Chiappone A, Smith TM, Estabrooks PA, Rasmussen CG, Blaser C, Yaroch AL.

Prev Chronic Dis. 2018 Apr 26;15:E47. doi: 10.5888/pcd15.170239.


Correlates of fruit and vegetable intake among parents and adolescents: findings from the Family Life, Activity, Sun, Health, and Eating (FLASHE) study.

Parks CA, Blaser C, Smith TM, Calloway EE, Oh AY, Dwyer LA, Liu B, Nebeling LC, Yaroch AL.

Public Health Nutr. 2018 Apr 16:1-9. doi: 10.1017/S1368980018000770. [Epub ahead of print]


Nitric oxide-mediated posttranslational modifications control neurotransmitter release by modulating complexin farnesylation and enhancing its clamping ability.

Robinson SW, Bourgognon JM, Spiers JG, Breda C, Campesan S, Butcher A, Mallucci GR, Dinsdale D, Morone N, Mistry R, Smith TM, Guerra-Martin M, Challiss RAJ, Giorgini F, Steinert JR.

PLoS Biol. 2018 Apr 9;16(4):e2003611. doi: 10.1371/journal.pbio.2003611. eCollection 2018 Apr.


Phylogenetic homogenization of amphibian assemblages in human-altered habitats across the globe.

Nowakowski AJ, Frishkoff LO, Thompson ME, Smith TM, Todd BD.

Proc Natl Acad Sci U S A. 2018 Apr 10;115(15):E3454-E3462. doi: 10.1073/pnas.1714891115. Epub 2018 Mar 19.


Validation of the Simulated Vaginal Hysterectomy Trainer.

Vaughan MH, Kim-Fine S, Hullfish KL, Smith TM, Siddiqui NY, Trowbridge ER.

J Minim Invasive Gynecol. 2018 Mar 7. pii: S1553-4650(18)30152-3. doi: 10.1016/j.jmig.2018.02.022. [Epub ahead of print]


Fragment-Based Drug Discovery of Inhibitors of Phosphopantetheine Adenylyltransferase from Gram-Negative Bacteria.

Moreau RJ, Skepper CK, Appleton BA, Blechschmidt A, Balibar CJ, Benton BM, Drumm JE 3rd, Feng BY, Geng M, Li C, Lindvall MK, Lingel A, Lu Y, Mamo M, Mergo W, Polyakov V, Smith TM, Takeoka K, Uehara K, Wang L, Wei JR, Weiss AH, Xie L, Xu W, Zhang Q, de Vicente J.

J Med Chem. 2018 Apr 26;61(8):3309-3324. doi: 10.1021/acs.jmedchem.7b01691. Epub 2018 Apr 9.


Photochemically Induced Crosslinking of Tarsal Collagen as a Treatment for Eyelid Laxity: Assessing Potentiality in Animal Tissue.

Smith TM, Suzuki S, Cronin BG, Haghighatpanah M, Petcu EB, Philippa CJ, Chirila TV.

Ophthalmic Plast Reconstr Surg. 2018 Feb 5. doi: 10.1097/IOP.0000000000001063. [Epub ahead of print]


Six2 Plays an Intrinsic Role in Regulating Proliferation of Mesenchymal Cells in the Developing Palate.

Okello DO, Iyyanar PPR, Kulyk WM, Smith TM, Lozanoff S, Ji S, Nazarali AJ.

Front Physiol. 2017 Nov 23;8:955. doi: 10.3389/fphys.2017.00955. eCollection 2017.


Adaptation in a Fibronectin Binding Autolysin of Staphylococcus saprophyticus.

Mortimer TD, Annis DS, O'Neill MB, Bohr LL, Smith TM, Poinar HN, Mosher DF, Pepperell CS.

mSphere. 2017 Nov 29;2(6). pii: e00511-17. doi: 10.1128/mSphere.00511-17. eCollection 2017 Nov-Dec.


Current Demographics and Roles of Florida Community Health Workers: Implications for Future Recruitment and Training.

Tucker CM, Smith TM, Hogan ML, Banzhaf M, Molina N, Rodríguez B.

J Community Health. 2018 Jun;43(3):552-559. doi: 10.1007/s10900-017-0451-3.


Feasibility of Using a Community-Supported Agriculture Program to Increase Access to and Intake of Vegetables among Federally Qualified Health Center Patients.

Izumi BT, Higgins CE, Baron A, Ness SJ, Allan B, Barth ET, Smith TM, Pranian K, Frank B.

J Nutr Educ Behav. 2018 Mar;50(3):289-296.e1. doi: 10.1016/j.jneb.2017.09.016. Epub 2017 Nov 22.


Meals for Good: An innovative community project to provide healthy meals to children in early care and education programs through food bank catering.

Carpenter LR, Smith TM, Stern K, Boyd LW, Rasmussen CG, Schaffer K, Shuell J, Broussard K, Yaroch AL.

Prev Med Rep. 2017 Nov 6;8:210-214. doi: 10.1016/j.pmedr.2017.10.015. eCollection 2017 Dec.


Perceptions of general and postpresidential election discrimination are associated with loss of control eating among racially/ethnically diverse young men.

Kelly NR, Smith TM, Hall GCN, Guidinger C, Williamson G, Budd EL, Giuliani NR.

Int J Eat Disord. 2018 Jan;51(1):28-38. doi: 10.1002/eat.22803. Epub 2017 Nov 17.


Contrasting effects of ocean warming on different components of plant-herbivore interactions.

Pagès JF, Smith TM, Tomas F, Sanmartí N, Boada J, De Bari H, Pérez M, Romero J, Arthur R, Alcoverro T.

Mar Pollut Bull. 2017 Oct 23. pii: S0025-326X(17)30882-2. doi: 10.1016/j.marpolbul.2017.10.036. [Epub ahead of print]


Synchrotron imaging and Markov Chain Monte Carlo reveal tooth mineralization patterns.

Green DR, Green GM, Colman AS, Bidlack FB, Tafforeau P, Smith TM.

PLoS One. 2017 Oct 19;12(10):e0186391. doi: 10.1371/journal.pone.0186391. eCollection 2017.


A cooperative governance network for crop genome editing: The success of governance networks in other areas could help to find common ground for applying genome editing in agriculture.

Jordan NR, Dorn KM, Smith TM, Wolf KE, Ewing PM, Fernandez AL, Runck BC, Williams A, Lu Y, Kuzma J.

EMBO Rep. 2017 Oct;18(10):1683-1687. doi: 10.15252/embr.201744394. Epub 2017 Sep 19. No abstract available.


Preimmunization with a heat-killed preparation of Mycobacterium vaccae enhances fear extinction in the fear-potentiated startle paradigm.

Fox JH, Hassell JE Jr, Siebler PH, Arnold MR, Lamb AK, Smith DG, Day HEW, Smith TM, Simmerman EM, Outzen AA, Holmes KS, Brazell CJ, Lowry CA.

Brain Behav Immun. 2017 Nov;66:70-84. doi: 10.1016/j.bbi.2017.08.014. Epub 2017 Sep 6.


Subnational mobility and consumption-based environmental accounting of US corn in animal protein and ethanol supply chains.

Smith TM, Goodkind AL, Kim T, Pelton REO, Suh K, Schmitt J.

Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):E7891-E7899. doi: 10.1073/pnas.1703793114. Epub 2017 Sep 5.


Marginal Emission Factors Considering Renewables: A Case Study of the U.S. Midcontinent Independent System Operator (MISO) System.

Li M, Smith TM, Yang Y, Wilson EJ.

Environ Sci Technol. 2017 Oct 3;51(19):11215-11223. doi: 10.1021/acs.est.7b00034. Epub 2017 Sep 19.


Improving Nutrition and Physical Activity Policies and Practices in Early Care and Education in Three States, 2014-2016.

Smith TM, Blaser C, Geno-Rasmussen C, Shuell J, Plumlee C, Gargano T, Yaroch AL.

Prev Chronic Dis. 2017 Aug 31;14:E73. doi: 10.5888/pcd14.160513.


Syringe Filling of High-Concentration mAb Formulation: Slow Suck-Back Pump Speed Prevented Filling Needle Clogging.

Hanslip S, Desai KG, Palmer M, Bell S, Schofield P, Varma P, Roche F, Colandene JD, Smith TM, Nesta DP.

J Pharm Sci. 2017 Dec;106(12):3651-3653. doi: 10.1016/j.xphs.2017.08.005. Epub 2017 Aug 24.


An early modern human presence in Sumatra 73,000-63,000 years ago.

Westaway KE, Louys J, Awe RD, Morwood MJ, Price GJ, Zhao JX, Aubert M, Joannes-Boyau R, Smith TM, Skinner MM, Compton T, Bailey RM, van den Bergh GD, de Vos J, Pike AWG, Stringer C, Saptomo EW, Rizal Y, Zaim J, Santoso WD, Trihascaryo A, Kinsley L, Sulistyanto B.

Nature. 2017 Aug 17;548(7667):322-325. doi: 10.1038/nature23452. Epub 2017 Aug 9.


Cyclical nursing patterns in wild orangutans.

Smith TM, Austin C, Hinde K, Vogel ER, Arora M.

Sci Adv. 2017 May 17;3(5):e1601517. doi: 10.1126/sciadv.1601517. eCollection 2017 May.


Factors Associated With Erectile Dysfunction and the Peyronie's Disease Questionnaire in Patients With Peyronie Disease.

Serefoglu EC, Smith TM, Kaufman GJ, Liu G, Yafi FA, Hellstrom WJG.

Urology. 2017 Sep;107:155-160. doi: 10.1016/j.urology.2017.05.029. Epub 2017 May 26.


Using Secondary 24-Hour Dietary Recall Data to Estimate Daily Dietary Factor Intake From the FLASHE Study Dietary Screener.

Smith TM, Calloway EE, Pinard CA, Hennessy E, Oh AY, Nebeling LC, Yaroch AL.

Am J Prev Med. 2017 Jun;52(6):856-862. doi: 10.1016/j.amepre.2017.01.015.


Seed germination in a southern Australian temperate seagrass.

Cumming E, Jarvis JC, Sherman CD, York PH, Smith TM.

PeerJ. 2017 Mar 23;5:e3114. doi: 10.7717/peerj.3114. eCollection 2017.


Assessment of nutrition and physical activity practices using self-report and observation in early care and education across multiple US states.

Smith TM, Blaser C, Geno Rasmussen C, Shuell J, Plumlee C, Yaroch AL.

Public Health Nutr. 2017 Jun;20(9):1692-1698. doi: 10.1017/S1368980017000155. Epub 2017 Mar 6.


Phase transformation strengthening of high-temperature superalloys.

Smith TM, Esser BD, Antolin N, Carlsson A, Williams RE, Wessman A, Hanlon T, Fraser HL, Windl W, McComb DW, Mills MJ.

Nat Commun. 2016 Nov 22;7:13434. doi: 10.1038/ncomms13434.


Physical and Psychological Effects of a 12-Session Cancer Rehabilitation Exercise Program.

Smith TM, Broomhall CN, Crecelius AR.

Clin J Oncol Nurs. 2016 Dec 1;20(6):653-659.


Patient Satisfaction With Nurse-Led Telephone Follow-up in an Ambulatory Setting.

Schimpf MO, Fenner DE, Smith TM, Tucker J, Berger MB.

Female Pelvic Med Reconstr Surg. 2016 Nov/Dec;22(6):430-432.


The Future of the Small Rural Grocery Store: A Qualitative Exploration.

Pinard CA, Fricke HE, Smith TM, Carpenter LR, Yaroch AL.

Am J Health Behav. 2016 Nov;40(6):749-760. doi: 10.5993/AJHB.40.6.7.


Intraoperative cervix location and apical support stiffness in women with and without pelvic organ prolapse.

Swenson CW, Smith TM, Luo J, Kolenic GE, Ashton-Miller JA, DeLancey JO.

Am J Obstet Gynecol. 2017 Feb;216(2):155.e1-155.e8. doi: 10.1016/j.ajog.2016.09.074. Epub 2016 Sep 8.


Snack Food, Satiety, and Weight.

Njike VY, Smith TM, Shuval O, Shuval K, Edshteyn I, Kalantari V, Yaroch AL.

Adv Nutr. 2016 Sep 15;7(5):866-78. doi: 10.3945/an.115.009340. Print 2016 Sep. Review.


Spatial variation in reproductive effort of a southern Australian seagrass.

Smith TM, York PH, Macreadie PI, Keough MJ, Ross DJ, Sherman CD.

Mar Environ Res. 2016 Sep;120:214-24. doi: 10.1016/j.marenvres.2016.08.010. Epub 2016 Aug 26.


Auxiliary measures to assess factors related to food insecurity: Preliminary testing and baseline characteristics of newly designed hunger-coping scales.

Pinard C, Smith TM, Calloway EE, Fricke HE, Bertmann FM, Yaroch AL.

Prev Med Rep. 2016 Jun 29;4:289-95. doi: 10.1016/j.pmedr.2016.06.021. eCollection 2016 Dec.


Identifying knowledge gaps in seagrass research and management: An Australian perspective.

York PH, Smith TM, Coles RG, McKenna SA, Connolly RM, Irving AD, Jackson EL, McMahon K, Runcie JW, Sherman CDH, Sullivan BK, Trevathan-Tackett SM, Brodersen KE, Carter AB, Ewers CJ, Lavery PS, Roelfsema CM, Sinclair EA, Strydom S, Tanner JE, van Dijk KJ, Warry FY, Waycott M, Whitehead S.

Mar Environ Res. 2017 Jun;127:163-172. doi: 10.1016/j.marenvres.2016.06.006. Epub 2016 Jun 16.


A Fluorescence-Based High-Throughput Screening Assay to Identify Growth Inhibitors of the Pathogenic Fungus Aspergillus fumigatus.

Smith TM, Richie DL, Tao J.

Methods Mol Biol. 2016;1439:171-9. doi: 10.1007/978-1-4939-3673-1_11.


Motivators of and Barriers to Engagement in Healthy Eating Behaviors among non-Hispanic Black Adults.

Nolan SE, Tucker CM, Flenar DJ, Arthur TM, Smith TM.

J Racial Ethn Health Disparities. 2016 Sep;3(3):473-83. doi: 10.1007/s40615-015-0164-1. Epub 2015 Oct 1.


Dental development in living and fossil orangutans.

Smith TM.

J Hum Evol. 2016 May;94:92-105. doi: 10.1016/j.jhevol.2016.02.008. Epub 2016 Apr 14.


Optimizing Eco-Efficiency Across the Procurement Portfolio.

Pelton RE, Li M, Smith TM, Lyon TP.

Environ Sci Technol. 2016 Jun 7;50(11):5908-18. doi: 10.1021/acs.est.5b06289. Epub 2016 May 26.


Frequency of visits to a health care provider, health promoting behaviors, and perceived health status among African American women.

Smith TM, Tucker CM, Arthur TM, Wippold GM, Tran S.

Women Health. 2017 May-Jun;57(5):583-598. doi: 10.1080/03630242.2016.1178683. Epub 2016 Apr 19.


Corrigendum: SMN2 splice modulators enhance U1-pre-mRNA association and rescue SMA mice.

Palacino J, Swalley SE, Song C, Cheung AK, Shu L, Zhang X, Van Hoosear M, Shin Y, Chin DN, Keller CG, Beibel M, Renaud NA, Smith TM, Salcius M, Shi X, Hild M, Servais R, Jain M, Deng L, Bullock C, McLellan M, Schuierer S, Murphy L, Blommers MJ, Blaustein C, Berenshteyn F, Lacoste A, Thomas JR, Roma G, Michaud GA, Tseng BS, Porter JA, Myer VE, Tallarico JA, Hamann LG, Curtis D, Fishman MC, Dietrich WF, Dales NA, Sivasankaran R.

Nat Chem Biol. 2016 Apr;12(4):304. doi: 10.1038/nchembio0416-304c. No abstract available.


Uncovering system-specific stress signatures in primate teeth with multimodal imaging.

Austin C, Smith TM, Farahani RM, Hinde K, Carter EA, Lee J, Lay PA, Kennedy BJ, Sarrafpour B, Wright RJ, Wright RO, Arora M.

Sci Rep. 2016 Jan 4;6:18802. doi: 10.1038/srep18802.


Household food insecurity as a determinant of overweight and obesity among low-income Hispanic subgroups: Data from the 2011-2012 California Health Interview Survey.

Smith TM, Colón-Ramos U, Pinard CA, Yaroch AL.

Appetite. 2016 Feb 1;97:37-42. doi: 10.1016/j.appet.2015.11.009. Epub 2015 Nov 19.


G9a is essential for epigenetic silencing of K(+) channel genes in acute-to-chronic pain transition.

Laumet G, Garriga J, Chen SR, Zhang Y, Li DP, Smith TM, Dong Y, Jelinek J, Cesaroni M, Issa JP, Pan HL.

Nat Neurosci. 2015 Dec;18(12):1746-55. doi: 10.1038/nn.4165. Epub 2015 Nov 9.


Healthy Neighborhood Stores: Key Recommendations for Working with Owners of Small Stores in Communities of High Need.

Smith TM, Schram S, Tibbits M, Wang H, Balluff M.

J Acad Nutr Diet. 2016 Mar;116(3):395-398. doi: 10.1016/j.jand.2015.08.018. Epub 2015 Oct 9. No abstract available.


Development and Testing of a Revised Cooking Matters for Adults Survey.

Pinard CA, Uvena LM, Quam JB, Smith TM, Yaroch AL.

Am J Health Behav. 2015 Nov;39(6):866-73. doi: 10.5993/AJHB.39.6.14.


Corrigendum: SMN2 splice modulators enhance U1-pre-mRNA association and rescue SMA mice.

Palacino J, Swalley SE, Song C, Cheung AK, Shu L, Zhang X, Van Hoosear M, Shin Y, Chin DN, Keller CG, Beibel M, Renaud NA, Smith TM, Salcius M, Shi X, Hild M, Servais R, Jain M, Deng L, Bullock C, McLellan M, Schuierer S, Murphy L, Blommers MJ, Blaustein C, Berenshteyn F, Lacoste A, Thomas JR, Roma G, Michaud GA, Tseng BS, Porter JA, Myer VE, Tallarico JA, Hamann LG, Curtis D, Fishman MC, Dietrich WF, Dales NA, Sivasankaran R.

Nat Chem Biol. 2015 Sep;11(9):741. doi: 10.1038/nchembio0915-741a. No abstract available.


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