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Proteogenomic Characterization of Endometrial Carcinoma.

Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, Cao S, Moon J, Shi Z, Cornwell M, Wyczalkowski MA, Chu RK, Vasaikar S, Zhou H, Gao Q, Moore RJ, Li K, Sethuraman S, Monroe ME, Zhao R, Heiman D, Krug K, Clauser K, Kothadia R, Maruvka Y, Pico AR, Oliphant AE, Hoskins EL, Pugh SL, Beecroft SJI, Adams DW, Jarman JC, Kong A, Chang HY, Reva B, Liao Y, Rykunov D, Colaprico A, Chen XS, Czekański A, Jędryka M, Matkowski R, Wiznerowicz M, Hiltke T, Boja E, Kinsinger CR, Mesri M, Robles AI, Rodriguez H, Mutch D, Fuh K, Ellis MJ, DeLair D, Thiagarajan M, Mani DR, Getz G, Noble M, Nesvizhskii AI, Wang P, Anderson ML, Levine DA, Smith RD, Payne SH, Ruggles KV, Rodland KD, Ding L, Zhang B, Liu T, Fenyö D; Clinical Proteomic Tumor Analysis Consortium.

Cell. 2020 Feb 20;180(4):729-748.e26. doi: 10.1016/j.cell.2020.01.026. Epub 2020 Feb 13.


Linkage between Neighborhood Social Cohesion and BMI of South Asians in the Masala Study.

Gill G, Lancki N, Randhawa M, Mann SK, Arechiga A, Smith RD, Soret S, Kanaya AM, Kandula N.

J Obes. 2020 Jan 7;2020:7937530. doi: 10.1155/2020/7937530. eCollection 2020.


Post-operative urinary catheter removal for Enhanced Recovery After Cesarean protocols.

Peahl AF, Kountanis J, Smith RD.

Am J Obstet Gynecol. 2020 Jan 22. pii: S0002-9378(20)30061-2. doi: 10.1016/j.ajog.2020.01.040. [Epub ahead of print] No abstract available.


Increased activation of the fear neurocircuitry in children exposed to violence.

van Rooij SJH, Smith RD, Stenson AF, Ely TD, Yang X, Tottenham N, Stevens JS, Jovanovic T.

Depress Anxiety. 2020 Jan 17. doi: 10.1002/da.22994. [Epub ahead of print]


Case selection for urological input in planned laparoscopic rectovaginal endometriosis surgery.

Fisher G, Smith RD, Saridogan E, Vashisht A, Allen S, Arumuham V, Cutner A.

Facts Views Vis Obgyn. 2019 Jun;11(2):111-117.


Ion Mobility Spectrometry and the Omics: Distinguishing Isomers, Molecular Classes and Contaminant Ions in Complex Samples.

Burnum-Johnson KE, Zheng X, Dodds JN, Ash J, Fourches D, Nicora CD, Wendler JP, Metz TO, Waters KM, Jansson JK, Smith RD, Baker ES.

Trends Analyt Chem. 2019 Jul;116:292-299. doi: 10.1016/j.trac.2019.04.022. Epub 2019 Apr 29.


Psychotherapy in the #MeToo era: Ethical issues.

Smith RD, Holmberg J, Cornish JE.

Psychotherapy (Chic). 2019 Dec;56(4):483-490. doi: 10.1037/pst0000262. Epub 2019 Oct 28.


International trade, dietary change, and cardiovascular disease health outcomes: Import tariff reform using an integrated macroeconomic, environmental and health modelling framework for Thailand.

Jensen HT, Keogh-Brown MR, Shankar B, Aekplakorn W, Basu S, Cuevas S, Dangour AD, Gheewala SH, Green R, Joy E, Rojroongwasinkul N, Thaiprasert N, Smith RD.

SSM Popul Health. 2019 Jul 31;9:100435. doi: 10.1016/j.ssmph.2019.100435. eCollection 2019 Dec.


Traveling-Wave-Based Electrodynamic Switch for Concurrent Dual-Polarity Ion Manipulations in Structures for Lossless Ion Manipulations.

Attah IK, Nagy G, Garimella SVB, Norheim RV, Anderson GA, Ibrahim YM, Smith RD.

Anal Chem. 2019 Nov 19;91(22):14712-14718. doi: 10.1021/acs.analchem.9b03987. Epub 2019 Oct 30.


High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform.

Dou M, Clair G, Tsai CF, Xu K, Chrisler WB, Sontag RL, Zhao R, Moore RJ, Liu T, Pasa-Tolic L, Smith RD, Shi T, Adkins JN, Qian WJ, Kelly RT, Ansong C, Zhu Y.

Anal Chem. 2019 Oct 15;91(20):13119-13127. doi: 10.1021/acs.analchem.9b03349. Epub 2019 Sep 25.


Potential impact on prevalence of obesity in the UK of a 20% price increase in high sugar snacks: modelling study.

Scheelbeek PFD, Cornelsen L, Marteau TM, Jebb SA, Smith RD.

BMJ. 2019 Sep 4;366:l4786. doi: 10.1136/bmj.l4786.


Characterization of applied fields for ion mobility separations in traveling wave based structures for lossless ion manipulations (SLIM).

Hamid AM, Prabhakaran A, Garimella SVB, Ibrahim YM, Smith RD.

Int J Mass Spectrom. 2018 Jul;430:8-13. doi: 10.1016/j.ijms.2018.03.006. Epub 2018 Mar 26.


SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes.

Wojcik R, Nagy G, Attah IK, Webb IK, Garimella SVB, Weitz KK, Hollerbach A, Monroe ME, Ligare MR, Nielson FF, Norheim RV, Renslow RS, Metz TO, Ibrahim YM, Smith RD.

Anal Chem. 2019 Sep 17;91(18):11952-11962. doi: 10.1021/acs.analchem.9b02808. Epub 2019 Sep 6.


Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium Synechococcus elongatus UTEX 2973.

Nagarajan A, Zhou M, Nguyen AY, Liberton M, Kedia K, Shi T, Piehowski P, Shukla A, Fillmore TL, Nicora C, Smith RD, Koppenaal DW, Jacobs JM, Pakrasi HB.

Biomolecules. 2019 Aug 16;9(8). pii: E374. doi: 10.3390/biom9080374.


Increased β-cell proliferation before immune cell invasion prevents progression of type 1 diabetes.

Dirice E, Kahraman S, De Jesus DF, El Ouaamari A, Basile G, Baker RL, Yigit B, Piehowski PD, Kim MJ, Dwyer AJ, Ng RWS, Schuster C, Vethe H, Martinov T, Ishikawa Y, Teo AKK, Smith RD, Hu J, Haskins K, Serwold T, Qian WJ, Fife BT, Kissler S, Kulkarni RN.

Nat Metab. 2019 May;1(5):509-518. doi: 10.1038/s42255-019-0061-8. Epub 2019 May 6.


Evidence on the magnitude of the economic, health and population effects of palm cooking oil consumption: an integrated modelling approach with Thailand as a case study.

Keogh-Brown MR, Jensen HT, Basu S, Aekplakorn W, Cuevas S, Dangour AD, Gheewala SH, Green R, Joy EJ, Rojroongwasinkul N, Thaiprasert N, Shankar B, Smith RD.

Popul Health Metr. 2019 Aug 16;17(1):12. doi: 10.1186/s12963-019-0191-y.


Tandem Mass Tag Labeling Facilitates Reversed-Phase Liquid Chromatography-Mass Spectrometry Analysis of Hydrophilic Phosphopeptides.

Tsai CF, Smith JS, Krajewski K, Zhao R, Moghieb AM, Nicora CD, Xiong X, Moore RJ, Liu T, Smith RD, Jacobs JM, Rajagopal S, Shi T.

Anal Chem. 2019 Sep 17;91(18):11606-11613. doi: 10.1021/acs.analchem.9b01814. Epub 2019 Aug 28.


Psychotherapists in danger: The ethics of responding to client threats, stalking, and harassment.

Erickson Cornish JA, Smith RD, Holmberg JR, Dunn TM, Siderius LL.

Psychotherapy (Chic). 2019 Dec;56(4):441-448. doi: 10.1037/pst0000248. Epub 2019 Aug 15.


The spread of radiology in India from 1941 to 1956.

Smith RD.

Indian J Cancer. 2019 Jul-Sep;56(3):285-286. doi: 10.4103/0019-509X.263039.


Folding and Assembly of Short α, β, γ-Hybrid Peptides: Minor Variations in Sequence and Drastic Differences in Higher-Level Structures.

Zhang Y, Zhong Y, Connor AL, Miller DP, Cao R, Shen J, Song B, Baker ES, Tang Q, Pulavarti SVSRK, Liu R, Wang Q, Lu ZL, Szyperski T, Zeng H, Li X, Smith RD, Zurek E, Zhu J, Gong B.

J Am Chem Soc. 2019 Sep 11;141(36):14239-14248. doi: 10.1021/jacs.9b06094. Epub 2019 Aug 26.


History of the Growing Burden of Cancer in India: From Antiquity to the 21st Century.

Smith RD, Mallath MK.

J Glob Oncol. 2019 Jul;5:1-15. doi: 10.1200/JGO.19.00048.


Socio-economic patterning of expenditures on 'out-of-home' food and non-alcoholic beverages by product and place of purchase in Britain.

Cornelsen L, Berger N, Cummins S, Smith RD.

Soc Sci Med. 2019 Aug;235:112361. doi: 10.1016/j.socscimed.2019.112361. Epub 2019 Jun 15.


Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples.

Dou M, Tsai CF, Piehowski PD, Wang Y, Fillmore TL, Zhao R, Moore RJ, Zhang P, Qian WJ, Smith RD, Liu T, Kelly RT, Shi T, Zhu Y.

Anal Chem. 2019 Aug 6;91(15):9707-9715. doi: 10.1021/acs.analchem.9b01248. Epub 2019 Jul 9.


Structural and functional role of anions in electrochemical water oxidation probed by arsenate incorporation into cobalt-oxide materials.

Villalobos J, González-Flores D, Klingan K, Chernev P, Kubella P, Urcuyo R, Pasquini C, Mohammadi MR, Smith RDL, Montero ML, Dau H.

Phys Chem Chem Phys. 2019 Jun 21;21(23):12485-12493. doi: 10.1039/c9cp01754b. Epub 2019 May 30.


Updates to Binding MOAD (Mother of All Databases): Polypharmacology Tools and Their Utility in Drug Repurposing.

Smith RD, Clark JJ, Ahmed A, Orban ZJ, Dunbar JB Jr, Carlson HA.

J Mol Biol. 2019 Jun 14;431(13):2423-2433. doi: 10.1016/j.jmb.2019.05.024. Epub 2019 May 22.


Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry.

Zheng X, Smith FB, Aly NA, Cai J, Smith RD, Patterson AD, Baker ES.

Anal Bioanal Chem. 2019 Jul;411(19):4673-4682. doi: 10.1007/s00216-019-01869-0. Epub 2019 May 16.


A Targeted Mass Spectrometric Assay for Reliable Sensitive Hepcidin Quantification.

Moghieb A, Tesfay L, Nie S, Gritsenko M, Fillmore TL, Jacobs JM, Smith RD, Torti FM, Torti SV, Shi T, Ansong C.

Sci Rep. 2019 May 13;9(1):7264. doi: 10.1038/s41598-019-43756-9.


Coronary artery bypass confers intermediate-term survival benefit over percutaneous coronary intervention with new-generation stents in real-world patients with multivessel coronary artery disease, including left main disease: a retrospective analysis of 6383 patients.

Panoulas VF, Ilsley CJ, Kalogeras K, Khan H, Monteagudo Vela M, Dalby M, Kabir T, Smith RD, Mason M, Grocott-Mason R, Cummings I, Lüscher TF, Raja SG.

Eur J Cardiothorac Surg. 2019 Nov 1;56(5):911-918. doi: 10.1093/ejcts/ezz142.


Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.

Vasaikar S, Huang C, Wang X, Petyuk VA, Savage SR, Wen B, Dou Y, Zhang Y, Shi Z, Arshad OA, Gritsenko MA, Zimmerman LJ, McDermott JE, Clauss TR, Moore RJ, Zhao R, Monroe ME, Wang YT, Chambers MC, Slebos RJC, Lau KS, Mo Q, Ding L, Ellis M, Thiagarajan M, Kinsinger CR, Rodriguez H, Smith RD, Rodland KD, Liebler DC, Liu T, Zhang B; Clinical Proteomic Tumor Analysis Consortium.

Cell. 2019 May 2;177(4):1035-1049.e19. doi: 10.1016/j.cell.2019.03.030. Epub 2019 Apr 25.


Fat tax or thin subsidy? How price increases and decreases affect the energy and nutrient content of food and beverage purchases in Great Britain.

Cornelsen L, Mazzocchi M, Smith RD.

Soc Sci Med. 2019 Jun;230:318-327. doi: 10.1016/j.socscimed.2019.04.003. Epub 2019 Apr 6. No abstract available.


Palm oil and dietary change: Application of an integrated macroeconomic, environmental, demographic, and health modelling framework for Thailand.

Jensen HT, Keogh-Brown MR, Shankar B, Aekplakorn W, Basu S, Cuevas S, Dangour AD, Gheewala SH, Green R, Joy EJM, Rojroongwasinkul N, Thaiprasert N, Smith RD.

Food Policy. 2019 Feb;83:92-103. doi: 10.1016/j.foodpol.2018.12.003.


Commentary: The Tulane University-Ochsner Clinic Foundation Neurosurgery Program: 75 Years of History, Including the Program's Rebirth After Katrina.

Kahn L, Smith RD, Dumont AS, Bui CJ, Valle-Giler EP.

Neurosurgery. 2019 Jun 1;84(6):E437-E442. doi: 10.1093/neuros/nyz081.


Interhemispheric Paracallosal Approach for an Arteriovenous Malformation of the Atrium: A Novel Technique.

Valle-Giler EP, Gouveia EE, Smith RD.

Ochsner J. 2019 Spring;19(1):54-58. doi: 10.31486/toj.18.0112.


Hospital contribution to variation in rates of vaginal birth after cesarean.

Triebwasser JE, Kamdar NS, Langen ES, Moniz MH, Basu T, Syrjamaki J, Thomason AC, Smith RD, Morgan DM.

J Perinatol. 2019 Jul;39(7):904-910. doi: 10.1038/s41372-019-0373-2. Epub 2019 Apr 5.


The challenge of antimicrobial resistance: What economics can contribute.

Roope LSJ, Smith RD, Pouwels KB, Buchanan J, Abel L, Eibich P, Butler CC, Tan PS, Walker AS, Robotham JV, Wordsworth S.

Science. 2019 Apr 5;364(6435). pii: eaau4679. doi: 10.1126/science.aau4679. Review.


Proximity-dependent proteomics of the Chlamydia trachomatis inclusion membrane reveals functional interactions with endoplasmic reticulum exit sites.

Dickinson MS, Anderson LN, Webb-Robertson BM, Hansen JR, Smith RD, Wright AT, Hybiske K.

PLoS Pathog. 2019 Apr 3;15(4):e1007698. doi: 10.1371/journal.ppat.1007698. eCollection 2019 Apr.


Multimodal in vivo brain electrophysiology with integrated glass microelectrodes.

Hunt DL, Lai C, Smith RD, Lee AK, Harris TD, Barbic M.

Nat Biomed Eng. 2019 Sep;3(9):741-753. doi: 10.1038/s41551-019-0373-8. Epub 2019 Apr 1.


A likelihood ratio test for changes in homeolog expression bias.

Smith RD, Kinser TJ, Smith GDC, Puzey JR.

BMC Bioinformatics. 2019 Mar 20;20(1):149. doi: 10.1186/s12859-019-2709-5.


Long-term outcomes of deep brain stimulation in severe Parkinson's disease utilizing UPDRS III and modified Hoehn and Yahr as a severity scale.

Kahn L, Mathkour M, Lee SX, Gouveia EE, Hanna JA, Garces J, Scullen T, McCormack E, Riffle J, Glynn R, Houghton D, Lea G, Biro EE, Bui CJ, Sulaiman OA, Smith RD.

Clin Neurol Neurosurg. 2019 Apr;179:67-73. doi: 10.1016/j.clineuro.2019.02.018. Epub 2019 Feb 21.


Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells.

Yi L, Tsai CF, Dirice E, Swensen AC, Chen J, Shi T, Gritsenko MA, Chu RK, Piehowski PD, Smith RD, Rodland KD, Atkinson MA, Mathews CE, Kulkarni RN, Liu T, Qian WJ.

Anal Chem. 2019 May 7;91(9):5794-5801. doi: 10.1021/acs.analchem.9b00024. Epub 2019 Mar 15.


Author Correction: Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Apr;51(4):765. doi: 10.1038/s41588-019-0380-4.


Dual Polarity Ion Confinement and Mobility Separations.

Attah IK, Garimella SVB, Webb IK, Nagy G, Norheim RV, Schimelfenig CE, Ibrahim YM, Smith RD.

J Am Soc Mass Spectrom. 2019 Jun;30(6):967-976. doi: 10.1007/s13361-019-02138-1. Epub 2019 Mar 4.


Glomerular filtrate proteins in acute cardiorenal syndrome.

Wakasaki R, Matsushita K, Golgotiu K, Anderson S, Eiwaz MB, Orton DJ, Han SJ, Lee HT, Smith RD, Rodland KD, Piehowski PD, Hutchens MP.

JCI Insight. 2019 Feb 21;4(4). pii: 122130. doi: 10.1172/jci.insight.122130. eCollection 2019 Feb 21.


Separation of β-Amyloid Tryptic Peptide Species with Isomerized and Racemized l-Aspartic Residues with Ion Mobility in Structures for Lossless Ion Manipulations.

Nagy G, Kedia K, Attah IK, Garimella SVB, Ibrahim YM, Petyuk VA, Smith RD.

Anal Chem. 2019 Apr 2;91(7):4374-4380. doi: 10.1021/acs.analchem.8b04696. Epub 2019 Mar 12.


Plasma lipidome reveals critical illness and recovery from human Ebola virus disease.

Kyle JE, Burnum-Johnson KE, Wendler JP, Eisfeld AJ, Halfmann PJ, Watanabe T, Sahr F, Smith RD, Kawaoka Y, Waters KM, Metz TO.

Proc Natl Acad Sci U S A. 2019 Feb 26;116(9):3919-3928. doi: 10.1073/pnas.1815356116. Epub 2019 Feb 11.


Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Mar;51(3):541-547. doi: 10.1038/s41588-019-0356-4. Epub 2019 Feb 25. Erratum in: Nat Genet. 2019 Apr;51(4):765.


Global Disease Outbreaks Associated with the 2015-2016 El Niño Event.

Anyamba A, Chretien JP, Britch SC, Soebiyanto RP, Small JL, Jepsen R, Forshey BM, Sanchez JL, Smith RD, Harris R, Tucker CJ, Karesh WB, Linthicum KJ.

Sci Rep. 2019 Feb 13;9(1):1930. doi: 10.1038/s41598-018-38034-z.


Inherent versus induced protein flexibility: Comparisons within and between apo and holo structures.

Clark JJ, Benson ML, Smith RD, Carlson HA.

PLoS Comput Biol. 2019 Jan 30;15(1):e1006705. doi: 10.1371/journal.pcbi.1006705. eCollection 2019 Jan.


H/D Isotope Effects Reveal Factors Controlling Catalytic Activity in Co-Based Oxides for Water Oxidation.

Pasquini C, Zaharieva I, González-Flores D, Chernev P, Mohammadi MR, Guidoni L, Smith RDL, Dau H.

J Am Chem Soc. 2019 Feb 20;141(7):2938-2948. doi: 10.1021/jacs.8b10002. Epub 2019 Feb 6.


Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells.

Zhang P, Gaffrey MJ, Zhu Y, Chrisler WB, Fillmore TL, Yi L, Nicora CD, Zhang T, Wu H, Jacobs J, Tang K, Kagan J, Srivastava S, Rodland KD, Qian WJ, Smith RD, Liu T, Wiley HS, Shi T.

Anal Chem. 2019 Jan 15;91(2):1441-1451. doi: 10.1021/acs.analchem.8b04258. Epub 2018 Dec 28.

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