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TMT labeling facilitates RPLC-MS analysis of hydrophilic phosphopeptides.

Tsai CF, Smith J, Krajewski K, Zhao R, Moghieb AM, Nicora CD, Xiong X, Moore RJ, Liu T, Smith RD, Jacobs JM, Rajagopal S, Shi T.

Anal Chem. 2019 Aug 16. doi: 10.1021/acs.analchem.9b01814. [Epub ahead of print]


Psychotherapists in danger: The ethics of responding to client threats, stalking, and harassment.

Erickson Cornish JA, Smith RD, Holmberg JR, Dunn TM, Siderius LL.

Psychotherapy (Chic). 2019 Aug 15. doi: 10.1037/pst0000248. [Epub ahead of print]


The spread of radiology in India from 1941 to 1956.

Smith RD.

Indian J Cancer. 2019 Jul-Sep;56(3):285-286. doi: 10.4103/0019-509X.263039.


Folding and Assembly of Short α, β, γ-Hybrid Peptides: Minor Variations in Sequence and Drastic Differences in Higher-Level Structures.

Zhang Y, Zhong Y, Connor AL, Miller DP, Cao R, Shen J, Song B, Baker ES, Tang Q, Pulavarti SVSRK, Liu R, Wang Q, Lu ZL, Szyperski T, Zeng H, Li X, Smith RD, Zurek E, Zhu J, Gong B.

J Am Chem Soc. 2019 Aug 5. doi: 10.1021/jacs.9b06094. [Epub ahead of print]


History of the Growing Burden of Cancer in India: From Antiquity to the 21st Century.

Smith RD, Mallath MK.

J Glob Oncol. 2019 Jul;5:1-15. doi: 10.1200/JGO.19.00048.


Socio-economic patterning of expenditures on 'out-of-home' food and non-alcoholic beverages by product and place of purchase in Britain.

Cornelsen L, Berger N, Cummins S, Smith RD.

Soc Sci Med. 2019 Aug;235:112361. doi: 10.1016/j.socscimed.2019.112361. Epub 2019 Jun 15.


Automated Nanoflow Two-Dimensional Reversed-Phase Liquid Chromatography System Enables In-Depth Proteome and Phosphoproteome Profiling of Nanoscale Samples.

Dou M, Tsai CF, Piehowski PD, Wang Y, Fillmore TL, Zhao R, Moore RJ, Zhang P, Qian WJ, Smith RD, Liu T, Kelly RT, Shi T, Zhu Y.

Anal Chem. 2019 Aug 6;91(15):9707-9715. doi: 10.1021/acs.analchem.9b01248. Epub 2019 Jul 9.


Structural and functional role of anions in electrochemical water oxidation probed by arsenate incorporation into cobalt-oxide materials.

Villalobos J, González-Flores D, Klingan K, Chernev P, Kubella P, Urcuyo R, Pasquini C, Mohammadi MR, Smith RDL, Montero ML, Dau H.

Phys Chem Chem Phys. 2019 Jun 21;21(23):12485-12493. doi: 10.1039/c9cp01754b. Epub 2019 May 30.


Updates to Binding MOAD (Mother of All Databases): Polypharmacology Tools and Their Utility in Drug Repurposing.

Smith RD, Clark JJ, Ahmed A, Orban ZJ, Dunbar JB Jr, Carlson HA.

J Mol Biol. 2019 Jun 14;431(13):2423-2433. doi: 10.1016/j.jmb.2019.05.024. Epub 2019 May 22.


Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry.

Zheng X, Smith FB, Aly NA, Cai J, Smith RD, Patterson AD, Baker ES.

Anal Bioanal Chem. 2019 Jul;411(19):4673-4682. doi: 10.1007/s00216-019-01869-0. Epub 2019 May 16.


A Targeted Mass Spectrometric Assay for Reliable Sensitive Hepcidin Quantification.

Moghieb A, Tesfay L, Nie S, Gritsenko M, Fillmore TL, Jacobs JM, Smith RD, Torti FM, Torti SV, Shi T, Ansong C.

Sci Rep. 2019 May 13;9(1):7264. doi: 10.1038/s41598-019-43756-9.


Coronary artery bypass confers intermediate-term survival benefit over percutaneous coronary intervention with new-generation stents in real-world patients with multivessel coronary artery disease, including left main disease: a retrospective analysis of 6383 patients.

Panoulas VF, Ilsley CJ, Kalogeras K, Khan H, Monteagudo Vela M, Dalby M, Kabir T, Smith RD, Mason M, Grocott-Mason R, Cummings I, Lüscher TF, Raja SG.

Eur J Cardiothorac Surg. 2019 May 11. pii: ezz142. doi: 10.1093/ejcts/ezz142. [Epub ahead of print]


Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities.

Vasaikar S, Huang C, Wang X, Petyuk VA, Savage SR, Wen B, Dou Y, Zhang Y, Shi Z, Arshad OA, Gritsenko MA, Zimmerman LJ, McDermott JE, Clauss TR, Moore RJ, Zhao R, Monroe ME, Wang YT, Chambers MC, Slebos RJC, Lau KS, Mo Q, Ding L, Ellis M, Thiagarajan M, Kinsinger CR, Rodriguez H, Smith RD, Rodland KD, Liebler DC, Liu T, Zhang B; Clinical Proteomic Tumor Analysis Consortium.

Cell. 2019 May 2;177(4):1035-1049.e19. doi: 10.1016/j.cell.2019.03.030. Epub 2019 Apr 25.


Fat tax or thin subsidy? How price increases and decreases affect the energy and nutrient content of food and beverage purchases in Great Britain.

Cornelsen L, Mazzocchi M, Smith RD.

Soc Sci Med. 2019 Jun;230:318-327. doi: 10.1016/j.socscimed.2019.04.003. Epub 2019 Apr 6. No abstract available.


Palm oil and dietary change: Application of an integrated macroeconomic, environmental, demographic, and health modelling framework for Thailand.

Jensen HT, Keogh-Brown MR, Shankar B, Aekplakorn W, Basu S, Cuevas S, Dangour AD, Gheewala SH, Green R, Joy EJM, Rojroongwasinkul N, Thaiprasert N, Smith RD.

Food Policy. 2019 Feb;83:92-103. doi: 10.1016/j.foodpol.2018.12.003.


Commentary: The Tulane University-Ochsner Clinic Foundation Neurosurgery Program: 75 Years of History, Including the Program's Rebirth After Katrina.

Kahn L, Smith RD, Dumont AS, Bui CJ, Valle-Giler EP.

Neurosurgery. 2019 Jun 1;84(6):E437-E442. doi: 10.1093/neuros/nyz081.


Interhemispheric Paracallosal Approach for an Arteriovenous Malformation of the Atrium: A Novel Technique.

Valle-Giler EP, Gouveia EE, Smith RD.

Ochsner J. 2019 Spring;19(1):54-58. doi: 10.31486/toj.18.0112.


Hospital contribution to variation in rates of vaginal birth after cesarean.

Triebwasser JE, Kamdar NS, Langen ES, Moniz MH, Basu T, Syrjamaki J, Thomason AC, Smith RD, Morgan DM.

J Perinatol. 2019 Jul;39(7):904-910. doi: 10.1038/s41372-019-0373-2. Epub 2019 Apr 5.


The challenge of antimicrobial resistance: What economics can contribute.

Roope LSJ, Smith RD, Pouwels KB, Buchanan J, Abel L, Eibich P, Butler CC, Tan PS, Walker AS, Robotham JV, Wordsworth S.

Science. 2019 Apr 5;364(6435). pii: eaau4679. doi: 10.1126/science.aau4679. Review.


Proximity-dependent proteomics of the Chlamydia trachomatis inclusion membrane reveals functional interactions with endoplasmic reticulum exit sites.

Dickinson MS, Anderson LN, Webb-Robertson BM, Hansen JR, Smith RD, Wright AT, Hybiske K.

PLoS Pathog. 2019 Apr 3;15(4):e1007698. doi: 10.1371/journal.ppat.1007698. eCollection 2019 Apr.


Multimodal in vivo brain electrophysiology with integrated glass microelectrodes.

Hunt DL, Lai C, Smith RD, Lee AK, Harris TD, Barbic M.

Nat Biomed Eng. 2019 Apr 1. doi: 10.1038/s41551-019-0373-8. [Epub ahead of print]


A likelihood ratio test for changes in homeolog expression bias.

Smith RD, Kinser TJ, Smith GDC, Puzey JR.

BMC Bioinformatics. 2019 Mar 20;20(1):149. doi: 10.1186/s12859-019-2709-5.


Long-term outcomes of deep brain stimulation in severe Parkinson's disease utilizing UPDRS III and modified Hoehn and Yahr as a severity scale.

Kahn L, Mathkour M, Lee SX, Gouveia EE, Hanna JA, Garces J, Scullen T, McCormack E, Riffle J, Glynn R, Houghton D, Lea G, Biro EE, Bui CJ, Sulaiman OA, Smith RD.

Clin Neurol Neurosurg. 2019 Apr;179:67-73. doi: 10.1016/j.clineuro.2019.02.018. Epub 2019 Feb 21.


Boosting to Amplify Signal with Isobaric Labeling (BASIL) Strategy for Comprehensive Quantitative Phosphoproteomic Characterization of Small Populations of Cells.

Yi L, Tsai CF, Dirice E, Swensen AC, Chen J, Shi T, Gritsenko MA, Chu RK, Piehowski PD, Smith RD, Rodland KD, Atkinson MA, Mathews CE, Kulkarni RN, Liu T, Qian WJ.

Anal Chem. 2019 May 7;91(9):5794-5801. doi: 10.1021/acs.analchem.9b00024. Epub 2019 Mar 15.


Author Correction: Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Apr;51(4):765. doi: 10.1038/s41588-019-0380-4.


Dual Polarity Ion Confinement and Mobility Separations.

Attah IK, Garimella SVB, Webb IK, Nagy G, Norheim RV, Schimelfenig CE, Ibrahim YM, Smith RD.

J Am Soc Mass Spectrom. 2019 Jun;30(6):967-976. doi: 10.1007/s13361-019-02138-1. Epub 2019 Mar 4.


Glomerular filtrate proteins in acute cardiorenal syndrome.

Wakasaki R, Matsushita K, Golgotiu K, Anderson S, Eiwaz MB, Orton DJ, Han SJ, Lee HT, Smith RD, Rodland KD, Piehowski PD, Hutchens MP.

JCI Insight. 2019 Feb 21;4(4). pii: 122130. doi: 10.1172/jci.insight.122130. eCollection 2019 Feb 21.


Separation of β-Amyloid Tryptic Peptide Species with Isomerized and Racemized l-Aspartic Residues with Ion Mobility in Structures for Lossless Ion Manipulations.

Nagy G, Kedia K, Attah IK, Garimella SVB, Ibrahim YM, Petyuk VA, Smith RD.

Anal Chem. 2019 Apr 2;91(7):4374-4380. doi: 10.1021/acs.analchem.8b04696. Epub 2019 Mar 12.


Plasma lipidome reveals critical illness and recovery from human Ebola virus disease.

Kyle JE, Burnum-Johnson KE, Wendler JP, Eisfeld AJ, Halfmann PJ, Watanabe T, Sahr F, Smith RD, Kawaoka Y, Waters KM, Metz TO.

Proc Natl Acad Sci U S A. 2019 Feb 26;116(9):3919-3928. doi: 10.1073/pnas.1815356116. Epub 2019 Feb 11.


Origin and evolution of the octoploid strawberry genome.

Edger PP, Poorten TJ, VanBuren R, Hardigan MA, Colle M, McKain MR, Smith RD, Teresi SJ, Nelson ADL, Wai CM, Alger EI, Bird KA, Yocca AE, Pumplin N, Ou S, Ben-Zvi G, Brodt A, Baruch K, Swale T, Shiue L, Acharya CB, Cole GS, Mower JP, Childs KL, Jiang N, Lyons E, Freeling M, Puzey JR, Knapp SJ.

Nat Genet. 2019 Mar;51(3):541-547. doi: 10.1038/s41588-019-0356-4. Epub 2019 Feb 25. Erratum in: Nat Genet. 2019 Apr;51(4):765.


Global Disease Outbreaks Associated with the 2015-2016 El Niño Event.

Anyamba A, Chretien JP, Britch SC, Soebiyanto RP, Small JL, Jepsen R, Forshey BM, Sanchez JL, Smith RD, Harris R, Tucker CJ, Karesh WB, Linthicum KJ.

Sci Rep. 2019 Feb 13;9(1):1930. doi: 10.1038/s41598-018-38034-z.


Inherent versus induced protein flexibility: Comparisons within and between apo and holo structures.

Clark JJ, Benson ML, Smith RD, Carlson HA.

PLoS Comput Biol. 2019 Jan 30;15(1):e1006705. doi: 10.1371/journal.pcbi.1006705. eCollection 2019 Jan.


H/D Isotope Effects Reveal Factors Controlling Catalytic Activity in Co-Based Oxides for Water Oxidation.

Pasquini C, Zaharieva I, González-Flores D, Chernev P, Mohammadi MR, Guidoni L, Smith RDL, Dau H.

J Am Chem Soc. 2019 Feb 20;141(7):2938-2948. doi: 10.1021/jacs.8b10002. Epub 2019 Feb 6.


Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells.

Zhang P, Gaffrey MJ, Zhu Y, Chrisler WB, Fillmore TL, Yi L, Nicora CD, Zhang T, Wu H, Jacobs J, Tang K, Kagan J, Srivastava S, Rodland KD, Qian WJ, Smith RD, Liu T, Wiley HS, Shi T.

Anal Chem. 2019 Jan 15;91(2):1441-1451. doi: 10.1021/acs.analchem.8b04258. Epub 2018 Dec 28.


Towards resolving the spatial metabolome with unambiguous molecular annotations in complex biological systems by coupling mass spectrometry imaging with structures for lossless ion manipulations.

Nagy G, Veličković D, Chu RK, Carrell AA, Weston DJ, Ibrahim YM, Anderton CR, Smith RD.

Chem Commun (Camb). 2019 Jan 2;55(3):306-309. doi: 10.1039/c8cc07482h.


Design methodology for a simulator of a robotic surgical system.

Julian DL, Smith RD, Tanaka ADS, Dubin A.

J Robot Surg. 2019 Aug;13(4):567-574. doi: 10.1007/s11701-018-0897-z. Epub 2018 Nov 30.


Shifting global health governance towards the sustainable development goals.

Marten R, Kadandale S, Nordström A, Smith RD.

Bull World Health Organ. 2018 Dec 1;96(12):798-798A. doi: 10.2471/BLT.18.209668. No abstract available.


Nanowell-mediated multidimensional separations combining nanoLC with SLIM IM-MS for rapid, high-peak-capacity proteomic analyses.

Dou M, Chouinard CD, Zhu Y, Nagy G, Liyu AV, Ibrahim YM, Smith RD, Kelly RT.

Anal Bioanal Chem. 2019 Aug;411(21):5363-5372. doi: 10.1007/s00216-018-1452-5. Epub 2018 Nov 5.


Micropuncture of Bowman's Space in Mice Facilitated by 2 Photon Microscopy.

Matsushita K, Golgotiu K, Orton DJ, Smith RD, Rodland KD, Piehowski PD, Hutchens MP.

J Vis Exp. 2018 Oct 11;(140). doi: 10.3791/58206.


Preconditioning in the Rhesus Macaque Induces a Proteomic Signature Following Cerebral Ischemia that Is Associated with Neuroprotection.

Stevens SL, Liu T, Bahjat FR, Petyuk VA, Schepmoes AA, Sontag RL, Gritsenko MA, Wu C, Wang S, Shukla AK, Jacobs JM, Smith RD, Rodland KD, Alexander West G, Kohama SG, Glynn C, Stenzel-Poore MP.

Transl Stroke Res. 2019 Aug;10(4):440-448. doi: 10.1007/s12975-018-0670-7. Epub 2018 Oct 19.


Identification and Evaluation of Self-Report Physical Activity Instruments in Adults With Osteoarthritis: A Systematic Review.

Smith RD, Dziedzic KS, Quicke JG, Holden MA, McHugh GA, Healey EL.

Arthritis Care Res (Hoboken). 2019 Feb;71(2):237-251. doi: 10.1002/acr.23787.


Utilizing ion mobility spectrometry and mass spectrometry for the analysis of polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polybrominated diphenyl ethers and their metabolites.

Zheng X, Dupuis KT, Aly NA, Zhou Y, Smith FB, Tang K, Smith RD, Baker ES.

Anal Chim Acta. 2018 Dec 11;1037:265-273. doi: 10.1016/j.aca.2018.02.054. Epub 2018 Mar 2.


Facile carrier-assisted targeted mass spectrometric approach for proteomic analysis of low numbers of mammalian cells.

Shi T, Gaffrey MJ, Fillmore TL, Nicora CD, Yi L, Zhang P, Shukla AK, Wiley HS, Rodland KD, Liu T, Smith RD, Qian WJ.

Commun Biol. 2018 Aug 6;1:103. doi: 10.1038/s42003-018-0107-6. eCollection 2018.


Comparison of elderly and young patient populations treated with deep brain stimulation for Parkinson's disease: long-term outcomes with up to 7 years of follow-up.

Hanna JA, Scullen T, Kahn L, Mathkour M, Gouveia EE, Garces J, Evans LM, Lea G, Houghton DJ, Biro E, Bui CJ, Sulaiman OA, Smith RD.

J Neurosurg. 2018 Sep 1:1-6. doi: 10.3171/2018.4.JNS171909. [Epub ahead of print]


Unraveling the isomeric heterogeneity of glycans: ion mobility separations in structures for lossless ion manipulations.

Nagy G, Attah IK, Garimella SVB, Tang K, Ibrahim YM, Baker ES, Smith RD.

Chem Commun (Camb). 2018 Oct 25;54(83):11701-11704. doi: 10.1039/c8cc06966b. Epub 2018 Sep 28.


Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis.

Kedia K, Wendler JP, Baker ES, Burnum-Johnson KE, Jarsberg LG, Stratton KG, Wright AT, Piehowski PD, Gritsenko MA, Lewinsohn DM, Sigal GB, Weiner MH, Smith RD, Jacobs JM, Nahid P.

Tuberculosis (Edinb). 2018 Sep;112:52-61. doi: 10.1016/ Epub 2018 Jul 18.


Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations.

Nagy G, Chouinard CD, Attah IK, Webb IK, Garimella SVB, Ibrahim YM, Baker ES, Smith RD.

Electrophoresis. 2018 Dec;39(24):3148-3155. doi: 10.1002/elps.201800294. Epub 2018 Sep 17.


Cost-effectiveness of internet-based training for primary care clinicians on antibiotic prescribing for acute respiratory tract infections in Europe.

Oppong R, Smith RD, Little P, Verheij T, Butler CC, Goossens H, Coenen S, Jowett S, Roberts TE, Achana F, Stuart B, Coast J.

J Antimicrob Chemother. 2018 Nov 1;73(11):3189-3198. doi: 10.1093/jac/dky309.


The human brainome: network analysis identifies HSPA2 as a novel Alzheimer’s disease target.

Petyuk VA, Chang R, Ramirez-Restrepo M, Beckmann ND, Henrion MYR, Piehowski PD, Zhu K, Wang S, Clarke J, Huentelman MJ, Xie F, Andreev V, Engel A, Guettoche T, Navarro L, De Jager P, Schneider JA, Morris CM, McKeith IG, Perry RH, Lovestone S, Woltjer RL, Beach TG, Sue LI, Serrano GE, Lieberman AP, Albin RL, Ferrer I, Mash DC, Hulette CM, Ervin JF, Reiman EM, Hardy JA, Bennett DA, Schadt E, Smith RD, Myers AJ.

Brain. 2018 Sep 1;141(9):2721-2739. doi: 10.1093/brain/awy215.


Improved Sensitivity and Separations for Phosphopeptides using Online Liquid Chromotography Coupled with Structures for Lossless Ion Manipulations Ion Mobility-Mass Spectrometry.

Chouinard CD, Nagy G, Webb IK, Shi T, Baker ES, Prost SA, Liu T, Ibrahim YM, Smith RD.

Anal Chem. 2018 Sep 18;90(18):10889-10896. doi: 10.1021/acs.analchem.8b02397. Epub 2018 Aug 29.

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