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snapMRF: GPU-accelerated magnetic resonance fingerprinting dictionary generation and matching using extended phase graphs.

Wang D, Ostenson J, Smith DS.

Magn Reson Imaging. 2019 Nov 15. pii: S0730-725X(19)30380-7. doi: 10.1016/j.mri.2019.11.015. [Epub ahead of print]


Capsule Commentary on Liu et al., Trends in Self-reported Prediabetes and Metformin Use in the United States: NHANES 2005-2014.

Richey EA, Smith DS.

J Gen Intern Med. 2020 Jan;35(1):403. doi: 10.1007/s11606-019-05497-3. No abstract available.


Dynamic MR image reconstruction based on total generalized variation and low-rank decomposition.

Wang D, Smith DS, Yang X.

Magn Reson Med. 2019 Nov 7. doi: 10.1002/mrm.28064. [Epub ahead of print]


The Effects of Natural Suspended Solids on Copper Toxicity to the Cardinal Tetra in Amazonian River Waters.

Crémazy A, Wood CM, Smith DS, Val AL.

Environ Toxicol Chem. 2019 Dec;38(12):2708-2718. doi: 10.1002/etc.4586. Epub 2019 Nov 16.


Diagnosis of Chagasic Encephalitis by Sequencing of 28S rRNA Gene.

Multani A, Meer A, Smith DS, Kheraj MN, Plowey ED, Blackburn BG.

Emerg Infect Dis. 2019 Jul;25(7):1370-1372. doi: 10.3201/eid2507.180285.


Comparative genomics of chytrid fungi reveal insights into the obligate biotrophic and pathogenic lifestyle of Synchytrium endobioticum.

van de Vossenberg BTLH, Warris S, Nguyen HDT, van Gent-Pelzer MPE, Joly DL, van de Geest HC, Bonants PJM, Smith DS, Lévesque CA, van der Lee TAJ.

Sci Rep. 2019 Jun 17;9(1):8672. doi: 10.1038/s41598-019-45128-9.


Deacetylation of Miro1 by HDAC6 blocks mitochondrial transport and mediates axon growth inhibition.

Kalinski AL, Kar AN, Craver J, Tosolini AP, Sleigh JN, Lee SJ, Hawthorne A, Brito-Vargas P, Miller-Randolph S, Passino R, Shi L, Wong VSC, Picci C, Smith DS, Willis DE, Havton LA, Schiavo G, Giger RJ, Langley B, Twiss JL.

J Cell Biol. 2019 Jun 3;218(6):1871-1890. doi: 10.1083/jcb.201702187. Epub 2019 May 8.


Safe Travel Preparation for HIV-Infected Patients.

Mariano D, Smith DS.

Curr Infect Dis Rep. 2019 Mar 20;21(4):15. doi: 10.1007/s11908-019-0667-8. Review.


Does dissolved organic carbon from Amazon black water (Brazil) help a native species, the tambaqui Colossoma macropomum to maintain ionic homeostasis in acidic water?

Sadauskas-Henrique H, Wood CM, Souza-Bastos LR, Duarte RM, Smith DS, Val AL.

J Fish Biol. 2019 Apr;94(4):595-605. doi: 10.1111/jfb.13943.


Regulation of in vivo dynein force production by CDK5 and 14-3-3ε and KIAA0528.

Chapman DE, Reddy BJN, Huy B, Bovyn MJ, Cruz SJS, Al-Shammari ZM, Han H, Wang W, Smith DS, Gross SP.

Nat Commun. 2019 Jan 16;10(1):228. doi: 10.1038/s41467-018-08110-z.


Identification of Novel Protein Targets of Dimethyl Fumarate Modification in Neurons and Astrocytes Reveals Actions Independent of Nrf2 Stabilization.

Piroli GG, Manuel AM, Patel T, Walla MD, Shi L, Lanci SA, Wang J, Galloway A, Ortinski PI, Smith DS, Frizzell N.

Mol Cell Proteomics. 2019 Mar;18(3):504-519. doi: 10.1074/mcp.RA118.000922. Epub 2018 Dec 26.


Williams Syndrome and Music: A Systematic Integrative Review.

Thakur D, Martens MA, Smith DS, Roth E.

Front Psychol. 2018 Nov 14;9:2203. doi: 10.3389/fpsyg.2018.02203. eCollection 2018.


Trajectory optimized NUFFT: Faster non-Cartesian MRI reconstruction through prior knowledge and parallel architectures.

Smith DS, Sengupta S, Smith SA, Brian Welch E.

Magn Reson Med. 2019 Mar;81(3):2064-2071. doi: 10.1002/mrm.27497. Epub 2018 Oct 17.


Reducing risk of Clostridium difficile infection and overall use of antibiotic in the outpatient treatment of urinary tract infection.

Ge IY, Fevrier HB, Conell C, Kheraj MN, Flint AC, Smith DS, Herrinton LJ.

Ther Adv Urol. 2018 Jun 22;10(10):283-293. doi: 10.1177/1756287218783871. eCollection 2018 Oct.


Chronic effects of lead exposure on topsmelt fish (Atherinops affinis): Influence of salinity, organism age, and relative sensitivity to other marine species.

Reynolds EJ, Smith DS, Chowdhury MJ, Hoang TC.

Environ Toxicol Chem. 2018 Oct;37(10):2705-2713. doi: 10.1002/etc.4241. Epub 2018 Aug 31.


Maternal Apolipoprotein B100 Serum Levels are Diminished in Pregnancies with Intrauterine Growth Restriction and Differentiate from Controls.

Wölter M, Okai CA, Smith DS, Ruß M, Rath W, Pecks U, Borchers CH, Glocker MO.

Proteomics Clin Appl. 2018 Nov;12(6):e1800017. doi: 10.1002/prca.201800017. Epub 2018 Jul 23.


Physiological protective action of dissolved organic carbon on ion regulation and nitrogenous waste excretion of zebrafish (Danio rerio) exposed to low pH in ion-poor water.

Duarte RM, Wood CM, Val AL, Smith DS.

J Comp Physiol B. 2018 Sep;188(5):793-807. doi: 10.1007/s00360-018-1169-y. Epub 2018 Jun 11.


The role of dissolved organic carbon concentration and composition on nickel toxicity to early life-stages of the blue mussel Mytilus edulis and purple sea urchin Strongylocentrotus purpuratus.

Blewett TA, Dow EM, Wood CM, McGeer JC, Smith DS.

Ecotoxicol Environ Saf. 2018 Sep 30;160:162-170. doi: 10.1016/j.ecoenv.2018.05.029. Epub 2018 May 26.


Axonal mRNA transport and translation at a glance.

Sahoo PK, Smith DS, Perrone-Bizzozero N, Twiss JL.

J Cell Sci. 2018 Apr 13;131(8). pii: jcs196808. doi: 10.1242/jcs.196808. Review.


Role of DNA methyltransferases in regulation of human ribosomal RNA gene transcription.

Majumder S, Ghoshal K, Datta J, Smith DS, Bai S, Jacob ST.

J Biol Chem. 2018 Mar 9;293(10):3591. doi: 10.1074/jbc.W118.002433. No abstract available.


Metal (Pb, Cd, and Zn) Binding to Diverse Organic Matter Samples and Implications for Speciation Modeling.

Chen W, Guéguen C, Smith DS, Galceran J, Puy J, Companys E.

Environ Sci Technol. 2018 Apr 3;52(7):4163-4172. doi: 10.1021/acs.est.7b05302. Epub 2018 Mar 13.


An Essential Postdevelopmental Role for Lis1 in Mice.

Hines TJ, Gao X, Sahu S, Lange MM, Turner JR, Twiss JL, Smith DS.

eNeuro. 2018 Feb 2;5(1). pii: ENEURO.0350-17.2018. doi: 10.1523/ENEURO.0350-17.2018. eCollection 2018 Jan-Feb.


Differential Proteomics for Distinguishing Ischemic Stroke from Controls: a Pilot Study of the SpecTRA Project.

Penn AM, Saly V, Trivedi A, Lesperance ML, Votova K, Jackson AM, Croteau NS, Balshaw RF, Bibok MB, Smith DS, Lam KK, Morrison J, Lu L, Coutts SB, Borchers CH.

Transl Stroke Res. 2018 Dec;9(6):590-599. doi: 10.1007/s12975-018-0609-z. Epub 2018 Jan 24.


Testing the Underlying Chemical Principles of the Biotic Ligand Model (BLM) to Marine Copper Systems: Measuring Copper Speciation Using Fluorescence Quenching.

Tait TN, McGeer JC, Smith DS.

Bull Environ Contam Toxicol. 2018 Jan;100(1):76-81. doi: 10.1007/s00128-017-2262-8. Epub 2017 Dec 23.


Corrigendum to "Nickel toxicity to cardinal tetra (Paracheirodon axelrodi) differs seasonally and among the black, white and clear river waters of the Amazon Basin" [Water Res. 123 (2017) 21-29].

Holland A, Wood CM, Smith DS, Correia TG, Val AL.

Water Res. 2017 Dec 1;126:531. doi: 10.1016/j.watres.2017.10.027. No abstract available.


Experimentally derived acute and chronic copper Biotic Ligand Models for rainbow trout.

Crémazy A, Wood CM, Ng TY, Smith DS, Chowdhury MJ.

Aquat Toxicol. 2017 Nov;192:224-240. doi: 10.1016/j.aquatox.2017.07.013. Epub 2017 Jul 24.


Quantitative Evaluation of Temporal Regularizers in Compressed Sensing Dynamic Contrast Enhanced MRI of the Breast.

Wang D, Arlinghaus LR, Yankeelov TE, Yang X, Smith DS.

Int J Biomed Imaging. 2017;2017:7835749. doi: 10.1155/2017/7835749. Epub 2017 Aug 28.


Defining the Architecture of the Core Machinery for the Assembly of Fe-S Clusters in Human Mitochondria.

Gakh O, Ranatunga W, Galeano BK, Smith DS 4th, Thompson JR, Isaya G.

Methods Enzymol. 2017;595:107-160. doi: 10.1016/bs.mie.2017.07.003. Epub 2017 Aug 18.


Can local adaptation explain varying patterns of herbivory tolerance in a recently introduced woody plant in North America?

Long RW, Bush SE, Grady KC, Smith DS, Potts DL, D'Antonio CM, Dudley TL, Fehlberg SD, Gaskin JF, Glenn EP, Hultine KR.

Conserv Physiol. 2017 Mar 28;5(1):cox016. doi: 10.1093/conphys/cox016. eCollection 2017.


Gender Norm Salience Across Middle Schools: Contextual Variations in Associations Between Gender Typicality and Socioemotional Distress.

Smith DS, Schacter HL, Enders C, Juvonen J.

J Youth Adolesc. 2018 May;47(5):947-960. doi: 10.1007/s10964-017-0732-2. Epub 2017 Aug 23.


Dynamic Imaging of the Eye, Optic Nerve, and Extraocular Muscles With Golden Angle Radial MRI.

Sengupta S, Smith DS, Smith AK, Welch EB, Smith SA.

Invest Ophthalmol Vis Sci. 2017 Aug 1;58(10):4390–4398. doi: 10.1167/iovs.17-21861. Erratum in: Invest Ophthalmol Vis Sci. 2017 Sep 1;58(11):4799.


Do I fit in? Psychosocial ramifications of low gender typicality in early adolescence.

Smith DS, Juvonen J.

J Adolesc. 2017 Oct;60:161-170. doi: 10.1016/j.adolescence.2017.07.014. Epub 2017 Aug 1.


More Poop, More Precision: Improving Epidemiologic Surveillance of Soil-Transmitted Helminths with Multiple Fecal Sampling using the Kato-Katz Technique.

Liu C, Lu L, Zhang L, Bai Y, Medina A, Rozelle S, Smith DS, Zhou C, Zang W.

Am J Trop Med Hyg. 2017 Sep;97(3):870-875. doi: 10.4269/ajtmh.16-0728. Epub 2017 Jul 19.


Nickel toxicity to cardinal tetra (Paracheirodon axelrodi) differs seasonally and among the black, white and clear river waters of the Amazon basin.

Holland A, Wood CM, Smith DS, Correia TG, Val AL.

Water Res. 2017 Oct 15;123:21-29. doi: 10.1016/j.watres.2017.06.044. Epub 2017 Jun 17. Erratum in: Water Res. 2017 Dec 1;126:531.


Multiplexed MRM-Based Protein Quantitation Using Two Different Stable Isotope-Labeled Peptide Isotopologues for Calibration.

LeBlanc A, Michaud SA, Percy AJ, Hardie DB, Yang J, Sinclair NJ, Proudfoot JI, Pistawka A, Smith DS, Borchers CH.

J Proteome Res. 2017 Jul 7;16(7):2527-2536. doi: 10.1021/acs.jproteome.7b00094. Epub 2017 Jun 2.


Identification of commonly expressed exoproteins and proteolytic cleavage events by proteomic mining of clinically relevant UK isolates of Staphylococcus aureus.

Smith DS, Siggins MK, Gierula M, Pichon B, Turner CE, Lynskey NN, Mosavie M, Kearns AM, Edwards RJ, Sriskandan S.

Microb Genom. 2016 Feb 23;2(2):e000049. doi: 10.1099/mgen.0.000049. eCollection 2016 Feb.


Splenic Abscess After Acute Pyelonephritis.

Lee DH, Smith DS.

Am J Med. 2017 Mar;130(3):e109-e110. doi: 10.1016/j.amjmed.2016.10.011. No abstract available.


Effect of Deworming on Indices of Health, Cognition, and Education Among Schoolchildren in Rural China: A Cluster-Randomized Controlled Trial.

Liu C, Lu L, Zhang L, Luo R, Sylvia S, Medina A, Rozelle S, Smith DS, Chen Y, Zhu T.

Am J Trop Med Hyg. 2017 Jun;96(6):1478-1489. doi: 10.4269/ajtmh.16-0354.


Mapping pediatric injuries to target prevention, education, and outreach.

Stewart CL, Acker SN, Pyle L, Smith DS, Bensard DD, Moulton SL.

J Pediatr Surg. 2017 Aug;52(8):1287-1291. doi: 10.1016/j.jpedsurg.2016.12.023. Epub 2016 Dec 30.


Insulin signaling regulates a functional interaction between adenomatous polyposis coli and cytoplasmic dynein.

Gao FJ, Shi L, Hines T, Hebbar S, Neufeld KL, Smith DS.

Mol Biol Cell. 2017 Mar 1;28(5):587-599. doi: 10.1091/mbc.E16-07-0555. Epub 2017 Jan 5.


Measuring Biotic Ligand Model (BLM) Parameters in Vitro: Copper and Silver Binding to Rainbow Trout Gill Cells as Cultured Epithelia or in Suspension.

Smith DS, Cooper CA, Wood CM.

Environ Sci Technol. 2017 Feb 7;51(3):1733-1741. doi: 10.1021/acs.est.6b04823. Epub 2017 Jan 10.


Investigating copper toxicity in the tropical fish cardinal tetra (Paracheirodon axelrodi) in natural Amazonian waters: Measurements, modeling, and reality.

Crémazy A, Wood CM, Smith DS, Ferreira MS, Johannsson OE, Giacomin M, Val AL.

Aquat Toxicol. 2016 Nov;180:353-363. doi: 10.1016/j.aquatox.2016.10.011. Epub 2016 Oct 17.


Wave Scheduling: Efficient Precepting in the Outpatient Setting.

Lehner V, Smith DS.

J Physician Assist Educ. 2016 Dec;27(4):200-202. doi: 10.1097/JPA.0000000000000094. No abstract available.


A novel anthropomorphic flow phantom for the quantitative evaluation of prostate DCE-MRI acquisition techniques.

Knight SP, Browne JE, Meaney JF, Smith DS, Fagan AJ.

Phys Med Biol. 2016 Oct 21;61(20):7466-7483. Epub 2016 Oct 3.


PeptideTracker: A knowledge base for collecting and storing information on protein concentrations in biological tissues.

Mohammed Y, Bhowmick P, Smith DS, Domanski D, Jackson AM, Michaud SA, Malchow S, Percy AJ, Chambers AG, Palmer A, Zhang S, Sickmann A, Borchers CH.

Proteomics. 2017 Apr;17(7). doi: 10.1002/pmic.201600210. Epub 2016 Dec 14. No abstract available.


Q148N, a Novel Integrase Inhibitor Resistance Mutation Associated with Low-Level Reduction in Elvitegravir Susceptibility.

Varghese V, Pinsky BA, Smith DS, Klein D, Shafer RW.

AIDS Res Hum Retroviruses. 2016 Jul;32(7):702-4. doi: 10.1089/AID.2016.0038. Epub 2016 Apr 19.


Development of Polymorphic Microsatellite Loci for Potato Wart from Next-Generation Sequence Data.

Gagnon MC, van der Lee TA, Bonants PJ, Smith DS, Li X, Lévesque CA, Bilodeau GJ.

Phytopathology. 2016 Jun;106(6):636-44. doi: 10.1094/PHYTO-12-15-0317-R. Epub 2016 Apr 8.


A Plasmid-Transposon Hybrid Mutagenesis System Effective in a Broad Range of Enterobacteria.

Monson R, Smith DS, Matilla MA, Roberts K, Richardson E, Drew A, Williamson N, Ramsay J, Welch M, Salmond GP.

Front Microbiol. 2015 Dec 22;6:1442. doi: 10.3389/fmicb.2015.01442. eCollection 2015.


Mechanisms of Nickel Toxicity in the Highly Sensitive Embryos of the Sea Urchin Evechinus chloroticus, and the Modifying Effects of Natural Organic Matter.

Blewett TA, Smith DS, Wood CM, Glover CN.

Environ Sci Technol. 2016 Feb 2;50(3):1595-603. doi: 10.1021/acs.est.5b05626. Epub 2016 Jan 13.


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