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A reversible fluorescent probe for monitoring Ag(I) ions.

Lim Z, Smith DG, Kolanowski JL, Mattison RL, Knowles JC, Baek SY, Chrzanowski W, New EJ.

J R Soc Interface. 2018 Jul;15(144). pii: 20180346. doi: 10.1098/rsif.2018.0346.


Immunomodulation of Host Chitinase 3-Like 1 During a Mammary Pathogenic Escherichia coli Infection.

Breyne K, Steenbrugge J, Demeyere K, Lee CG, Elias JA, Petzl W, Smith DGE, Germon P, Meyer E.

Front Immunol. 2018 May 28;9:1143. doi: 10.3389/fimmu.2018.01143. eCollection 2018.


Psi4NumPy: An Interactive Quantum Chemistry Programming Environment for Reference Implementations and Rapid Development.

Smith DGA, Burns LA, Sirianni DA, Nascimento DR, Kumar A, James AM, Schriber JB, Zhang T, Zhang B, Abbott AS, Berquist EJ, Lechner MH, Cunha LA, Heide AG, Waldrop JM, Takeshita TY, Alenaizan A, Neuhauser D, King RA, Simmonett AC, Turney JM, Schaefer HF, Evangelista FA, DePrince AE 3rd, Crawford TD, Patkowski K, Sherrill CD.

J Chem Theory Comput. 2018 Jul 10;14(7):3504-3511. doi: 10.1021/acs.jctc.8b00286. Epub 2018 Jun 11.


Mitochondrial DNA Analysis of Mazahua and Otomi Indigenous Populations from Estado de México Suggests a Distant Common Ancestry.

González-Oliver A, Garfias-Morales E, Smith DG, Quinto-Sánchez M.

Hum Biol. 2017 Jul;89(3):195-216.


First-order symmetry-adapted perturbation theory for multiplet splittings.

Patkowski K, Żuchowski PS, Smith DGA.

J Chem Phys. 2018 Apr 28;148(16):164110. doi: 10.1063/1.5021891.


The Absence of Indoleamine 2,3-Dioxygenase Inhibits Retinal Capillary Degeneration in Diabetic Mice.

Nahomi RB, Sampathkumar S, Myers AM, Elghazi L, Smith DG, Tang J, Lee CA, Kern TS, Nagaraj RH, Fort PE.

Invest Ophthalmol Vis Sci. 2018 Apr 1;59(5):2042-2053. doi: 10.1167/iovs.17-22702.


Postgenomics Characterization of an Essential Genetic Determinant of Mammary Pathogenic Escherichia coli.

Blum SE, Goldstone RJ, Connolly JPR, Répérant-Ferter M, Germon P, Inglis NF, Krifucks O, Mathur S, Manson E, Mclean K, Rainard P, Roe AJ, Leitner G, Smith DGE.

MBio. 2018 Apr 3;9(2). pii: e00423-18. doi: 10.1128/mBio.00423-18.


Rapid and robust analytical protocol for E. coli STEC bacteria subspecies differentiation using whole cell MALDI mass spectrometry.

Mclean K, Palarea-Albaladejo J, Currie CG, Imrie LHJ, Manson EDT, Fraser-Pitt D, Wright F, Alexander CJ, Pollock KGJ, Allison L, Hanson M, Smith DGE.

Talanta. 2018 May 15;182:164-170. doi: 10.1016/j.talanta.2018.01.055. Epub 2018 Feb 20.


CORR Insights®: Intrawound Antibiotic Powder Decreases Frequency of Deep Infection and Severity of Heterotopic Ossification in Combat Lower Extremity Amputations.

Dougherty PJ, Smith DG.

Clin Orthop Relat Res. 2018 Feb 21. doi: 10.1007/s11999.0000000000000237. [Epub ahead of print] No abstract available.


A Posterolateral Approach to the Scapula for Evacuation of a Subscapular Abscess: A Case Report.

Christman-Skieller C, McIntyre LK, Plevin R, Friedrich JB, Smith DG.

JBJS Case Connect. 2017 Jul-Sep;7(3):e57. doi: 10.2106/JBJS.CC.16.00241.


Host species adaptation of TLR5 signalling and flagellin recognition.

Tahoun A, Jensen K, Corripio-Miyar Y, McAteer S, Smith DGE, McNeilly TN, Gally DL, Glass EJ.

Sci Rep. 2017 Dec 15;7(1):17677. doi: 10.1038/s41598-017-17935-5.


The bile salt sodium taurocholate induces Campylobacter jejuni outer membrane vesicle production and increases OMV-associated proteolytic activity.

Elmi A, Dorey A, Watson E, Jagatia H, Inglis NF, Gundogdu O, Bajaj-Elliott M, Wren BW, Smith DGE, Dorrell N.

Cell Microbiol. 2018 Mar;20(3). doi: 10.1111/cmi.12814. Epub 2017 Dec 28.


Dorsal raphé nucleus glucocorticoid receptors inhibit tph2 gene expression in male C57BL/6J mice.

Vincent MY, Donner NC, Smith DG, Lowry CA, Jacobson L.

Neurosci Lett. 2018 Feb 5;665:48-53. doi: 10.1016/j.neulet.2017.11.041. Epub 2017 Nov 22.


Deltamides and Croconamides: Expanding the Range of Dual H-bond Donors for Selective Anion Recognition.

Zwicker VE, Yuen KKY, Smith DG, Ho J, Qin L, Turner P, Jolliffe KA.

Chemistry. 2018 Jan 24;24(5):1140-1150. doi: 10.1002/chem.201704388. Epub 2017 Dec 15.


The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions.

Burns LA, Faver JC, Zheng Z, Marshall MS, Smith DGA, Vanommeslaeghe K, MacKerell AD Jr, Merz KM Jr, Sherrill CD.

J Chem Phys. 2017 Oct 28;147(16):161727. doi: 10.1063/1.5001028.


Genetic analysis of samples from wild populations opens new perspectives on hybridization between long-tailed (Macaca fascicularis) and rhesus macaques (Macaca mulatta).

Bunlungsup S, Kanthaswamy S, Oldt RF, Smith DG, Houghton P, Hamada Y, Malaivijitnond S.

Am J Primatol. 2017 Dec;79(12). doi: 10.1002/ajp.22726. Epub 2017 Nov 2.


MALDIrppa: quality control and robust analysis for mass spectrometry data.

Palarea-Albaladejo J, Mclean K, Wright F, Smith DGE.

Bioinformatics. 2018 Feb 1;34(3):522-523. doi: 10.1093/bioinformatics/btx628.


A coordination polymer for the site-specific integration of semiconducting sequences into DNA-based materials.

Al-Mahamad LLG, El-Zubir O, Smith DG, Horrocks BR, Houlton A.

Nat Commun. 2017 Sep 28;8(1):720. doi: 10.1038/s41467-017-00852-6.


Preimmunization with a heat-killed preparation of Mycobacterium vaccae enhances fear extinction in the fear-potentiated startle paradigm.

Fox JH, Hassell JE Jr, Siebler PH, Arnold MR, Lamb AK, Smith DG, Day HEW, Smith TM, Simmerman EM, Outzen AA, Holmes KS, Brazell CJ, Lowry CA.

Brain Behav Immun. 2017 Nov;66:70-84. doi: 10.1016/j.bbi.2017.08.014. Epub 2017 Sep 6.


Fluorescent sensing arrays for cations and anions.

Smith DG, Topolnicki IL, Zwicker VE, Jolliffe KA, New EJ.

Analyst. 2017 Oct 7;142(19):3549-3563. doi: 10.1039/c7an01200d. Epub 2017 Aug 30.


Mycobacterium kansasii Isolated from Tuberculinpositive Rhesus Macaques (Macaca mulatta) in the Absence of Disease.

Shipley ST, Johnson DK, Roodgar M, Smith DG, Montgomery CA, Lloyd SM, Higgins JA, Kriel EH, Klein HJ, Porter WP, Nazareno JB, Houghton PW, Panda A, DeTolla LJ.

Comp Med. 2017 Aug 1;67(4):368-375.


Genetic Structure of First Nation Communities in the Pacific Northwest.

Hughes CE, Rogers MP, Owings AC, Petzelt B, Mitchell J, Harry H, Williams T, Goldberg D, Labuda D, Smith DG, Cybulski JS, Malhi RS.

Hum Biol. 2016 Oct;88(4):251-263.


A carbon tetrachloride-free synthesis of N-phenyltrifluoroacetimidoyl chloride.

Smith DGM, Williams SJ.

Carbohydr Res. 2017 Oct 10;450:10-11. doi: 10.1016/j.carres.2017.08.004. Epub 2017 Aug 10.


ABO blood group phenotype frequency estimation using molecular phenotyping in rhesus and cynomolgus macaques.

Kanthaswamy S, Ng J, Oldt RF, Valdivia L, Houghton P, Smith DG.

HLA. 2017 Nov;90(5):295-299. doi: 10.1111/tan.13118. Epub 2017 Sep 6.


A population genomics approach to exploiting the accessory 'resistome' of Escherichia coli.

Goldstone RJ, Smith DGE.

Microb Genom. 2017 Apr 6;3(4):e000108. doi: 10.1099/mgen.0.000108. eCollection 2017 Apr.


Genetic Characterization of a Captive Colony of Pigtailed Macaques (Macaca nemestrina).

Zhang X, Kanthaswamy S, Trask JS, Ng J, Oldt RF, Mankowski JL, Adams RJ, Smith DG.

J Am Assoc Lab Anim Sci. 2017 Jul 1;56(4):390-395.


The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study.

Hemmings SMJ, Malan-Müller S, van den Heuvel LL, Demmitt BA, Stanislawski MA, Smith DG, Bohr AD, Stamper CE, Hyde ER, Morton JT, Marotz CA, Siebler PH, Braspenning M, Van Criekinge W, Hoisington AJ, Brenner LA, Postolache TT, McQueen MB, Krauter KS, Knight R, Seedat S, Lowry CA.

Psychosom Med. 2017 Oct;79(8):936-946. doi: 10.1097/PSY.0000000000000512.


Replicable in vivo physiological and behavioral phenotypes of the Shank3B null mutant mouse model of autism.

Dhamne SC, Silverman JL, Super CE, Lammers SHT, Hameed MQ, Modi ME, Copping NA, Pride MC, Smith DG, Rotenberg A, Crawley JN, Sahin M.

Mol Autism. 2017 Jun 15;8:26. doi: 10.1186/s13229-017-0142-z. eCollection 2017.


Whole-body hyperthermia and a subthreshold dose of citalopram act synergistically to induce antidepressant-like behavioral responses in adolescent rats.

Hale MW, Lukkes JL, Dady KF, Kelly KJ, Paul ED, Smith DG, Raison CL, Lowry CA.

Prog Neuropsychopharmacol Biol Psychiatry. 2017 Oct 3;79(Pt B):162-168. doi: 10.1016/j.pnpbp.2017.06.006. Epub 2017 Jun 12.


Local immunization impacts the response of dairy cows to Escherichia coli mastitis.

Herry V, Gitton C, Tabouret G, Répérant M, Forge L, Tasca C, Gilbert FB, Guitton E, Barc C, Staub C, Smith DGE, Germon P, Foucras G, Rainard P.

Sci Rep. 2017 Jun 13;7(1):3441. doi: 10.1038/s41598-017-03724-7.


Psi4 1.1: An Open-Source Electronic Structure Program Emphasizing Automation, Advanced Libraries, and Interoperability.

Parrish RM, Burns LA, Smith DGA, Simmonett AC, DePrince AE 3rd, Hohenstein EG, Bozkaya U, Sokolov AY, Di Remigio R, Richard RM, Gonthier JF, James AM, McAlexander HR, Kumar A, Saitow M, Wang X, Pritchard BP, Verma P, Schaefer HF 3rd, Patkowski K, King RA, Valeev EF, Evangelista FA, Turney JM, Crawford TD, Sherrill CD.

J Chem Theory Comput. 2017 Jul 11;13(7):3185-3197. doi: 10.1021/acs.jctc.7b00174. Epub 2017 Jun 6.


Genome-wide fitness analyses of the foodborne pathogen Campylobacter jejuni in in vitro and in vivo models.

de Vries SP, Gupta S, Baig A, Wright E, Wedley A, Jensen AN, Lora LL, Humphrey S, Skovgård H, Macleod K, Pont E, Wolanska DP, L'Heureux J, Mobegi FM, Smith DGE, Everest P, Zomer A, Williams N, Wigley P, Humphrey T, Maskell DJ, Grant AJ.

Sci Rep. 2017 Apr 28;7(1):1251. doi: 10.1038/s41598-017-01133-4.


Analysis of Campylobacter jejuni infection in the gnotobiotic piglet and genome-wide identification of bacterial factors required for infection.

de Vries SP, Linn A, Macleod K, MacCallum A, Hardy SP, Douce G, Watson E, Dagleish MP, Thompson H, Stevenson A, Kennedy D, Baig A, Coward C, Maskell DJ, Smith DG, Grant AJ, Everest P.

Sci Rep. 2017 Mar 10;7:44283. doi: 10.1038/srep44283.


Flanking region variation of ForenSeq™ DNA Signature Prep Kit STR and SNP loci in Yavapai Native Americans.

Wendt FR, King JL, Novroski NMM, Churchill JD, Ng J, Oldt RF, McCulloh KL, Weise JA, Smith DG, Kanthaswamy S, Budowle B.

Forensic Sci Int Genet. 2017 May;28:146-154. doi: 10.1016/j.fsigen.2017.02.014. Epub 2017 Feb 27.


Effects of naltrexone are influenced by childhood adversity during negative emotional processing in addiction recovery.

Savulich G, Riccelli R, Passamonti L, Correia M, Deakin JF, Elliott R, Flechais RS, Lingford-Hughes AR, McGonigle J, Murphy A, Nutt DJ, Orban C, Paterson LM, Reed LJ, Smith DG, Suckling J, Tait R, Taylor EM, Sahakian BJ, Robbins TW, Ersche KD.

Transl Psychiatry. 2017 Mar 7;7(3):e1054. doi: 10.1038/tp.2017.34.


Ancestry, Plasmodium cynomolgi prevalence and rhesus macaque admixture in cynomolgus macaques (Macaca fascicularis) bred for export in Chinese breeding farms.

Zhang X, Meng Y, Houghton P, Liu M, Kanthaswamy S, Oldt R, Ng J, Trask JS, Huang R, Singh B, Du H, Smith DG.

J Med Primatol. 2017 Apr;46(2):31-41. doi: 10.1111/jmp.12256. Epub 2017 Mar 7.


Managers' Compensation in a Mixed Ownership Industry: Evidence from Nursing Homes.

Huang SS, Hirth RA, Smith DG.

Front Public Health. 2016 Dec 26;4:283. doi: 10.3389/fpubh.2016.00283. eCollection 2016.


Quantitation in the regioselectivity of acylation of glycosyl diglycerides: total synthesis of a Streptococcus pneumoniae α-glucosyl diglyceride.

Richardson MB, Smith DG, Williams SJ.

Chem Commun (Camb). 2017 Jan 17;53(6):1100-1103. doi: 10.1039/c6cc09584d.


The population genomics of rhesus macaques (Macaca mulatta) based on whole-genome sequences.

Xue C, Raveendran M, Harris RA, Fawcett GL, Liu X, White S, Dahdouli M, Rio Deiros D, Below JE, Salerno W, Cox L, Fan G, Ferguson B, Horvath J, Johnson Z, Kanthaswamy S, Kubisch HM, Liu D, Platt M, Smith DG, Sun B, Vallender EJ, Wang F, Wiseman RW, Chen R, Muzny DM, Gibbs RA, Yu F, Rogers J.

Genome Res. 2016 Dec;26(12):1651-1662. Epub 2016 Oct 17.


The Microbiome of the Built Environment and Human Behavior: Implications for Emotional Health and Well-Being in Postmodern Western Societies.

Stamper CE, Hoisington AJ, Gomez OM, Halweg-Edwards AL, Smith DG, Bates KL, Kinney KA, Postolache TT, Brenner LA, Rook GA, Lowry CA.

Int Rev Neurobiol. 2016;131:289-323. doi: 10.1016/bs.irn.2016.07.006. Epub 2016 Sep 6. Review.


The ICCAM platform study: An experimental medicine platform for evaluating new drugs for relapse prevention in addiction. Part B: fMRI description.

McGonigle J, Murphy A, Paterson LM, Reed LJ, Nestor L, Nash J, Elliott R, Ersche KD, Flechais RS, Newbould R, Orban C, Smith DG, Taylor EM, Waldman AD, Robbins TW, Deakin JW, Nutt DJ, Lingford-Hughes AR, Suckling J; ICCAM Platform.

J Psychopharmacol. 2017 Jan;31(1):3-16. doi: 10.1177/0269881116668592. Epub 2016 Oct 4.


Phenotyping, Etiological Factors, and Biomarkers: Toward Precision Medicine in Autism Spectrum Disorders.


J Dev Behav Pediatr. 2016 Oct;37(8):659-73. doi: 10.1097/DBP.0000000000000351.


Data generated from three quantitative mass spectral methods for the analysis of trivalent influenza vaccine antigens are compared.

Smith DG, Gingras G, Aubin Y, Cyr TD.

Data Brief. 2016 Aug 25;9:169-76. doi: 10.1016/j.dib.2016.08.035. eCollection 2016 Dec.


A new species of elongate unpatterned moray eel of the genus Gymnothorax (Muraenidae: Muraeninae) from the Bay of Bengal.

Mohapatra A, Ray D, Smith DG, Mishra SS.

Zootaxa. 2016 Aug 16;4150(5):591-8. doi: 10.11646/zootaxa.4150.5.6.


Distribution and prevalence of malaria parasites among long-tailed macaques (Macaca fascicularis) in regional populations across Southeast Asia.

Zhang X, Kadir KA, Quintanilla-Zariñan LF, Villano J, Houghton P, Du H, Singh B, Smith DG.

Malar J. 2016 Sep 2;15(1):450. doi: 10.1186/s12936-016-1494-0.


Methodological and Design Considerations in Evaluating the Impact of Prevention Programs on Violence and Related Health Outcomes.

Massetti GM, Simon TR, Smith DG.

Prev Sci. 2016 Oct;17(7):779-84. doi: 10.1007/s11121-016-0704-x.


The Microbiota, Immunoregulation, and Mental Health: Implications for Public Health.

Lowry CA, Smith DG, Siebler PH, Schmidt D, Stamper CE, Hassell JE Jr, Yamashita PS, Fox JH, Reber SO, Brenner LA, Hoisington AJ, Postolache TT, Kinney KA, Marciani D, Hernandez M, Hemmings SM, Malan-Muller S, Wright KP, Knight R, Raison CL, Rook GA.

Curr Environ Health Rep. 2016 Sep;3(3):270-86. doi: 10.1007/s40572-016-0100-5. Review.


Genomic content typifying a prevalent clade of bovine mastitis-associated Escherichia coli.

Goldstone RJ, Harris S, Smith DG.

Sci Rep. 2016 Jul 20;6:30115. doi: 10.1038/srep30115.

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