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Metabolite Control of Translation by Conserved Peptide uORFs: The Ribosome as a Metabolite Multi-sensor.

van der Horst S, Filipovska T, Hanson J, Smeekens SCM.

Plant Physiol. 2019 Aug 26. pii: pp.00940.2019. doi: 10.1104/pp.19.00940. [Epub ahead of print] No abstract available.


Parenting quality in infancy and emotional eating in adolescence: Mediation through emotion suppression and alexithymia.

van Strien T, Beijers R, Smeekens S, Winkens LHH, Konttinen H.

Appetite. 2019 Oct 1;141:104339. doi: 10.1016/j.appet.2019.104339. Epub 2019 Jun 29.


A Genome-Wide Functional Genomics Approach Identifies Susceptibility Pathways to Fungal Bloodstream Infection in Humans.

Jaeger M, Matzaraki V, Aguirre-Gamboa R, Gresnigt MS, Chu X, Johnson MD, Oosting M, Smeekens SP, Withoff S, Jonkers I, Perfect JR, van de Veerdonk FL, Kullberg BJ, Joosten LAB, Li Y, Wijmenga C, Netea MG, Kumar V.

J Infect Dis. 2019 Jul 31;220(5):862-872. doi: 10.1093/infdis/jiz206.


Friends and foes: Neural correlates of prosocial decisions with peers in adolescence.

Schreuders E, Smeekens S, Cillessen AHN, Güroğlu B.

Neuropsychologia. 2019 Jun;129:153-163. doi: 10.1016/j.neuropsychologia.2019.03.004. Epub 2019 Mar 12.


Bullying the Brain? Longitudinal Links Between Childhood Peer Victimization, Cortisol, and Adolescent Brain Structure.

du Plessis MR, Smeekens S, Cillessen AHN, Whittle S, Güroǧlu B.

Front Psychol. 2019 Jan 11;9:2706. doi: 10.3389/fpsyg.2018.02706. eCollection 2018.


The fecal and mucosal microbiome in acute appendicitis patients: an observational study.

Peeters T, Penders J, Smeekens SP, Galazzo G, Houben B, Netea MG, Savelkoul PH, Gyssens IC.

Future Microbiol. 2019 Jan;14:111-127. doi: 10.2217/fmb-2018-0203. Epub 2019 Jan 21.


Novel pipeline identifies new upstream ORFs and non-AUG initiating main ORFs with conserved amino acid sequences in the 5' leader of mRNAs in Arabidopsis thaliana.

van der Horst S, Snel B, Hanson J, Smeekens S.

RNA. 2019 Mar;25(3):292-304. doi: 10.1261/rna.067983.118. Epub 2018 Dec 19.


The Inter-Relationship of Platelets with Interleukin-1β-Mediated Inflammation in Humans.

Tunjungputri RN, Li Y, de Groot PG, Dinarello CA, Smeekens SP, Jaeger M, Doppenberg-Oosting M, Cruijsen M, Lemmers H, Toenhake-Dijkstra H, Aguirre-Gamboa R, Kumar V, Wijmenga C, Joosten LAB, Netea MG, van der Ven A, de Mast Q.

Thromb Haemost. 2018 Dec;118(12):2112-2125. doi: 10.1055/s-0038-1675603. Epub 2018 Nov 19.


Duration of breastfeeding is associated with emotional eating through its effect on alexithymia in boys, but not girls.

van Strien T, Beijers R, Smeekens S, Winkens LHH.

Appetite. 2019 Jan 1;132:97-105. doi: 10.1016/j.appet.2018.10.006. Epub 2018 Oct 10.


Early-life and pubertal stress differentially modulate grey matter development in human adolescents.

Tyborowska A, Volman I, Niermann HCM, Pouwels JL, Smeekens S, Cillessen AHN, Toni I, Roelofs K.

Sci Rep. 2018 Jun 15;8(1):9201. doi: 10.1038/s41598-018-27439-5.


Integration of multi-omics data and deep phenotyping enables prediction of cytokine responses.

Bakker OB, Aguirre-Gamboa R, Sanna S, Oosting M, Smeekens SP, Jaeger M, Zorro M, Võsa U, Withoff S, Netea-Maier RT, Koenen HJPM, Joosten I, Xavier RJ, Franke L, Joosten LAB, Kumar V, Wijmenga C, Netea MG, Li Y.

Nat Immunol. 2018 Jul;19(7):776-786. doi: 10.1038/s41590-018-0121-3. Epub 2018 May 21.


Growing Azolla to produce sustainable protein feed: the effect of differing species and CO2 concentrations on biomass productivity and chemical composition.

Brouwer P, Schluepmann H, Nierop KG, Elderson J, Bijl PK, van der Meer I, de Visser W, Reichart GJ, Smeekens S, van der Werf A.

J Sci Food Agric. 2018 Sep;98(12):4759-4768. doi: 10.1002/jsfa.9016. Epub 2018 May 19.


Rewiring monocyte glucose metabolism via C-type lectin signaling protects against disseminated candidiasis.

Domínguez-Andrés J, Arts RJW, Ter Horst R, Gresnigt MS, Smeekens SP, Ratter JM, Lachmandas E, Boutens L, van de Veerdonk FL, Joosten LAB, Notebaart RA, Ardavín C, Netea MG.

PLoS Pathog. 2017 Sep 18;13(9):e1006632. doi: 10.1371/journal.ppat.1006632. eCollection 2017 Sep.


Gut microbiome in ADHD and its relation to neural reward anticipation.

Aarts E, Ederveen THA, Naaijen J, Zwiers MP, Boekhorst J, Timmerman HM, Smeekens SP, Netea MG, Buitelaar JK, Franke B, van Hijum SAFT, Arias Vasquez A.

PLoS One. 2017 Sep 1;12(9):e0183509. doi: 10.1371/journal.pone.0183509. eCollection 2017.


Drought resistance: Spraying for yield.

Smeekens S.

Nat Plants. 2017 Mar 3;3:17023. doi: 10.1038/nplants.2017.23. No abstract available.


Developmental Pathways to Preference and Popularity in Middle Childhood.

van den Berg YHM, Deutz MHF, Smeekens S, Cillessen AHN.

Child Dev. 2017 Sep;88(5):1629-1641. doi: 10.1111/cdev.12706. Epub 2017 Jan 4.


Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.

Schirmer M, Smeekens SP, Vlamakis H, Jaeger M, Oosting M, Franzosa EA, Horst RT, Jansen T, Jacobs L, Bonder MJ, Kurilshikov A, Fu J, Joosten LAB, Zhernakova A, Huttenhower C, Wijmenga C, Netea MG, Xavier RJ.

Cell. 2016 Dec 15;167(7):1897. doi: 10.1016/j.cell.2016.11.046. No abstract available.


Differential Effects of Environmental and Genetic Factors on T and B Cell Immune Traits.

Aguirre-Gamboa R, Joosten I, Urbano PCM, van der Molen RG, van Rijssen E, van Cranenbroek B, Oosting M, Smeekens S, Jaeger M, Zorro M, Withoff S, van Herwaarden AE, Sweep FCGJ, Netea RT, Swertz MA, Franke L, Xavier RJ, Joosten LAB, Netea MG, Wijmenga C, Kumar V, Li Y, Koenen HJPM.

Cell Rep. 2016 Nov 22;17(9):2474-2487. doi: 10.1016/j.celrep.2016.10.053. Epub 2016 Nov 3.


Functional and Genomic Architecture of Borrelia burgdorferi-Induced Cytokine Responses in Humans.

Oosting M, Kerstholt M, Ter Horst R, Li Y, Deelen P, Smeekens S, Jaeger M, Lachmandas E, Vrijmoeth H, Lupse M, Flonta M, Cramer RA, Kullberg BJ, Kumar V, Xavier R, Wijmenga C, Netea MG, Joosten LA.

Cell Host Microbe. 2016 Dec 14;20(6):822-833. doi: 10.1016/j.chom.2016.10.006. Epub 2016 Nov 3.


Linking the Human Gut Microbiome to Inflammatory Cytokine Production Capacity.

Schirmer M, Smeekens SP, Vlamakis H, Jaeger M, Oosting M, Franzosa EA, Ter Horst R, Jansen T, Jacobs L, Bonder MJ, Kurilshikov A, Fu J, Joosten LAB, Zhernakova A, Huttenhower C, Wijmenga C, Netea MG, Xavier RJ.

Cell. 2016 Nov 3;167(4):1125-1136.e8. doi: 10.1016/j.cell.2016.10.020. Erratum in: Cell. 2016 Dec 15;167(7):1897. Cell. 2016 Dec 15;167(7):1897.


Host and Environmental Factors Influencing Individual Human Cytokine Responses.

Ter Horst R, Jaeger M, Smeekens SP, Oosting M, Swertz MA, Li Y, Kumar V, Diavatopoulos DA, Jansen AFM, Lemmers H, Toenhake-Dijkstra H, van Herwaarden AE, Janssen M, van der Molen RG, Joosten I, Sweep FCGJ, Smit JW, Netea-Maier RT, Koenders MMJF, Xavier RJ, van der Meer JWM, Dinarello CA, Pavelka N, Wijmenga C, Notebaart RA, Joosten LAB, Netea MG.

Cell. 2016 Nov 3;167(4):1111-1124.e13. doi: 10.1016/j.cell.2016.10.018.


A Functional Genomics Approach to Understand Variation in Cytokine Production in Humans.

Li Y, Oosting M, Smeekens SP, Jaeger M, Aguirre-Gamboa R, Le KTT, Deelen P, Ricaño-Ponce I, Schoffelen T, Jansen AFM, Swertz MA, Withoff S, van de Vosse E, van Deuren M, van de Veerdonk F, Zhernakova A, van der Meer JWM, Xavier RJ, Franke L, Joosten LAB, Wijmenga C, Kumar V, Netea MG.

Cell. 2016 Nov 3;167(4):1099-1110.e14. doi: 10.1016/j.cell.2016.10.017.


The effect of host genetics on the gut microbiome.

Bonder MJ, Kurilshikov A, Tigchelaar EF, Mujagic Z, Imhann F, Vila AV, Deelen P, Vatanen T, Schirmer M, Smeekens SP, Zhernakova DV, Jankipersadsing SA, Jaeger M, Oosting M, Cenit MC, Masclee AA, Swertz MA, Li Y, Kumar V, Joosten L, Harmsen H, Weersma RK, Franke L, Hofker MH, Xavier RJ, Jonkers D, Netea MG, Wijmenga C, Fu J, Zhernakova A.

Nat Genet. 2016 Nov;48(11):1407-1412. doi: 10.1038/ng.3663. Epub 2016 Oct 3.


Corrigendum: Inter-individual variability and genetic influences on cytokine responses to bacteria and fungi.

Li Y, Oosting M, Deelen P, Ricaño-Ponce I, Smeekens S, Jaeger M, Matzaraki V, Swertz MA, Xavier RJ, Franke L, Wijmenga C, Joosten LA, Kumar V, Netea MG.

Nat Med. 2016 Oct 6;22(10):1192. doi: 10.1038/nm1016-1192b. No abstract available.


Understanding human immune function using the resources from the Human Functional Genomics Project.

Netea MG, Joosten LA, Li Y, Kumar V, Oosting M, Smeekens S, Jaeger M, Ter Horst R, Schirmer M, Vlamakis H, Notebaart R, Pavelka N, Aguirre-Gamboa RR, Swertz MA, Tunjungputri RN, van de Heijden W, Franzosa EA, Ng A, Graham D, Lassen K, Schraa K, Netea-Maier R, Smit J, de Mast Q, van de Veerdonk F, Kullberg BJ, Tack C, van de Munckhof I, Rutten J, van der Graaf J, Franke L, Hofker M, Jonkers I, Platteel M, Maatman A, Fu J, Zhernakova A, van der Meer JW, Dinarello CA, van der Ven A, Huttenhouwer C, Koenen H, Joosten I, Xavier RJ, Wijmenga C.

Nat Med. 2016 Aug 4;22(8):831-3. doi: 10.1038/nm.4140. No abstract available.


Inter-individual variability and genetic influences on cytokine responses to bacteria and fungi.

Li Y, Oosting M, Deelen P, Ricaño-Ponce I, Smeekens S, Jaeger M, Matzaraki V, Swertz MA, Xavier RJ, Franke L, Wijmenga C, Joosten LA, Kumar V, Netea MG.

Nat Med. 2016 Aug;22(8):952-60. doi: 10.1038/nm.4139. Epub 2016 Jul 4. Erratum in: Nat Med. 2016 Oct 6;22(10 ):1192.


Testosterone during Puberty Shifts Emotional Control from Pulvinar to Anterior Prefrontal Cortex.

Tyborowska A, Volman I, Smeekens S, Toni I, Roelofs K.

J Neurosci. 2016 Jun 8;36(23):6156-64. doi: 10.1523/JNEUROSCI.3874-15.2016.


An Omics Perspective on Candida Infections: Toward Next-Generation Diagnosis and Therapy.

Smeekens SP, van de Veerdonk FL, Netea MG.

Front Microbiol. 2016 Feb 16;7:154. doi: 10.3389/fmicb.2016.00154. eCollection 2016. Review.


Infant attachment predicts bodily freezing in adolescence: evidence from a prospective longitudinal study.

Niermann HC, Ly V, Smeekens S, Figner B, Riksen-Walraven JM, Roelofs K.

Front Behav Neurosci. 2015 Oct 12;9:263. doi: 10.3389/fnbeh.2015.00263. eCollection 2015.


From Leaf to Kernel: Trehalose-6-Phosphate Signaling Moves Carbon in the Field.

Smeekens S.

Plant Physiol. 2015 Oct;169(2):912-3. doi: 10.1104/pp.15.01177. No abstract available.


Gain-of-function STAT1 mutations impair STAT3 activity in patients with chronic mucocutaneous candidiasis (CMC).

Zheng J, van de Veerdonk FL, Crossland KL, Smeekens SP, Chan CM, Al Shehri T, Abinun M, Gennery AR, Mann J, Lendrem DW, Netea MG, Rowan AD, Lilic D.

Eur J Immunol. 2015 Oct;45(10):2834-46. doi: 10.1002/eji.201445344. Epub 2015 Sep 1.


Proteomic LC-MS analysis of Arabidopsis cytosolic ribosomes: Identification of ribosomal protein paralogs and re-annotation of the ribosomal protein genes.

Hummel M, Dobrenel T, Cordewener JJ, Davanture M, Meyer C, Smeekens SJ, Bailey-Serres J, America TA, Hanson J.

J Proteomics. 2015 Oct 14;128:436-49. doi: 10.1016/j.jprot.2015.07.004. Epub 2015 Jul 29.


The RIG-I-like helicase receptor MDA5 (IFIH1) is involved in the host defense against Candida infections.

Jaeger M, van der Lee R, Cheng SC, Johnson MD, Kumar V, Ng A, Plantinga TS, Smeekens SP, Oosting M, Wang X, Barchet W, Fitzgerald K, Joosten LAB, Perfect JR, Wijmenga C, van de Veerdonk FL, Huynen MA, Xavier RJ, Kullberg BJ, Netea MG.

Eur J Clin Microbiol Infect Dis. 2015 May;34(5):963-974. doi: 10.1007/s10096-014-2309-2. Epub 2015 Jan 13.


An anti-inflammatory property of Candida albicans β-glucan: Induction of high levels of interleukin-1 receptor antagonist via a Dectin-1/CR3 independent mechanism.

Smeekens SP, Gresnigt MS, Becker KL, Cheng SC, Netea SA, Jacobs L, Jansen T, van de Veerdonk FL, Williams DL, Joosten LA, Dinarello CA, Netea MG.

Cytokine. 2015 Feb;71(2):215-22. doi: 10.1016/j.cyto.2014.10.013. Epub 2014 Nov 20.


Increased sucrose levels mediate selective mRNA translation in Arabidopsis.

Gamm M, Peviani A, Honsel A, Snel B, Smeekens S, Hanson J.

BMC Plant Biol. 2014 Nov 18;14:306. doi: 10.1186/s12870-014-0306-3.


Immunochip SNP array identifies novel genetic variants conferring susceptibility to candidaemia.

Kumar V, Cheng SC, Johnson MD, Smeekens SP, Wojtowicz A, Giamarellos-Bourboulis E, Karjalainen J, Franke L, Withoff S, Plantinga TS, van de Veerdonk FL, van der Meer JWM, Joosten LAB, Bochud PY, Marchetti O, Perfect JR, Xavier R, Kullberg BJ, Wijmenga C, Netea MG.

Nat Commun. 2014 Sep 8;5:4675. doi: 10.1038/ncomms5675.


Pattern recognition pathways leading to a Th2 cytokine bias in allergic bronchopulmonary aspergillosis patients.

Becker KL, Gresnigt MS, Smeekens SP, Jacobs CW, Magis-Escurra C, Jaeger M, Wang X, Lubbers R, Oosting M, Joosten LA, Netea MG, Reijers MH, van de Veerdonk FL.

Clin Exp Allergy. 2015 Feb;45(2):423-37. doi: 10.1111/cea.12354.


Sugar sensing and signaling in plants.

Smeekens S, Hellmann HA.

Front Plant Sci. 2014 Mar 26;5:113. doi: 10.3389/fpls.2014.00113. eCollection 2014. No abstract available.


The ABI4-induced Arabidopsis ANAC060 transcription factor attenuates ABA signaling and renders seedlings sugar insensitive when present in the nucleus.

Li P, Zhou H, Shi X, Yu B, Zhou Y, Chen S, Wang Y, Peng Y, Meyer RC, Smeekens SC, Teng S.

PLoS Genet. 2014 Mar 13;10(3):e1004213. doi: 10.1371/journal.pgen.1004213. eCollection 2014 Mar.


IL-1 receptor blockade restores autophagy and reduces inflammation in chronic granulomatous disease in mice and in humans.

de Luca A, Smeekens SP, Casagrande A, Iannitti R, Conway KL, Gresnigt MS, Begun J, Plantinga TS, Joosten LA, van der Meer JW, Chamilos G, Netea MG, Xavier RJ, Dinarello CA, Romani L, van de Veerdonk FL.

Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3526-31. doi: 10.1073/pnas.1322831111. Epub 2014 Feb 18.


Sugar signals and the control of plant growth and development.

Lastdrager J, Hanson J, Smeekens S.

J Exp Bot. 2014 Mar;65(3):799-807. doi: 10.1093/jxb/ert474. Epub 2014 Jan 22. Review.


Autophagy is redundant for the host defense against systemic Candida albicans infections.

Smeekens SP, Malireddi RK, Plantinga TS, Buffen K, Oosting M, Joosten LA, Kullberg BJ, Perfect JR, Scott WK, van de Veerdonk FL, Xavier RJ, van de Vosse E, Kanneganti TD, Johnson MD, Netea MG.

Eur J Clin Microbiol Infect Dis. 2014 May;33(5):711-22. doi: 10.1007/s10096-013-2002-x. Epub 2013 Nov 8.


Skin microbiome imbalance in patients with STAT1/STAT3 defects impairs innate host defense responses.

Smeekens SP, Huttenhower C, Riza A, van de Veerdonk FL, Zeeuwen PL, Schalkwijk J, van der Meer JW, Xavier RJ, Netea MG, Gevers D.

J Innate Immun. 2014;6(3):253-62. doi: 10.1159/000351912. Epub 2013 Jun 22.


The effects of in vivo B-cell depleting therapy on ex-vivo cytokine production.

Smeekens SP, van den Hoogen MW, Kamburova EG, van de Veerdonk FL, Joosten I, Koenen HJ, Netea MG, Hilbrands LB, Joosten LA.

Transpl Immunol. 2013 Jun;28(4):183-8. doi: 10.1016/j.trim.2013.04.008. Epub 2013 May 4.


Aspergillus fumigatus-induced IL-22 is not restricted to a specific Th cell subset and is dependent on complement receptor 3.

Gresnigt MS, Becker KL, Smeekens SP, Jacobs CW, Joosten LA, van der Meer JW, Netea MG, van de Veerdonk FL.

J Immunol. 2013 Jun 1;190(11):5629-39. doi: 10.4049/jimmunol.1202601. Epub 2013 May 3.


Genetic susceptibility to Candida infections.

Smeekens SP, van de Veerdonk FL, Kullberg BJ, Netea MG.

EMBO Mol Med. 2013 Jun;5(6):805-13. doi: 10.1002/emmm.201201678. Epub 2013 Apr 30. Review.


Functional genomics identifies type I interferon pathway as central for host defense against Candida albicans.

Smeekens SP, Ng A, Kumar V, Johnson MD, Plantinga TS, van Diemen C, Arts P, Verwiel ET, Gresnigt MS, Fransen K, van Sommeren S, Oosting M, Cheng SC, Joosten LA, Hoischen A, Kullberg BJ, Scott WK, Perfect JR, van der Meer JW, Wijmenga C, Netea MG, Xavier RJ.

Nat Commun. 2013;4:1342. doi: 10.1038/ncomms2343.


ABI4: versatile activator and repressor.

Wind JJ, Peviani A, Snel B, Hanson J, Smeekens SC.

Trends Plant Sci. 2013 Mar;18(3):125-32. doi: 10.1016/j.tplants.2012.10.004. Epub 2012 Nov 20.


Natural variation for seed longevity and seed dormancy are negatively correlated in Arabidopsis.

Nguyen TP, Keizer P, van Eeuwijk F, Smeekens S, Bentsink L.

Plant Physiol. 2012 Dec;160(4):2083-92. doi: 10.1104/pp.112.206649. Epub 2012 Oct 18.


The influence of concentration/meditation on autonomic nervous system activity and the innate immune response: a case study.

Kox M, Stoffels M, Smeekens SP, van Alfen N, Gomes M, Eijsvogels TM, Hopman MT, van der Hoeven JG, Netea MG, Pickkers P.

Psychosom Med. 2012 Jun;74(5):489-94. doi: 10.1097/PSY.0b013e3182583c6d.


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