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The Role of Protein and Free Amino Acids on Intake, Metabolism, and Gut Microbiome: A Comparison Between Breast-Fed and Formula-Fed Rhesus Monkey Infants.

He X, Sotelo-Orozco J, Rudolph C, Lönnerdal B, Slupsky CM.

Front Pediatr. 2020 Jan 24;7:563. doi: 10.3389/fped.2019.00563. eCollection 2019.


Longitudinal Transcriptomic, Proteomic, and Metabolomic Analyses of Citrus sinensis (L.) Osbeck Graft-Inoculated with "Candidatus Liberibacter asiaticus".

Chin EL, Ramsey JS, Mishchuk DO, Saha S, Foster E, Chavez JD, Howe K, Zhong X, Polek M, Godfrey KE, Mueller LA, Bruce JE, Heck M, Slupsky CM.

J Proteome Res. 2020 Feb 7;19(2):719-732. doi: 10.1021/acs.jproteome.9b00616. Epub 2020 Jan 15.


Untargeted metabolomic analysis of plasma from relapsing-remitting multiple sclerosis patients reveals changes in metabolites associated with structural changes in brain.

Sylvestre DA, Slupsky CM, Aviv RI, Swardfager W, Taha AY.

Brain Res. 2020 Apr 1;1732:146589. doi: 10.1016/j.brainres.2019.146589. Epub 2019 Dec 6.


Effectiveness of vitamin D supplementation in Swedish children may be negatively impacted by BMI and serum fructose.

McClorry S, Slupsky CM, Lind T, Karlsland Åkeson P, Hernell O, Öhlund I.

J Nutr Biochem. 2020 Jan;75:108251. doi: 10.1016/j.jnutbio.2019.108251. Epub 2019 Oct 15.


Evaluation of California-Grown Blood and Cara Cara Oranges Through Consumer Testing, Descriptive Analysis, and Targeted Chemical Profiling.

Simons TJ, McNeil CJ, Pham VD, Suh JH, Wang Y, Slupsky CM, Guinard JX.

J Food Sci. 2019 Nov;84(11):3246-3263. doi: 10.1111/1750-3841.14820. Epub 2019 Oct 14.


Metabolomics analysis of children with autism, idiopathic-developmental delays, and Down syndrome.

Orozco JS, Hertz-Picciotto I, Abbeduto L, Slupsky CM.

Transl Psychiatry. 2019 Oct 3;9(1):243. doi: 10.1038/s41398-019-0578-3.


Publisher Correction: Metabolic phenotype of breast-fed infants, and infants fed standard formula or bovine MFGM supplemented formula: a randomized controlled trial.

He X, Parenti M, Grip T, Domellöf M, Lönnerdal B, Hernell O, Timby N, Slupsky CM.

Sci Rep. 2019 Aug 22;9(1):12382. doi: 10.1038/s41598-019-48858-y.


Metabolome and Microbiome Signatures in the Roots of Citrus Affected by Huanglongbing.

Padhi EMT, Maharaj N, Lin SY, Mishchuk DO, Chin E, Godfrey K, Foster E, Polek M, Leveau JHJ, Slupsky CM.

Phytopathology. 2019 Dec;109(12):2022-2032. doi: 10.1094/PHYTO-03-19-0103-R. Epub 2019 Nov 8.


Fecal microbiome and metabolome of infants fed bovine MFGM supplemented formula or standard formula with breast-fed infants as reference: a randomized controlled trial.

He X, Parenti M, Grip T, Lönnerdal B, Timby N, Domellöf M, Hernell O, Slupsky CM.

Sci Rep. 2019 Aug 12;9(1):11589. doi: 10.1038/s41598-019-47953-4.


Metabolomics in Human Milk Research.

Slupsky CM.

Nestle Nutr Inst Workshop Ser. 2019;90:179-190. doi: 10.1159/000490305. Epub 2019 Mar 13.


Metabolic phenotype of breast-fed infants, and infants fed standard formula or bovine MFGM supplemented formula: a randomized controlled trial.

He X, Parenti M, Grip T, Domellöf M, Lönnerdal B, Hernell O, Timby N, Slupsky CM.

Sci Rep. 2019 Jan 23;9(1):339. doi: 10.1038/s41598-018-36292-5. Erratum in: Sci Rep. 2019 Aug 22;9(1):12382.


Pilot study of probiotic/colostrum supplementation on gut function in children with autism and gastrointestinal symptoms.

Sanctuary MR, Kain JN, Chen SY, Kalanetra K, Lemay DG, Rose DR, Yang HT, Tancredi DJ, German JB, Slupsky CM, Ashwood P, Mills DA, Smilowitz JT, Angkustsiri K.

PLoS One. 2019 Jan 9;14(1):e0210064. doi: 10.1371/journal.pone.0210064. eCollection 2019.


NMR metabolomics of cerebrospinal fluid differentiates inflammatory diseases of the central nervous system.

French CD, Willoughby RE, Pan A, Wong SJ, Foley JF, Wheat LJ, Fernandez J, Encarnacion R, Ondrush JM, Fatteh N, Paez A, David D, Javaid W, Amzuta IG, Neilan AM, Robbins GK, Brunner AM, Hu WT, Mishchuk DO, Slupsky CM.

PLoS Negl Trop Dis. 2018 Dec 17;12(12):e0007045. doi: 10.1371/journal.pntd.0007045. eCollection 2018 Dec.


Worldwide Variation in Human Milk Metabolome: Indicators of Breast Physiology and Maternal Lifestyle?

Gay MCL, Koleva PT, Slupsky CM, Toit ED, Eggesbo M, Johnson CC, Wegienka G, Shimojo N, Campbell DE, Prescott SL, Munblit D, Geddes DT, Kozyrskyj AL; InVIVO LactoActive Study Investigators.

Nutrients. 2018 Aug 23;10(9). pii: E1151. doi: 10.3390/nu10091151.


Microbial structure and function in infant and juvenile rhesus macaques are primarily affected by age, not vaccination status.

Hasegawa Y, Curtis B, Yutuc V, Rulien M, Morrisroe K, Watkins K, Ferrier C, English C, Hewitson L, Slupsky CM.

Sci Rep. 2018 Oct 26;8(1):15867. doi: 10.1038/s41598-018-34019-0.


Anemia in infancy is associated with alterations in systemic metabolism and microbial structure and function in a sex-specific manner: an observational study.

McClorry S, Zavaleta N, Llanos A, Casapía M, Lönnerdal B, Slupsky CM.

Am J Clin Nutr. 2018 Dec 1;108(6):1238-1248. doi: 10.1093/ajcn/nqy249.


Supplementation of Lactobacillus plantarum Improves Markers of Metabolic Dysfunction Induced by a High Fat Diet.

Martinic A, Barouei J, Bendiks Z, Mishchuk D, Heeney DD, Martin R, Marco ML, Slupsky CM.

J Proteome Res. 2018 Aug 3;17(8):2790-2802. doi: 10.1021/acs.jproteome.8b00282. Epub 2018 Jul 6.


Sucrose metabolism alters Lactobacillus plantarum survival and interactions with the microbiota in the digestive tract.

Yin X, Heeney DD, Srisengfa YT, Chen SY, Slupsky CM, Marco ML.

FEMS Microbiol Ecol. 2018 Jul 1;94(7). doi: 10.1093/femsec/fiy084.


Effects of iron supplementation on growth, gut microbiota, metabolomics and cognitive development of rat pups.

Alexeev EE, He X, Slupsky CM, Lönnerdal B.

PLoS One. 2017 Jun 29;12(6):e0179713. doi: 10.1371/journal.pone.0179713. eCollection 2017.


Postprandial metabolic response of breast-fed infants and infants fed lactose-free vs regular infant formula: A randomized controlled trial.

Slupsky CM, He X, Hernell O, Andersson Y, Rudolph C, Lönnerdal B, West CE.

Sci Rep. 2017 Jun 16;7(1):3640. doi: 10.1038/s41598-017-03975-4.


Nopal feeding reduces adiposity, intestinal inflammation and shifts the cecal microbiota and metabolism in high-fat fed rats.

Moran-Ramos S, He X, Chin EL, Tovar AR, Torres N, Slupsky CM, Raybould HE.

PLoS One. 2017 Feb 14;12(2):e0171672. doi: 10.1371/journal.pone.0171672. eCollection 2017.


Integrated Role of Bifidobacterium animalis subsp. lactis Supplementation in Gut Microbiota, Immunity, and Metabolism of Infant Rhesus Monkeys.

He X, Slupsky CM, Dekker JW, Haggarty NW, Lönnerdal B.

mSystems. 2016 Nov 29;1(6). pii: e00128-16. eCollection 2016 Nov-Dec.


Quantification of Water-Soluble Metabolites in Medicinal Mushrooms Using Proton NMR Spectroscopy.

Lo YC, Chien SC, Mishchuk DO, Slupsky CM, Mau JL.

Int J Med Mushrooms. 2016;18(5):413-24.


Metabolomics reveals differences between three daidzein metabolizing phenotypes in adults with cardiometabolic risk factors.

Reverri EJ, Slupsky CM, Mishchuk DO, Steinberg FM.

Mol Nutr Food Res. 2017 Jan;61(1). doi: 10.1002/mnfr.201600132. Epub 2016 Aug 3.


Infant Maturity at Birth Reveals Minor Differences in the Maternal Milk Metabolome in the First Month of Lactation.

Spevacek AR, Smilowitz JT, Chin EL, Underwood MA, German JB, Slupsky CM.

J Nutr. 2015 Aug;145(8):1698-708. doi: 10.3945/jn.115.210252. Epub 2015 Jun 3.


Consumption of vitamin D2 enhanced mushrooms is associated with improved bone health.

Chen SY, Yu HT, Kao JP, Yang CC, Chiang SS, Mishchuk DO, Mau JL, Slupsky CM.

J Nutr Biochem. 2015 Jul;26(7):696-703. doi: 10.1016/j.jnutbio.2015.01.006. Epub 2015 Mar 5.


Metabolic fingerprint of dimethyl sulfone (DMSO2) in microbial-mammalian co-metabolism.

He X, Slupsky CM.

J Proteome Res. 2014 Dec 5;13(12):5281-92. doi: 10.1021/pr500629t. Epub 2014 Oct 3. Review.


An NMR metabolomic study on the effect of alendronate in ovariectomized mice.

Chen SY, Yu HT, Kao JP, Yang CC, Chiang SS, Mishchuk DO, Mau JL, Slupsky CM.

PLoS One. 2014 Sep 3;9(9):e106559. doi: 10.1371/journal.pone.0106559. eCollection 2014.


Metabolite signature of Candidatus Liberibacter asiaticus infection in two citrus varieties.

Chin EL, Mishchuk DO, Breksa AP, Slupsky CM.

J Agric Food Chem. 2014 Jul 16;62(28):6585-91. doi: 10.1021/jf5017434. Epub 2014 Jul 8.


Cross-talk between E. coli strains and a human colorectal adenocarcinoma-derived cell line.

He X, Mishchuk DO, Shah J, Weimer BC, Slupsky CM.

Sci Rep. 2013 Dec 4;3:3416. doi: 10.1038/srep03416.


Dietary pyrroloquinoline quinone (PQQ) alters indicators of inflammation and mitochondrial-related metabolism in human subjects.

Harris CB, Chowanadisai W, Mishchuk DO, Satre MA, Slupsky CM, Rucker RB.

J Nutr Biochem. 2013 Dec;24(12):2076-84. doi: 10.1016/j.jnutbio.2013.07.008.


Emerging aspects of food and nutrition on gut microbiota.

He X, Marco ML, Slupsky CM.

J Agric Food Chem. 2013 Oct 9;61(40):9559-74. doi: 10.1021/jf4029046. Epub 2013 Sep 27. Review.


The human milk metabolome reveals diverse oligosaccharide profiles.

Smilowitz JT, O'Sullivan A, Barile D, German JB, Lönnerdal B, Slupsky CM.

J Nutr. 2013 Nov;143(11):1709-18. doi: 10.3945/jn.113.178772. Epub 2013 Sep 11.


Metabolomic profiles are gender, disease and time specific in the interleukin-10 gene-deficient mouse model of inflammatory bowel disease.

Tso VK, Sydora BC, Foshaug RR, Churchill TA, Doyle J, Slupsky CM, Fedorak RN.

PLoS One. 2013 Jul 9;8(7):e67654. doi: 10.1371/journal.pone.0067654. Print 2013.


Early diet impacts infant rhesus gut microbiome, immunity, and metabolism.

O'Sullivan A, He X, McNiven EM, Haggarty NW, Lönnerdal B, Slupsky CM.

J Proteome Res. 2013 Jun 7;12(6):2833-45. doi: 10.1021/pr4001702. Epub 2013 May 23.


Metabolomic phenotyping validates the infant rhesus monkey as a model of human infant metabolism.

O'Sullivan A, He X, McNiven EM, Hinde K, Haggarty NW, Lönnerdal B, Slupsky CM.

J Pediatr Gastroenterol Nutr. 2013 Apr;56(4):355-63. doi: 10.1097/MPG.0b013e31827e1f07.


Metabolomics of cerebrospinal fluid from humans treated for rabies.

O'Sullivan A, Willoughby RE, Mishchuk D, Alcarraz B, Cabezas-Sanchez C, Condori RE, David D, Encarnacion R, Fatteh N, Fernandez J, Franka R, Hedderwick S, McCaughey C, Ondrush J, Paez-Martinez A, Rupprecht C, Velasco-Villa A, Slupsky CM.

J Proteome Res. 2013 Jan 4;12(1):481-90. doi: 10.1021/pr3009176. Epub 2012 Nov 30.


Fertilisation and pesticides affect mandarin orange nutrient composition.

Zhang X, Breksa AP 3rd, Mishchuk DO, Fake CE, O'Mahony MA, Slupsky CM.

Food Chem. 2012 Sep 15;134(2):1020-4. doi: 10.1016/j.foodchem.2012.02.218. Epub 2012 Mar 8.


Metabolomic analysis of citrus infection by 'Candidatus Liberibacter' reveals insight into pathogenicity.

Slisz AM, Breksa AP 3rd, Mishchuk DO, McCollum G, Slupsky CM.

J Proteome Res. 2012 Aug 3;11(8):4223-30. doi: 10.1021/pr300350x. Epub 2012 Jul 2.


Urinary NMR metabolomic profiles discriminate inflammatory bowel disease from healthy.

Stephens NS, Siffledeen J, Su X, Murdoch TB, Fedorak RN, Slupsky CM.

J Crohns Colitis. 2013 Mar;7(2):e42-8. doi: 10.1016/j.crohns.2012.04.019. Epub 2012 May 22.


Analytical metabolomics: nutritional opportunities for personalized health.

McNiven EM, German JB, Slupsky CM.

J Nutr Biochem. 2011 Nov;22(11):995-1002. doi: 10.1016/j.jnutbio.2011.05.016. Review.


Dextran sulfate sodium inhibits alanine synthesis in Caco-2 cells.

Ye Z, Mishchuk DO, Stephens NS, Slupsky CM.

Int J Mol Sci. 2011;12(4):2325-35. doi: 10.3390/ijms12042325. Epub 2011 Apr 4. Retraction in: Int J Mol Sci. 2012;13(2):1804.


Metabolomics and surgical oncology: Potential role for small molecule biomarkers.

Davis VW, Bathe OF, Schiller DE, Slupsky CM, Sawyer MB.

J Surg Oncol. 2011 Apr;103(5):451-9. doi: 10.1002/jso.21831. Epub 2010 Dec 28. Review.


Elevation, rootstock, and soil depth affect the nutritional quality of mandarin oranges.

Zhang X, Breksa AP 3rd, Mishchuk DO, Slupsky CM.

J Agric Food Chem. 2011 Mar 23;59(6):2672-9. doi: 10.1021/jf104335z. Epub 2011 Feb 20.


Nuclear magnetic resonance-based analysis of urine for the rapid etiological diagnosis of pneumonia.

Slupsky CM.

Expert Opin Med Diagn. 2011 Jan;5(1):63-73. doi: 10.1517/17530059.2011.537653. Epub 2010 Nov 26.


Urine metabolite analysis offers potential early diagnosis of ovarian and breast cancers.

Slupsky CM, Steed H, Wells TH, Dabbs K, Schepansky A, Capstick V, Faught W, Sawyer MB.

Clin Cancer Res. 2010 Dec 1;16(23):5835-41. doi: 10.1158/1078-0432.CCR-10-1434. Epub 2010 Oct 18.


Metabolomics and detection of colorectal cancer in humans: a systematic review.

Wang H, Tso VK, Slupsky CM, Fedorak RN.

Future Oncol. 2010 Sep;6(9):1395-406. doi: 10.2217/fon.10.107. Review.


Protein tyrosine nitration of aldolase in mast cells: a plausible pathway in nitric oxide-mediated regulation of mast cell function.

Sekar Y, Moon TC, Slupsky CM, Befus AD.

J Immunol. 2010 Jul 1;185(1):578-87. doi: 10.4049/jimmunol.0902720. Epub 2010 May 28.


NMR-based analysis of metabolites in urine provides rapid diagnosis and etiology of pneumonia.

Slupsky CM.

Biomark Med. 2010 Apr;4(2):195-7. doi: 10.2217/bmm.10.11. No abstract available.


Pneumococcal pneumonia: potential for diagnosis through a urinary metabolic profile.

Slupsky CM, Rankin KN, Fu H, Chang D, Rowe BH, Charles PG, McGeer A, Low D, Long R, Kunimoto D, Sawyer MB, Fedorak RN, Adamko DJ, Saude EJ, Shah SL, Marrie TJ.

J Proteome Res. 2009 Dec;8(12):5550-8. doi: 10.1021/pr9006427.


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