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Items: 30

1.

Long-term balancing selection drives evolution of immunity genes in Capsella.

Koenig D, Hagmann J, Li R, Bemm F, Slotte T, Neuffer B, Wright SI, Weigel D.

Elife. 2019 Feb 26;8. pii: e43606. doi: 10.7554/eLife.43606.

2.

Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa.

Monnahan P, Kolář F, Baduel P, Sailer C, Koch J, Horvath R, Laenen B, Schmickl R, Paajanen P, Šrámková G, Bohutínská M, Arnold B, Weisman CM, Marhold K, Slotte T, Bomblies K, Yant L.

Nat Ecol Evol. 2019 Mar;3(3):457-468. doi: 10.1038/s41559-019-0807-4. Epub 2019 Feb 25.

PMID:
30804518
3.

Single-cell expression noise and gene-body methylation in Arabidopsis thaliana.

Horvath R, Laenen B, Takuno S, Slotte T.

Heredity (Edinb). 2019 Jan 16. doi: 10.1038/s41437-018-0181-z. [Epub ahead of print]

PMID:
30651589
4.

Paternally expressed imprinted genes associate with hybridization barriers in Capsella.

Lafon-Placette C, Hatorangan MR, Steige KA, Cornille A, Lascoux M, Slotte T, Köhler C.

Nat Plants. 2018 Jun;4(6):352-357. doi: 10.1038/s41477-018-0161-6. Epub 2018 May 28.

PMID:
29808019
5.

Targeted Long-Read Sequencing of a Locus Under Long-Term Balancing Selection in Capsella.

Bachmann JA, Tedder A, Laenen B, Steige KA, Slotte T.

G3 (Bethesda). 2018 Mar 28;8(4):1327-1333. doi: 10.1534/g3.117.300467.

6.

Demography and mating system shape the genome-wide impact of purifying selection in Arabis alpina.

Laenen B, Tedder A, Nowak MD, Toräng P, Wunder J, Wötzel S, Steige KA, Kourmpetis Y, Odong T, Drouzas AD, Bink MCAM, Ågren J, Coupland G, Slotte T.

Proc Natl Acad Sci U S A. 2018 Jan 23;115(4):816-821. doi: 10.1073/pnas.1707492115. Epub 2018 Jan 4.

7.

The Role of Small RNA-Based Epigenetic Silencing for Purifying Selection on Transposable Elements in Capsella grandiflora.

Horvath R, Slotte T.

Genome Biol Evol. 2017 Oct 1;9(10):2911-2920. doi: 10.1093/gbe/evx206.

8.

Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora.

Steige KA, Laenen B, Reimegård J, Scofield DG, Slotte T.

Proc Natl Acad Sci U S A. 2017 Jan 31;114(5):1087-1092. doi: 10.1073/pnas.1612561114. Epub 2017 Jan 17.

9.

Rapid Evolution of Genomic Imprinting in Two Species of the Brassicaceae.

Hatorangan MR, Laenen B, Steige KA, Slotte T, Köhler C.

Plant Cell. 2016 Aug;28(8):1815-27. doi: 10.1105/tpc.16.00304. Epub 2016 Jul 27.

10.

Genomic legacies of the progenitors and the evolutionary consequences of allopolyploidy.

Steige KA, Slotte T.

Curr Opin Plant Biol. 2016 Apr;30:88-93. doi: 10.1016/j.pbi.2016.02.006. Epub 2016 Mar 1. Review.

PMID:
26943938
11.

Cis-Regulatory Changes Associated with a Recent Mating System Shift and Floral Adaptation in Capsella.

Steige KA, Reimegård J, Koenig D, Scofield DG, Slotte T.

Mol Biol Evol. 2015 Oct;32(10):2501-14. doi: 10.1093/molbev/msv169. Epub 2015 Aug 28.

12.

Non-reciprocal Interspecies Hybridization Barriers in the Capsella Genus Are Established in the Endosperm.

Rebernig CA, Lafon-Placette C, Hatorangan MR, Slotte T, Köhler C.

PLoS Genet. 2015 Jun 18;11(6):e1005295. doi: 10.1371/journal.pgen.1005295. eCollection 2015 Jun.

13.

Hybrid origins and the earliest stages of diploidization in the highly successful recent polyploid Capsella bursa-pastoris.

Douglas GM, Gos G, Steige KA, Salcedo A, Holm K, Josephs EB, Arunkumar R, Ågren JA, Hazzouri KM, Wang W, Platts AE, Williamson RJ, Neuffer B, Lascoux M, Slotte T, Wright SI.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):2806-11. doi: 10.1073/pnas.1412277112. Epub 2015 Feb 17.

14.

The impact of linked selection on plant genomic variation.

Slotte T.

Brief Funct Genomics. 2014 Jul;13(4):268-75. doi: 10.1093/bfgp/elu009. Epub 2014 Apr 23.

15.

Genomic identification of founding haplotypes reveals the history of the selfing species Capsella rubella.

Brandvain Y, Slotte T, Hazzouri KM, Wright SI, Coop G.

PLoS Genet. 2013;9(9):e1003754. doi: 10.1371/journal.pgen.1003754. Epub 2013 Sep 12.

16.

The Capsella rubella genome and the genomic consequences of rapid mating system evolution.

Slotte T, Hazzouri KM, Ågren JA, Koenig D, Maumus F, Guo YL, Steige K, Platts AE, Escobar JS, Newman LK, Wang W, Mandáková T, Vello E, Smith LM, Henz SR, Steffen J, Takuno S, Brandvain Y, Coop G, Andolfatto P, Hu TT, Blanchette M, Clark RM, Quesneville H, Nordborg M, Gaut BS, Lysak MA, Jenkins J, Grimwood J, Chapman J, Prochnik S, Shu S, Rokhsar D, Schmutz J, Weigel D, Wright SI.

Nat Genet. 2013 Jul;45(7):831-5. doi: 10.1038/ng.2669. Epub 2013 Jun 9.

PMID:
23749190
17.

Evolutionary consequences of self-fertilization in plants.

Wright SI, Kalisz S, Slotte T.

Proc Biol Sci. 2013 Jun 7;280(1760):20130133. doi: 10.1098/rspb.2013.0133. Print 2013 Jun 7. Review.

18.
19.

Genetic architecture and adaptive significance of the selfing syndrome in Capsella.

Slotte T, Hazzouri KM, Stern D, Andolfatto P, Wright SI.

Evolution. 2012 May;66(5):1360-74. doi: 10.1111/j.1558-5646.2011.01540.x. Epub 2012 Mar 3.

20.

Coalescent-based analysis distinguishes between allo- and autopolyploid origin in Shepherd's Purse (Capsella bursa-pastoris).

St Onge KR, Foxe JP, Li J, Li H, Holm K, Corcoran P, Slotte T, Lascoux M, Wright SI.

Mol Biol Evol. 2012 Jul;29(7):1721-33. doi: 10.1093/molbev/mss024. Epub 2012 Jan 27.

PMID:
22319173
21.

Genomic determinants of protein evolution and polymorphism in Arabidopsis.

Slotte T, Bataillon T, Hansen TT, St Onge K, Wright SI, Schierup MH.

Genome Biol Evol. 2011;3:1210-9. doi: 10.1093/gbe/evr094. Epub 2011 Sep 16.

22.

Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species.

Qiu S, Zeng K, Slotte T, Wright S, Charlesworth D.

Genome Biol Evol. 2011;3:868-80. doi: 10.1093/gbe/evr085. Epub 2011 Aug 18.

23.

Contrasting demographic history and population structure in Capsella rubella and Capsella grandiflora, two closely related species with different mating systems.

St Onge KR, Källman T, Slotte T, Lascoux M, Palmé AE.

Mol Ecol. 2011 Aug;20(16):3306-20. doi: 10.1111/j.1365-294X.2011.05189.x. Epub 2011 Jul 21.

PMID:
21777317
24.

Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size.

Slotte T, Foxe JP, Hazzouri KM, Wright SI.

Mol Biol Evol. 2010 Aug;27(8):1813-21. doi: 10.1093/molbev/msq062. Epub 2010 Mar 1.

PMID:
20194429
25.

Splicing variation at a FLOWERING LOCUS C homeolog is associated with flowering time variation in the tetraploid Capsella bursa-pastoris.

Slotte T, Huang HR, Holm K, Ceplitis A, Onge KS, Chen J, Lagercrantz U, Lascoux M.

Genetics. 2009 Sep;183(1):337-45. doi: 10.1534/genetics.109.103705. Epub 2009 Jul 6.

26.

Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck.

Guo YL, Bechsgaard JS, Slotte T, Neuffer B, Lascoux M, Weigel D, Schierup MH.

Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5246-51. doi: 10.1073/pnas.0808012106. Epub 2009 Mar 23.

27.

Recent speciation associated with the evolution of selfing in Capsella.

Foxe JP, Slotte T, Stahl EA, Neuffer B, Hurka H, Wright SI.

Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5241-5. doi: 10.1073/pnas.0807679106. Epub 2009 Feb 19.

28.

Polyploid speciation did not confer instant reproductive isolation in Capsella (Brassicaceae).

Slotte T, Huang H, Lascoux M, Ceplitis A.

Mol Biol Evol. 2008 Jul;25(7):1472-81. doi: 10.1093/molbev/msn092. Epub 2008 Apr 15.

PMID:
18417485
29.

Differential expression of genes important for adaptation in Capsella bursa-pastoris (Brassicaceae).

Slotte T, Holm K, McIntyre LM, Lagercrantz U, Lascoux M.

Plant Physiol. 2007 Sep;145(1):160-73. Epub 2007 Jul 13.

30.

Intrageneric phylogeny of Capsella (Brassicaceae) and the origin of the tetraploid C. bursa-pastoris based on chloroplast and nuclear DNA sequences.

Slotte T, Ceplitis A, Neuffer B, Hurka H, Lascoux M.

Am J Bot. 2006 Nov;93(11):1714-24. doi: 10.3732/ajb.93.11.1714.

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