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Items: 48

1.

Inverted Regulation of Multidrug Efflux Pumps, Acid Resistance and Porins in Benzoate-Evolved Escherichia coli K-12.

Moore JP, Li H, Engmann ML, Bischof KM, Kunka KS, Harris ME, Tancredi AC, Ditmars FS, Basting PJ, George NS, Bhagwat AA, Slonczewski JL.

Appl Environ Microbiol. 2019 Jun 7. pii: AEM.00966-19. doi: 10.1128/AEM.00966-19. [Epub ahead of print]

PMID:
31175192
2.

Experimental Evolution of Escherichia coli K-12 in the Presence of Proton Motive Force (PMF) Uncoupler Carbonyl Cyanide m-Chlorophenylhydrazone Selects for Mutations Affecting PMF-Driven Drug Efflux Pumps.

Griffith JM, Basting PJ, Bischof KM, Wrona EP, Kunka KS, Tancredi AC, Moore JP, Hyman MRL, Slonczewski JL.

Appl Environ Microbiol. 2019 Feb 20;85(5). pii: e02792-18. doi: 10.1128/AEM.02792-18. Print 2019 Mar 1.

PMID:
30578262
3.

Tile Drainage and Anthropogenic Land Use Contribute to Harmful Algal Blooms and Microbiota Shifts in Inland Water Bodies.

Mrdjen I, Fennessy S, Schaal A, Dennis R, Slonczewski JL, Lee S, Lee J.

Environ Sci Technol. 2018 Aug 7;52(15):8215-8223. doi: 10.1021/acs.est.8b03269. Epub 2018 Jul 16.

PMID:
29952549
4.

Experimental Evolution of Escherichia coli K-12 at High pH and with RpoS Induction.

Hamdallah I, Torok N, Bischof KM, Majdalani N, Chadalavada S, Mdluli N, Creamer KE, Clark M, Holdener C, Basting PJ, Gottesman S, Slonczewski JL.

Appl Environ Microbiol. 2018 Jul 17;84(15). pii: e00520-18. doi: 10.1128/AEM.00520-18. Print 2018 Aug 1.

5.

Acid Evolution of Escherichia coli K-12 Eliminates Amino Acid Decarboxylases and Reregulates Catabolism.

He A, Penix SR, Basting PJ, Griffith JM, Creamer KE, Camperchioli D, Clark MW, Gonzales AS, Chávez Erazo JS, George NS, Bhagwat AA, Slonczewski JL.

Appl Environ Microbiol. 2017 May 31;83(12). pii: e00442-17. doi: 10.1128/AEM.00442-17. Print 2017 Jun 15.

6.

Benzoate- and Salicylate-Tolerant Strains of Escherichia coli K-12 Lose Antibiotic Resistance during Laboratory Evolution.

Creamer KE, Ditmars FS, Basting PJ, Kunka KS, Hamdallah IN, Bush SP, Scott Z, He A, Penix SR, Gonzales AS, Eder EK, Camperchioli DW, Berndt A, Clark MW, Rouhier KA, Slonczewski JL.

Appl Environ Microbiol. 2016 Dec 30;83(2). pii: e02736-16. doi: 10.1128/AEM.02736-16. Print 2017 Jan 15.

7.

Periplasmic Acid Stress Increases Cell Division Asymmetry (Polar Aging) of Escherichia coli.

Clark MW, Yie AM, Eder EK, Dennis RG, Basting PJ, Martinez KA 2nd, Jones BD, Slonczewski JL.

PLoS One. 2015 Dec 29;10(12):e0144650. doi: 10.1371/journal.pone.0144650. eCollection 2015.

8.

Acid-adapted strains of Escherichia coli K-12 obtained by experimental evolution.

Harden MM, He A, Creamer K, Clark MW, Hamdallah I, Martinez KA 2nd, Kresslein RL, Bush SP, Slonczewski JL.

Appl Environ Microbiol. 2015 Mar;81(6):1932-41. doi: 10.1128/AEM.03494-14. Epub 2015 Jan 2.

9.

Escherichia coli K-12 survives anaerobic exposure at pH 2 without RpoS, Gad, or hydrogenases, but shows sensitivity to autoclaved broth products.

Riggins DP, Narvaez MJ, Martinez KA, Harden MM, Slonczewski JL.

PLoS One. 2013;8(3):e56796. doi: 10.1371/journal.pone.0056796. Epub 2013 Mar 8.

10.

Cytoplasmic pH response to acid stress in individual cells of Escherichia coli and Bacillus subtilis observed by fluorescence ratio imaging microscopy.

Martinez KA 2nd, Kitko RD, Mershon JP, Adcox HE, Malek KA, Berkmen MB, Slonczewski JL.

Appl Environ Microbiol. 2012 May;78(10):3706-14. doi: 10.1128/AEM.00354-12. Epub 2012 Mar 16.

11.

A requirement of TolC and MDR efflux pumps for acid adaptation and GadAB induction in Escherichia coli.

Deininger KN, Horikawa A, Kitko RD, Tatsumi R, Rosner JL, Wachi M, Slonczewski JL.

PLoS One. 2011 Apr 26;6(4):e18960. doi: 10.1371/journal.pone.0018960.

12.

Concerns about recently identified widespread antisense transcription in Escherichia coli.

Slonczewski JL.

MBio. 2010 May 18;1(2). pii: e00106-10; author reply e00119-10. doi: 10.1128/mBio.00106-10. No abstract available.

13.

Hydrogenase-3 contributes to anaerobic acid resistance of Escherichia coli.

Noguchi K, Riggins DP, Eldahan KC, Kitko RD, Slonczewski JL.

PLoS One. 2010 Apr 12;5(4):e10132. doi: 10.1371/journal.pone.0010132.

14.

Osmolytes contribute to pH homeostasis of Escherichia coli.

Kitko RD, Wilks JC, Garduque GM, Slonczewski JL.

PLoS One. 2010 Apr 8;5(4):e10078. doi: 10.1371/journal.pone.0010078.

15.

Cytoplasmic acidification and the benzoate transcriptome in Bacillus subtilis.

Kitko RD, Cleeton RL, Armentrout EI, Lee GE, Noguchi K, Berkmen MB, Jones BD, Slonczewski JL.

PLoS One. 2009 Dec 14;4(12):e8255. doi: 10.1371/journal.pone.0008255.

16.

Cytoplasmic pH measurement and homeostasis in bacteria and archaea.

Slonczewski JL, Fujisawa M, Dopson M, Krulwich TA.

Adv Microb Physiol. 2009;55:1-79, 317. doi: 10.1016/S0065-2911(09)05501-5. Review.

PMID:
19573695
17.

Acid and base stress and transcriptomic responses in Bacillus subtilis.

Wilks JC, Kitko RD, Cleeton SH, Lee GE, Ugwu CS, Jones BD, BonDurant SS, Slonczewski JL.

Appl Environ Microbiol. 2009 Feb;75(4):981-90. doi: 10.1128/AEM.01652-08. Epub 2008 Dec 29.

18.

Rapid acid treatment of Escherichia coli: transcriptomic response and recovery.

Kannan G, Wilks JC, Fitzgerald DM, Jones BD, Bondurant SS, Slonczewski JL.

BMC Microbiol. 2008 Feb 26;8:37. doi: 10.1186/1471-2180-8-37.

19.
20.

Oxygen limitation modulates pH regulation of catabolism and hydrogenases, multidrug transporters, and envelope composition in Escherichia coli K-12.

Hayes ET, Wilks JC, Sanfilippo P, Yohannes E, Tate DP, Jones BD, Radmacher MD, BonDurant SS, Slonczewski JL.

BMC Microbiol. 2006 Oct 6;6:89.

21.

Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution.

Novak JP, Kim SY, Xu J, Modlich O, Volsky DJ, Honys D, Slonczewski JL, Bell DA, Blattner FR, Blumwald E, Boerma M, Cosio M, Gatalica Z, Hajduch M, Hidalgo J, McInnes RR, Miller MC 3rd, Penkowa M, Rolph MS, Sottosanto J, St-Arnaud R, Szego MJ, Twell D, Wang C.

Biol Direct. 2006 Sep 7;1:27.

22.

Polyamine stress at high pH in Escherichia coli K-12.

Yohannes E, Thurber AE, Wilks JC, Tate DP, Slonczewski JL.

BMC Microbiol. 2005 Oct 13;5:59.

23.

pH regulates genes for flagellar motility, catabolism, and oxidative stress in Escherichia coli K-12.

Maurer LM, Yohannes E, Bondurant SS, Radmacher M, Slonczewski JL.

J Bacteriol. 2005 Jan;187(1):304-19.

24.
25.

pH-dependent catabolic protein expression during anaerobic growth of Escherichia coli K-12.

Yohannes E, Barnhart DM, Slonczewski JL.

J Bacteriol. 2004 Jan;186(1):192-9.

26.

Proteomic analysis of pH-dependent stress responses in Escherichia coli and Helicobacter pylori using two-dimensional gel electrophoresis.

Slonczewski JL, Kirkpatrick C.

Methods Enzymol. 2002;358:228-42. No abstract available.

PMID:
12474390
27.

pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli.

Stancik LM, Stancik DM, Schmidt B, Barnhart DM, Yoncheva YN, Slonczewski JL.

J Bacteriol. 2002 Aug;184(15):4246-58.

28.

Acetate and formate stress: opposite responses in the proteome of Escherichia coli.

Kirkpatrick C, Maurer LM, Oyelakin NE, Yoncheva YN, Maurer R, Slonczewski JL.

J Bacteriol. 2001 Nov;183(21):6466-77.

29.

pH-dependent protein profiles of Helicobacter pylori analyzed by two-dimensional gels.

Slonczewski JL, McGee DJ, Phillips J, Kirkpatrick C, Mobley HL.

Helicobacter. 2000 Dec;5(4):240-7.

PMID:
11179990
30.

Proteomics is getting easier in some ways.

Slonczewski JL.

Nature. 2000 Feb 3;403(6769):478. No abstract available.

PMID:
10702068
31.

Acid and base regulation in the proteome of Escherichia coli.

Slonczewski JL, Blankenhorn D.

Novartis Found Symp. 1999;221:75-83; discussions 83-92. Review.

PMID:
10207914
32.
33.

Proteins induced in Escherichia coli by benzoic acid.

Lambert LA, Abshire K, Blankenhorn D, Slonczewski JL.

J Bacteriol. 1997 Dec;179(23):7595-9.

34.

A glutamate-dependent acid resistance gene in Escherichia coli.

Hersh BM, Farooq FT, Barstad DN, Blankenhorn DL, Slonczewski JL.

J Bacteriol. 1996 Jul;178(13):3978-81.

35.

Comparative analysis of extreme acid survival in Salmonella typhimurium, Shigella flexneri, and Escherichia coli.

Lin J, Lee IS, Frey J, Slonczewski JL, Foster JW.

J Bacteriol. 1995 Jul;177(14):4097-104.

37.

Acid and base resistance in Escherichia coli and Shigella flexneri: role of rpoS and growth pH.

Small P, Blankenhorn D, Welty D, Zinser E, Slonczewski JL.

J Bacteriol. 1994 Mar;176(6):1729-37.

38.

A low-pH-inducible, stationary-phase acid tolerance response in Salmonella typhimurium.

Lee IS, Slonczewski JL, Foster JW.

J Bacteriol. 1994 Mar;176(5):1422-6.

39.

pH dependence and gene structure of inaA in Escherichia coli.

White S, Tuttle FE, Blankenhorn D, Dosch DC, Slonczewski JL.

J Bacteriol. 1992 Mar;174(5):1537-43.

40.

Identification of elements involved in transcriptional regulation of the Escherichia coli cad operon by external pH.

Watson N, Dunyak DS, Rosey EL, Slonczewski JL, Olson ER.

J Bacteriol. 1992 Jan;174(2):530-40.

41.

Alkaline induction of a novel gene locus, alx, in Escherichia coli.

Bingham RJ, Hall KS, Slonczewski JL.

J Bacteriol. 1990 Apr;172(4):2184-6.

42.

Novel regulatory loci controlling oxygen- and pH-regulated gene expression in Salmonella typhimurium.

Aliabadi Z, Park YK, Slonczewski JL, Foster JW.

J Bacteriol. 1988 Feb;170(2):842-51.

43.

Polymorphonuclear leukocyte locomotion is insensitive to lowered cytoplasmic calcium levels.

Zigmond SH, Slonczewski JL, Wilde MW, Carson M.

Cell Motil Cytoskeleton. 1988;9(2):184-9.

PMID:
3129198
44.

Mu d-directed lacZ fusions regulated by low pH in Escherichia coli.

Slonczewski JL, Gonzalez TN, Bartholomew FM, Holt NJ.

J Bacteriol. 1987 Jul;169(7):3001-6.

45.

Glycogen phosphorylase: a noninvasive indicator of cytoplasmic calcium.

Wilde MW, Slonczewski JL, Carson M, Zigmond SH.

Methods Enzymol. 1987;141:18-25. No abstract available.

PMID:
3298962
46.

Phosphorylase a activity as an indicator of neutrophil activation by chemotactic peptide.

Slonczewski JL, Wilde MW, Zigmond SH.

J Cell Biol. 1985 Oct;101(4):1191-7.

47.

Effects of pH and repellent tactic stimuli on protein methylation levels in Escherichia coli.

Slonczewski JL, Macnab RM, Alger JR, Castle AM.

J Bacteriol. 1982 Oct;152(1):384-99.

48.

pH homeostasis in Escherichia coli: measurement by 31P nuclear magnetic resonance of methylphosphonate and phosphate.

Slonczewski JL, Rosen BP, Alger JR, Macnab RM.

Proc Natl Acad Sci U S A. 1981 Oct;78(10):6271-5.

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