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Items: 1 to 50 of 55

1.

Proteomics reveals reduced expression of transketolase in pyrimidine 5'-nucleotidase deficient patients.

Barasa BA, van Oirschot BA, Bianchi P, van Solinge WW, Heck AJ, van Wijk R, Slijper M.

Proteomics Clin Appl. 2016 Aug;10(8):859-69. doi: 10.1002/prca.201500130.

PMID:
27381654
2.

Proteome adaptation of Saccharomyces cerevisiae to severe calorie restriction in Retentostat cultures.

Binai NA, Bisschops MM, van Breukelen B, Mohammed S, Loeff L, Pronk JT, Heck AJ, Daran-Lapujade P, Slijper M.

J Proteome Res. 2014 Aug 1;13(8):3542-53. doi: 10.1021/pr5003388. Epub 2014 Jul 18.

PMID:
25000127
3.

Challenges for red blood cell biomarker discovery through proteomics.

Barasa B, Slijper M.

Biochim Biophys Acta. 2014 May;1844(5):1003-10. doi: 10.1016/j.bbapap.2013.10.002. Epub 2013 Oct 12. Review.

PMID:
24129076
4.

CD98 marks a subpopulation of head and neck squamous cell carcinoma cells with stem cell properties.

Martens-de Kemp SR, Brink A, Stigter-van Walsum M, Damen JM, Rustenburg F, Wu T, van Wieringen WN, Schuurhuis GJ, Braakhuis BJ, Slijper M, Brakenhoff RH.

Stem Cell Res. 2013 May;10(3):477-88. doi: 10.1016/j.scr.2013.02.004. Epub 2013 Feb 18.

5.

The diversity of protein turnover and abundance under nitrogen-limited steady-state conditions in Saccharomyces cerevisiae.

Helbig AO, Daran-Lapujade P, van Maris AJ, de Hulster EA, de Ridder D, Pronk JT, Heck AJ, Slijper M.

Mol Biosyst. 2011 Dec;7(12):3316-26. doi: 10.1039/c1mb05250k. Epub 2011 Oct 10.

PMID:
21984188
6.

Protein signatures associated with tumor cell dissemination in head and neck cancer.

Bleijerveld OB, Brakenhoff RH, Schaaij-Visser TB, Damen JM, Altelaar AF, Heck AJ, Leemans CR, Slijper M.

J Proteomics. 2011 Apr 1;74(4):558-66. doi: 10.1016/j.jprot.2011.01.008. Epub 2011 Jan 22.

PMID:
21262401
7.

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels.

Helbig AO, Rosati S, Pijnappel PW, van Breukelen B, Timmers MH, Mohammed S, Slijper M, Heck AJ.

BMC Genomics. 2010 Dec 2;11:685. doi: 10.1186/1471-2164-11-685.

8.

Current status of cancer proteomics, how far are we from clinical applications?

Jiménez CR, Slijper M.

J Proteomics. 2010 Sep 10;73(10):1787-9. doi: 10.1016/j.jprot.2010.08.001. Epub 2010 Aug 6. No abstract available.

PMID:
20692387
9.

Protein biomarker discovery for head and neck cancer.

Schaaij-Visser TB, Brakenhoff RH, Leemans CR, Heck AJ, Slijper M.

J Proteomics. 2010 Sep 10;73(10):1790-803. doi: 10.1016/j.jprot.2010.01.013. Epub 2010 Feb 4. Review.

PMID:
20139037
10.

Expression of the orphan protein Plet-1 during trichilemmal differentiation of anagen hair follicles.

Raymond K, Richter A, Kreft M, Frijns E, Janssen H, Slijper M, Praetzel-Wunder S, Langbein L, Sonnenberg A.

J Invest Dermatol. 2010 Jun;130(6):1500-13. doi: 10.1038/jid.2010.4. Epub 2010 Feb 4.

11.

Exploring the membrane proteome--challenges and analytical strategies.

Helbig AO, Heck AJ, Slijper M.

J Proteomics. 2010 Mar 10;73(5):868-78. doi: 10.1016/j.jprot.2010.01.005. Epub 2010 Jan 21. Review.

PMID:
20096812
12.

Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome.

Helbig AO, Gauci S, Raijmakers R, van Breukelen B, Slijper M, Mohammed S, Heck AJ.

Mol Cell Proteomics. 2010 May;9(5):928-39. doi: 10.1074/mcp.M900463-MCP200. Epub 2010 Jan 7.

13.

Evaluation of cornulin, keratin 4, keratin 13 expression and grade of dysplasia for predicting malignant progression of oral leukoplakia.

Schaaij-Visser TB, Bremmer JF, Braakhuis BJ, Heck AJ, Slijper M, van der Waal I, Brakenhoff RH.

Oral Oncol. 2010 Feb;46(2):123-7. doi: 10.1016/j.oraloncology.2009.11.012. Epub 2009 Dec 29.

PMID:
20036603
14.

Differential Proteomics Identifies Protein Biomarkers That Predict Local Relapse of Head and Neck Squamous Cell Carcinomas.

Schaaij-Visser TB, Graveland AP, Gauci S, Braakhuis BJ, Buijze M, Heck AJ, Kuik DJ, Bloemena E, Leemans CR, Slijper M, Brakenhoff RH.

Clin Cancer Res. 2009 Dec 15;15(24):7666-7675.

15.

The influence of the acyl chain composition of cardiolipin on the stability of mitochondrial complexes; an unexpected effect of cardiolipin in alpha-ketoglutarate dehydrogenase and prohibitin complexes.

van Gestel RA, Rijken PJ, Surinova S, O'Flaherty M, Heck AJ, Killian JA, de Kroon AI, Slijper M.

J Proteomics. 2010 Feb 10;73(4):806-14. doi: 10.1016/j.jprot.2009.11.009. Epub 2009 Nov 24.

PMID:
19944197
16.

Quantitative erythrocyte membrane proteome analysis with Blue-native/SDS PAGE.

van Gestel RA, van Solinge WW, van der Toorn HW, Rijksen G, Heck AJ, van Wijk R, Slijper M.

J Proteomics. 2010 Jan 3;73(3):456-65. doi: 10.1016/j.jprot.2009.08.010. Epub 2009 Sep 21.

PMID:
19778645
17.

A three-way proteomics strategy allows differential analysis of yeast mitochondrial membrane protein complexes under anaerobic and aerobic conditions.

Helbig AO, de Groot MJ, van Gestel RA, Mohammed S, de Hulster EA, Luttik MA, Daran-Lapujade P, Pronk JT, Heck AJ, Slijper M.

Proteomics. 2009 Oct;9(20):4787-98. doi: 10.1002/pmic.200800951.

PMID:
19750512
18.

Development of selective bisubstrate-based inhibitors against protein kinase C (PKC) isozymes by using dynamic peptide microarrays.

Poot AJ, van Ameijde J, Slijper M, van den Berg A, Hilhorst R, Ruijtenbeek R, Rijkers DT, Liskamp RM.

Chembiochem. 2009 Aug 17;10(12):2042-51. doi: 10.1002/cbic.200900199.

PMID:
19618415
19.

Full-length cytokeratin-19 is released by human tumor cells: a potential role in metastatic progression of breast cancer.

Alix-Panabières C, Vendrell JP, Slijper M, Pellé O, Barbotte E, Mercier G, Jacot W, Fabbro M, Pantel K.

Breast Cancer Res. 2009;11(3):R39. doi: 10.1186/bcr2326. Epub 2009 Jun 23.

20.

Comparative proteome analysis to explore p53 pathway disruption in head and neck carcinogenesis.

Schaaij-Visser TB, Brakenhoff RH, Jansen JW, O'Flaherty MC, Smeets SJ, Heck AJ, Slijper M.

J Proteomics. 2009 Jul 21;72(5):803-14. doi: 10.1016/j.jprot.2009.05.001. Epub 2009 May 13.

PMID:
19446051
21.

Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.

Gauci S, Helbig AO, Slijper M, Krijgsveld J, Heck AJ, Mohammed S.

Anal Chem. 2009 Jun 1;81(11):4493-501. doi: 10.1021/ac9004309.

PMID:
19413330
22.

Photocrosslinking and click chemistry enable the specific detection of proteins interacting with phospholipids at the membrane interface.

Gubbens J, Ruijter E, de Fays LE, Damen JM, de Kruijff B, Slijper M, Rijkers DT, Liskamp RM, de Kroon AI.

Chem Biol. 2009 Jan 30;16(1):3-14. doi: 10.1016/j.chembiol.2008.11.009.

23.

Protein complexes in bacterial and yeast mitochondrial membranes differ in their sensitivity towards dissociation by SDS.

Gubbens J, Slijper M, de Kruijff B, de Kroon AI.

Biochim Biophys Acta. 2008 Dec;1784(12):2012-8. doi: 10.1016/j.bbapap.2008.08.020. Epub 2008 Sep 11.

PMID:
18817900
24.

Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos.

Lemeer S, Jopling C, Gouw J, Mohammed S, Heck AJ, Slijper M, den Hertog J.

Mol Cell Proteomics. 2008 Nov;7(11):2176-87. doi: 10.1074/mcp.M800081-MCP200. Epub 2008 Jun 11.

25.

NK cell protease granzyme M targets alpha-tubulin and disorganizes the microtubule network.

Bovenschen N, de Koning PJ, Quadir R, Broekhuizen R, Damen JM, Froelich CJ, Slijper M, Kummer JA.

J Immunol. 2008 Jun 15;180(12):8184-91.

26.

Highly efficient depletion strategy for the two most abundant erythrocyte soluble proteins improves proteome coverage dramatically.

Ringrose JH, van Solinge WW, Mohammed S, O'Flaherty MC, van Wijk R, Heck AJ, Slijper M.

J Proteome Res. 2008 Jul;7(7):3060-3. doi: 10.1021/pr8001029. Epub 2008 May 22.

PMID:
18494517
27.

Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo.

Lemeer S, Pinkse MW, Mohammed S, van Breukelen B, den Hertog J, Slijper M, Heck AJ.

J Proteome Res. 2008 Apr;7(4):1555-64. doi: 10.1021/pr700667w. Epub 2008 Feb 29.

PMID:
18307296
28.

Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes.

de Groot MJL, Daran-Lapujade P, van Breukelen B, Knijnenburg TA, de Hulster EAF, Reinders MJT, Pronk JT, Heck AJR, Slijper M.

Microbiology. 2007 Nov;153(Pt 11):3864-3878. doi: 10.1099/mic.0.2007/009969-0.

PMID:
17975095
29.

The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels.

Daran-Lapujade P, Rossell S, van Gulik WM, Luttik MA, de Groot MJ, Slijper M, Heck AJ, Daran JM, de Winde JH, Westerhoff HV, Pronk JT, Bakker BM.

Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15753-8. Epub 2007 Sep 26.

30.

Endogenous phosphotyrosine signaling in zebrafish embryos.

Lemeer S, Ruijtenbeek R, Pinkse MW, Jopling C, Heck AJ, den Hertog J, Slijper M.

Mol Cell Proteomics. 2007 Dec;6(12):2088-99. Epub 2007 Aug 14.

31.

Protein-tyrosine kinase activity profiling in knock down zebrafish embryos.

Lemeer S, Jopling C, Naji F, Ruijtenbeek R, Slijper M, Heck AJ, den Hertog J.

PLoS One. 2007 Jul 4;2(7):e581.

32.

Probing the membrane interface-interacting proteome using photoactivatable lipid cross-linkers.

Gubbens J, Vader P, Damen JM, O'Flaherty MC, Slijper M, de Kruijff B, de Kroon AI.

J Proteome Res. 2007 May;6(5):1951-62. Epub 2007 Mar 22.

PMID:
17375948
33.

Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.

Benschop JJ, Mohammed S, O'Flaherty M, Heck AJ, Slijper M, Menke FL.

Mol Cell Proteomics. 2007 Jul;6(7):1198-214. Epub 2007 Feb 21.

34.

Reversible oxidation of the membrane distal domain of receptor PTPalpha is mediated by a cyclic sulfenamide.

Yang J, Groen A, Lemeer S, Jans A, Slijper M, Roe SM, den Hertog J, Barford D.

Biochemistry. 2007 Jan 23;46(3):709-19.

PMID:
17223692
35.

Selective enrichment of Ser-/Thr-phosphorylated peptides in the presence of Ser-/Thr-glycosylated peptides.

Poot AJ, Ruijter E, Nuijens T, Dirksen EH, Heck AJ, Slijper M, Rijkers DT, Liskamp RM.

Proteomics. 2006 Dec;6(24):6394-9.

PMID:
17163440
36.

Investigating the dynamic nature of the interactions between nuclear proteins and histones upon DNA damage using an immobilized peptide chemical proteomics approach.

Dirksen EH, Pinkse MW, Rijkers DT, Cloos J, Liskamp RM, Slijper M, Heck AJ.

J Proteome Res. 2006 Sep;5(9):2380-8.

PMID:
16944950
37.

Proteome analysis of yeast response to various nutrient limitations.

Kolkman A, Daran-Lapujade P, Fullaondo A, Olsthoorn MM, Pronk JT, Slijper M, Heck AJ.

Mol Syst Biol. 2006;2:2006.0026. Epub 2006 May 16.

38.

Human lymphoblastoid proteome analysis reveals a role for the inhibitor of acetyltransferases complex in DNA double-strand break response.

Dirksen EH, Cloos J, Braakhuis BJ, Brakenhoff RH, Heck AJ, Slijper M.

Cancer Res. 2006 Feb 1;66(3):1473-80.

39.

Development of a novel chemical probe for the selective enrichment of phosphorylated serine- and threonine-containing peptides.

van der Veken P, Dirksen EH, Ruijter E, Elgersma RC, Heck AJ, Rijkers DT, Slijper M, Liskamp RM.

Chembiochem. 2005 Dec;6(12):2271-80.

PMID:
16254931
40.

Development and application of proteomics technologies in Saccharomyces cerevisiae.

Kolkman A, Slijper M, Heck AJ.

Trends Biotechnol. 2005 Dec;23(12):598-604. Epub 2005 Oct 3. Review.

PMID:
16202464
41.

Structural characterization and immunogenicity in wild-type and immune tolerant mice of degraded recombinant human interferon alpha2b.

Hermeling S, Aranha L, Damen JM, Slijper M, Schellekens H, Crommelin DJ, Jiskoot W.

Pharm Res. 2005 Dec;22(12):1997-2006. Epub 2005 Oct 3.

PMID:
16184451
42.

Detection and identification of stable oligomeric protein complexes in Escherichi coli inner membranes: a proteomics approach.

Spelbrink RE, Kolkman A, Slijper M, Killian JA, de Kruijff B.

J Biol Chem. 2005 Aug 5;280(31):28742-8. Epub 2005 May 25.

43.
44.

Differential oxidation of protein-tyrosine phosphatases.

Groen A, Lemeer S, van der Wijk T, Overvoorde J, Heck AJ, Ostman A, Barford D, Slijper M, den Hertog J.

J Biol Chem. 2005 Mar 18;280(11):10298-304. Epub 2004 Dec 28.

45.

A new chemical probe for proteomics of carbohydrate-binding proteins.

Ballell L, Alink KJ, Slijper M, Versluis C, Liskamp RM, Pieters RJ.

Chembiochem. 2005 Feb;6(2):291-5. No abstract available.

PMID:
15578642
46.

Comparative proteome analysis of Saccharomyces cerevisiae grown in chemostat cultures limited for glucose or ethanol.

Kolkman A, Olsthoorn MM, Heeremans CE, Heck AJ, Slijper M.

Mol Cell Proteomics. 2005 Jan;4(1):1-11. Epub 2004 Oct 23.

47.

Toxicogenomics of bromobenzene hepatotoxicity: a combined transcriptomics and proteomics approach.

Heijne WH, Stierum RH, Slijper M, van Bladeren PJ, van Ommen B.

Biochem Pharmacol. 2003 Mar 1;65(5):857-75.

PMID:
12628495
48.

Backbone and side chain dynamics of lac repressor headpiece (1-56) and its complex with DNA.

Slijper M, Boelens R, Davis AL, Konings RN, van der Marel GA, van Boom JH, Kaptein R.

Biochemistry. 1997 Jan 7;36(1):249-54.

PMID:
8993340
49.

Formation of the hinge helix in the lac repressor is induced upon binding to the lac operator.

Spronk CA, Slijper M, van Boom JH, Kaptein R, Boelens R.

Nat Struct Biol. 1996 Nov;3(11):916-9. No abstract available.

PMID:
8901866
50.

Improved HSQC experiments for the observation of exchange broadened signals.

Mulder FA, Spronk CA, Slijper M, Kaptein R, Boelens R.

J Biomol NMR. 1996 Sep;8(2):223-8. doi: 10.1007/BF00211169.

PMID:
22911143

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