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Items: 1 to 50 of 77

1.

FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science.

Sichtig H, Minogue T, Yan Y, Stefan C, Hall A, Tallon L, Sadzewicz L, Nadendla S, Klimke W, Hatcher E, Shumway M, Aldea DL, Allen J, Koehler J, Slezak T, Lovell S, Schoepp R, Scherf U.

Nat Commun. 2019 Jul 25;10(1):3313. doi: 10.1038/s41467-019-11306-6.

2.

Axiom Microbiome Array, the next generation microarray for high-throughput pathogen and microbiome analysis.

Thissen JB, Be NA, McLoughlin K, Gardner S, Rack PG, Shapero MH, Rowland RRR, Slezak T, Jaing CJ.

PLoS One. 2019 Feb 8;14(2):e0212045. doi: 10.1371/journal.pone.0212045. eCollection 2019.

3.

How a ferromagnet drives an antiferromagnet in exchange biased CoO/Fe(110) bilayers.

Ślęzak M, Ślęzak T, Dróżdż P, Matlak B, Matlak K, Kozioł-Rachwał A, Zając M, Korecki J.

Sci Rep. 2019 Jan 29;9(1):889. doi: 10.1038/s41598-018-37110-8.

4.

A novel variant of torque teno virus 7 identified in patients with Kawasaki disease.

Thissen JB, Isshiki M, Jaing C, Nagao Y, Lebron Aldea D, Allen JE, Izui M, Slezak TR, Ishida T, Sano T.

PLoS One. 2018 Dec 28;13(12):e0209683. doi: 10.1371/journal.pone.0209683. eCollection 2018.

5.

GnRH antagonist treatment of malignant adrenocortical tumors.

Doroszko M, Chrusciel M, Stelmaszewska J, Slezak T, Anisimowicz S, Plöckinger U, Quinkler M, Bonomi M, Wolczynski S, Huhtaniemi I, Toppari J, Rahman NA.

Endocr Relat Cancer. 2019 Jan 1;26(1):103-117. doi: 10.1530/ERC-17-0399.

6.

Increased Discrimination of Treponema pallidum Strains by Subtyping With a 4-Component System Incorporating a Mononucleotide Tandem Repeat in rpsA.

Pillay A, Lee MK, Slezak T, Katz SS, Sun Y, Chi KH, Morshed M, Philip S, Ballard RC, Chen CY.

Sex Transm Dis. 2019 Apr;46(4):e42-e45. doi: 10.1097/OLQ.0000000000000935.

PMID:
30365462
7.

Direct Diagnostic Tests for Lyme Disease.

Schutzer SE, Body BA, Boyle J, Branson BM, Dattwyler RJ, Fikrig E, Gerald NJ, Gomes-Solecki M, Kintrup M, Ledizet M, Levin AE, Lewinski M, Liotta LA, Marques A, Mead PS, Mongodin EF, Pillai S, Rao P, Robinson WH, Roth KM, Schriefer ME, Slezak T, Snyder JL, Steere AC, Witkowski J, Wong SJ, Branda JA.

Clin Infect Dis. 2019 Mar 5;68(6):1052-1057. doi: 10.1093/cid/ciy614.

PMID:
30307486
8.

Advances in Serodiagnostic Testing for Lyme Disease Are at Hand.

Branda JA, Body BA, Boyle J, Branson BM, Dattwyler RJ, Fikrig E, Gerald NJ, Gomes-Solecki M, Kintrup M, Ledizet M, Levin AE, Lewinski M, Liotta LA, Marques A, Mead PS, Mongodin EF, Pillai S, Rao P, Robinson WH, Roth KM, Schriefer ME, Slezak T, Snyder J, Steere AC, Witkowski J, Wong SJ, Schutzer SE.

Clin Infect Dis. 2018 Mar 19;66(7):1133-1139. doi: 10.1093/cid/cix943.

9.

Bovine ovarian follicular growth and development correlate with lysophosphatidic acid expression.

Sinderewicz E, Grycmacher K, Boruszewska D, Kowalczyk-Zięba I, Staszkiewicz J, Ślężak T, Woclawek-Potocka I.

Theriogenology. 2018 Jan 15;106:1-14. doi: 10.1016/j.theriogenology.2017.09.027. Epub 2017 Sep 25.

PMID:
29028570
10.

Correction to: Expression of factors involved in apoptosis and cell survival is correlated with enzymes synthesizing lysophosphatidic acid and its receptors in granulosa cells originating from different types of bovine ovarian follicles.

Sinderewicz E, Grycmacher K, Boruszewska D, Kowalczyk-Zięba I, Staszkiewicz J, Ślężak T, Woclawek-Potocka I.

Reprod Biol Endocrinol. 2017 Oct 9;15(1):82. doi: 10.1186/s12958-017-0298-6. No abstract available.

11.

Luteinizing Hormone and GATA4 Action in the Adrenocortical Tumorigenesis of Gonadectomized Female Mice.

Doroszko M, Chrusciel M, Stelmaszewska J, Slezak T, Rivero-Muller A, Padzik A, Anisimowicz S, Wolczynski S, Huhtaniemi I, Toppari J, Rahman NA.

Cell Physiol Biochem. 2017;43(3):1064-1076. doi: 10.1159/000481718. Epub 2017 Oct 4.

12.

Expression of factors involved in apoptosis and cell survival is correlated with enzymes synthesizing lysophosphatidic acid and its receptors in granulosa cells originating from different types of bovine ovarian follicles.

Sinderewicz E, Grycmacher K, Boruszewska D, Kowalczyk-Zięba I, Staszkiewicz J, Ślężak T, Woclawek-Potocka I.

Reprod Biol Endocrinol. 2017 Sep 6;15(1):72. doi: 10.1186/s12958-017-0287-9. Erratum in: Reprod Biol Endocrinol. 2017 Oct 9;15(1):82.

13.

Rapid Bayesian optimisation for synthesis of short polymer fiber materials.

Li C, Rubín de Celis Leal D, Rana S, Gupta S, Sutti A, Greenhill S, Slezak T, Height M, Venkatesh S.

Sci Rep. 2017 Jul 18;7(1):5683. doi: 10.1038/s41598-017-05723-0.

14.

Detection of ESKAPE Bacterial Pathogens at the Point of Care Using Isothermal DNA-Based Assays in a Portable Degas-Actuated Microfluidic Diagnostic Assay Platform.

Renner LD, Zan J, Hu LI, Martinez M, Resto PJ, Siegel AC, Torres C, Hall SB, Slezak TR, Nguyen TH, Weibel DB.

Appl Environ Microbiol. 2017 Feb 1;83(4). pii: e02449-16. doi: 10.1128/AEM.02449-16. Print 2017 Feb 15.

15.

Culture-Independent Diagnostics for Health Security.

Doggett NA, Mukundan H, Lefkowitz EJ, Slezak TR, Chain PS, Morse S, Anderson K, Hodge DR, Pillai S.

Health Secur. 2016 May-Jun;14(3):122-42. doi: 10.1089/hs.2015.0074. Review.

PMID:
27314653
16.

Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing.

Gardner SN, Frey KG, Redden CL, Thissen JB, Allen JE, Allred AF, Dyer MD, Mokashi VP, Slezak TR.

BMC Res Notes. 2015 Nov 16;8:682. doi: 10.1186/s13104-015-1530-0.

17.

Phonons in Ultrathin Oxide Films: 2D to 3D Transition in FeO on Pt(111).

Spiridis N, Zając M, Piekarz P, Chumakov AI, Freindl K, Goniakowski J, Kozioł-Rachwał A, Parliński K, Ślęzak M, Ślęzak T, Wdowik UD, Wilgocka-Ślęzak D, Korecki J.

Phys Rev Lett. 2015 Oct 30;115(18):186102. doi: 10.1103/PhysRevLett.115.186102. Epub 2015 Oct 29.

PMID:
26565477
18.

Pathogen surveillance in wild bottlenose dolphins Tursiops truncatus.

Jaing C, Thissen JB, Gardner S, McLoughlin K, Slezak T, Bossart GD, Fair PA.

Dis Aquat Organ. 2015 Oct 16;116(2):83-91. doi: 10.3354/dao02917.

19.

Using populations of human and microbial genomes for organism detection in metagenomes.

Ames SK, Gardner SN, Marti JM, Slezak TR, Gokhale MB, Allen JE.

Genome Res. 2015 Jul;25(7):1056-67. doi: 10.1101/gr.184879.114. Epub 2015 Apr 29.

20.

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome.

Gardner SN, Slezak T, Hall BG.

Bioinformatics. 2015 Sep 1;31(17):2877-8. doi: 10.1093/bioinformatics/btv271. Epub 2015 Apr 25.

PMID:
25913206
21.

On the front lines: Stakeholder threat cues determine how identified employees cope with scandal.

Grandey AA, Krannitz MA, Slezak T.

J Occup Health Psychol. 2015 Jul;20(3):388-403. doi: 10.1037/a0038666. Epub 2015 Jan 19.

PMID:
25602276
22.

Bacterial genome reference databases: progress and challenges.

Slezak T.

PDA J Pharm Sci Technol. 2014 Nov-Dec;68(6):619-25. doi: 10.5731/pdajpst.2014.01017.

PMID:
25475636
23.

Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes.

Gardner SN, Slezak T.

BMC Bioinformatics. 2014 Jul 9;15:237. doi: 10.1186/1471-2105-15-237.

24.

Oxygen on an Fe monolayer on W(110): From chemisorption to oxidation.

Freindl K, Partyka-Jankowska E, Karaś W, Zając M, Madej E, Spiridis N, Slęzak M, Slęzak T, Wiśnios D, Korecki J.

Surf Sci. 2013 Nov;617(100):183-191.

25.

Analysis of sensitivity and rapid hybridization of a multiplexed Microbial Detection Microarray.

Thissen JB, McLoughlin K, Gardner S, Gu P, Mabery S, Slezak T, Jaing C.

J Virol Methods. 2014 Jun;201:73-8. doi: 10.1016/j.jviromet.2014.01.024. Epub 2014 Mar 3.

26.

Optimizing SNP microarray probe design for high accuracy microbial genotyping.

Gardner SN, Thissen JB, McLoughlin KS, Slezak T, Jaing CJ.

J Microbiol Methods. 2013 Sep;94(3):303-10. doi: 10.1016/j.mimet.2013.07.006. Epub 2013 Jul 17.

27.

An attenuated Lassa vaccine in SIV-infected rhesus macaques does not persist or cause arenavirus disease but does elicit Lassa virus-specific immunity.

Zapata JC, Poonia B, Bryant J, Davis H, Ateh E, George L, Crasta O, Zhang Y, Slezak T, Jaing C, Pauza CD, Goicochea M, Moshkoff D, Lukashevich IS, Salvato MS.

Virol J. 2013 Feb 12;10:52. doi: 10.1186/1743-422X-10-52.

28.

Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs.

Chen-Harris H, Borucki MK, Torres C, Slezak TR, Allen JE.

BMC Genomics. 2013 Feb 12;14:96. doi: 10.1186/1471-2164-14-96.

29.

The role of viral population diversity in adaptation of bovine coronavirus to new host environments.

Borucki MK, Allen JE, Chen-Harris H, Zemla A, Vanier G, Mabery S, Torres C, Hullinger P, Slezak T.

PLoS One. 2013;8(1):e52752. doi: 10.1371/journal.pone.0052752. Epub 2013 Jan 7.

30.

The dynamics of the non-heme iron in bacterial reaction centers from Rhodobacter sphaeroides.

Hałas A, Orzechowska A, Derrien V, Chumakov AI, Sebban P, Fiedor J, Lipińska M, Zając M, Ślęzak T, Strzałka K, Matlak K, Korecki J, Fiedor L, Burda K.

Biochim Biophys Acta. 2012 Dec;1817(12):2095-102. doi: 10.1016/j.bbabio.2012.08.003. Epub 2012 Aug 16.

31.

Detection of adventitious viruses from biologicals using a broad-spectrum microbial detection array.

Jaing C, Gardner S, McLoughlin K, Thissen JB, Slezak T.

PDA J Pharm Sci Technol. 2011 Nov-Dec;65(6):668-74. doi: 10.5731/pdajpst.2011.00838.

PMID:
22294595
32.

Kinetics and selectivity of permanganate chemiluminescence: a study of hydroxyl and amino disubstituted benzene positional isomers.

Slezak T, Smith ZM, Adcock JL, Hindson CM, Barnett NW, Nesterenko PN, Francis PS.

Anal Chim Acta. 2011 Nov 30;707(1-2):121-7. doi: 10.1016/j.aca.2011.09.024. Epub 2011 Sep 22.

PMID:
22027128
33.

Solution mixing and the emission of light in flow-cells for chemiluminescence detection.

Terry JM, Zammit EM, Slezak T, Barnett NW, Olson DC, Wolcott DK, Edwards DL, Francis PS.

Analyst. 2011 Mar 7;136(5):913-9. doi: 10.1039/c0an00591f. Epub 2010 Dec 2.

PMID:
21127794
34.

A microbial detection array (MDA) for viral and bacterial detection.

Gardner SN, Jaing CJ, McLoughlin KS, Slezak TR.

BMC Genomics. 2010 Nov 25;11:668. doi: 10.1186/1471-2164-11-668.

35.

Enhanced permanganate chemiluminescence.

Francis PS, Hindson CM, Terry JM, Smith ZM, Slezak T, Adcock JL, Fox BL, Barnett NW.

Analyst. 2011 Jan 7;136(1):64-6. doi: 10.1039/c0an00588f. Epub 2010 Oct 7.

PMID:
20927460
36.

Noncollinear magnetization structure at the thickness-driven spin-reorientation transition in epitaxial Fe films on W(110).

Slezak T, Slezak M, Zajac M, Freindl K, Kozioł-Rachwał A, Matlak K, Spiridis N, Wilgocka-Slezak D, Partyka-Jankowska E, Rennhofer M, Chumakov AI, Stankov S, Rüffer R, Korecki J.

Phys Rev Lett. 2010 Jul 9;105(2):027206. Epub 2010 Jul 9.

PMID:
20867738
37.

Coupling of collective motions of the protein matrix to vibrations of the non-heme iron in bacterial photosynthetic reaction centers.

Orzechowska A, Lipińska M, Fiedor J, Chumakov A, Zajac M, Slezak T, Matlak K, Strzałka K, Korecki J, Fiedor L, Burda K.

Biochim Biophys Acta. 2010 Oct;1797(10):1696-704. doi: 10.1016/j.bbabio.2010.06.012. Epub 2010 Jul 11. Erratum in: Biochim Biophys Acta. 2011 Jan;1807(1):165-6.

38.

Autocatalytic nature of permanganate oxidations exploited for highly sensitive chemiluminescence detection.

Slezak T, Terry JM, Francis PS, Hindson CM, Olson DC, Wolcott DK, Barnett NW.

Anal Chem. 2010 Mar 15;82(6):2580-4. doi: 10.1021/ac9028399.

PMID:
20163159
39.

Conserved amino acid markers from past influenza pandemic strains.

Allen JE, Gardner SN, Vitalis EA, Slezak TR.

BMC Microbiol. 2009 Apr 22;9:77. doi: 10.1186/1471-2180-9-77.

40.

Tailoring of the perpendicular magnetization component in ferromagnetic films on a vicinal substrate.

Stupakiewicz A, Maziewski A, Matlak K, Spiridis N, Slezak M, Slezak T, Zajac M, Korecki J.

Phys Rev Lett. 2008 Nov 21;101(21):217202. Epub 2008 Nov 20.

PMID:
19113447
41.

Selectivity and potential interference from phenolic compounds in chemiluminescence methods for the determination of synephrine.

Francis PS, Brown AJ, Bellomarino SA, Taylor AM, Slezak T, Barnett NW.

Luminescence. 2009 Mar-Apr;24(2):90-5. doi: 10.1002/bio.1070.

PMID:
18785612
42.

Multiplexed molecular assay for rapid exclusion of foot-and-mouth disease.

Lenhoff RJ, Naraghi-Arani P, Thissen JB, Olivas J, Carillo AC, Chinn C, Rasmussen M, Messenger SM, Suer LD, Smith SM, Tammero LF, Vitalis EA, Slezak TR, Hullinger PJ, Hindson BJ, Hietala SK, Crossley BM, McBride MT.

J Virol Methods. 2008 Oct;153(1):61-9. doi: 10.1016/j.jviromet.2008.06.015. Epub 2008 Jul 25.

PMID:
18634827
43.

A functional gene array for detection of bacterial virulence elements.

Jaing C, Gardner S, McLoughlin K, Mulakken N, Alegria-Hartman M, Banda P, Williams P, Gu P, Wagner M, Manohar C, Slezak T.

PLoS One. 2008 May 14;3(5):e2163. doi: 10.1371/journal.pone.0002163.

44.

An ultrahigh vacuum system for in situ studies of thin films and nanostructures by nuclear resonance scattering of synchrotron radiation.

Stankov S, Rüffer R, Sladecek M, Rennhofer M, Sepiol B, Vogl G, Spiridis N, Slezak T, Korecki J.

Rev Sci Instrum. 2008 Apr;79(4):045108. doi: 10.1063/1.2906321.

PMID:
18447553
45.

DNA signatures for detecting genetic engineering in bacteria.

Allen JE, Gardner SN, Slezak TR.

Genome Biol. 2008;9(3):R56. doi: 10.1186/gb-2008-9-3-r56. Epub 2008 Mar 18.

46.

Diagnostic evaluation of multiplexed reverse transcription-PCR microsphere array assay for detection of foot-and-mouth and look-alike disease viruses.

Hindson BJ, Reid SM, Baker BR, Ebert K, Ferris NP, Tammero LF, Lenhoff RJ, Naraghi-Arani P, Vitalis EA, Slezak TR, Hullinger PJ, King DP.

J Clin Microbiol. 2008 Mar;46(3):1081-9. doi: 10.1128/JCM.01740-07. Epub 2008 Jan 23.

47.

STRALCP--structure alignment-based clustering of proteins.

Zemla A, Geisbrecht B, Smith J, Lam M, Kirkpatrick B, Wagner M, Slezak T, Zhou CE.

Nucleic Acids Res. 2007;35(22):e150. Epub 2007 Nov 26.

48.

Phonons in iron: from the bulk to an epitaxial monolayer.

Stankov S, Röhlsberger R, Slezak T, Sladecek M, Sepiol B, Vogl G, Chumakov AI, Rüffer R, Spiridis N, Łazewski J, Parliński K, Korecki J.

Phys Rev Lett. 2007 Nov 2;99(18):185501. Epub 2007 Oct 30.

PMID:
17995420
49.

Phonons at the Fe(110) surface.

Slezak T, Łazewski J, Stankov S, Parlinski K, Reitinger R, Rennhofer M, Rüffer R, Sepiol B, Slezak M, Spiridis N, Zajac M, Chumakov AI, Korecki J.

Phys Rev Lett. 2007 Aug 10;99(6):066103. Epub 2007 Aug 7.

PMID:
17930843
50.

Effect of the mutation rate and background size on the quality of pathogen identification.

Reed C, Fofanov V, Putonti C, Chumakov S, Slezak T, Fofanov Y.

Bioinformatics. 2007 Oct 15;23(20):2665-71. Epub 2007 Sep 19.

PMID:
17881407

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