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Items: 49

1.

CRISPR/CAS9 targeted CAPTURE of mammalian genomic regions for characterization by NGS.

Slesarev A, Viswanathan L, Tang Y, Borgschulte T, Achtien K, Razafsky D, Onions D, Chang A, Cote C.

Sci Rep. 2019 Mar 5;9(1):3587. doi: 10.1038/s41598-019-39667-4.

2.

Correction to Improved Synthesis of Graphene Oxide.

Marcano DC, Kosynkin DV, Berlin JM, Sinitskii A, Sun Z, Slesarev AS, Alemany LB, Lu W, Tour JM.

ACS Nano. 2018 Feb 27;12(2):2078. doi: 10.1021/acsnano.8b00128. Epub 2018 Jan 12. No abstract available.

PMID:
29328621
3.

Sugar Metabolism of the First Thermophilic Planctomycete Thermogutta terrifontis: Comparative Genomic and Transcriptomic Approaches.

Elcheninov AG, Menzel P, Gudbergsdottir SR, Slesarev AI, Kadnikov VV, Krogh A, Bonch-Osmolovskaya EA, Peng X, Kublanov IV.

Front Microbiol. 2017 Nov 2;8:2140. doi: 10.3389/fmicb.2017.02140. eCollection 2017.

4.

Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT.

Golyshina OV, Tran H, Reva ON, Lemak S, Yakunin AF, Goesmann A, Nechitaylo TY, LaCono V, Smedile F, Slesarev A, Rojo D, Barbas C, Ferrer M, Yakimov MM, Golyshin PN.

Sci Rep. 2017 Jun 16;7(1):3682. doi: 10.1038/s41598-017-03904-5.

5.

Influence of dopants on the impermeability of graphene.

Mallineni SSK, Boukhvalov DW, Zhidkov IS, Kukharenko AI, Slesarev AI, Zatsepin AF, Cholakh SO, Rao AM, Serkiz SM, Bhattacharya S, Kurmaev EZ, Podila R.

Nanoscale. 2017 May 11;9(18):6145-6150. doi: 10.1039/c7nr00949f.

PMID:
28447704
6.

A novel real-time PCR assay for highly specific detection and quantification of vaginal lactobacilli.

Demkin VV, Koshechkin SI, Slesarev A.

Mol Cell Probes. 2017 Apr;32:33-39. doi: 10.1016/j.mcp.2016.11.006. Epub 2016 Nov 25.

PMID:
27890610
7.

Isolation and Characterization of the First Xylanolytic Hyperthermophilic Euryarchaeon Thermococcus sp. Strain 2319x1 and Its Unusual Multidomain Glycosidase.

Gavrilov SN, Stracke C, Jensen K, Menzel P, Kallnik V, Slesarev A, Sokolova T, Zayulina K, Bräsen C, Bonch-Osmolovskaya EA, Peng X, Kublanov IV, Siebers B.

Front Microbiol. 2016 May 3;7:552. doi: 10.3389/fmicb.2016.00552. eCollection 2016.

8.

Draft Genome Sequence of the Fungus Trametes hirsuta 072.

Pavlov AR, Tyazhelova TV, Moiseenko KV, Vasina DV, Mosunova OV, Fedorova TV, Maloshenok LG, Landesman EO, Bruskin SA, Psurtseva NV, Slesarev AI, Kozyavkin SA, Koroleva OV.

Genome Announc. 2015 Nov 19;3(6). pii: e01287-15. doi: 10.1128/genomeA.01287-15.

9.

Complete Genome Sequence of Lactobacillus acidophilus FSI4, Isolated from Yogurt.

Iartchouk O, Kozyavkin S, Karamychev V, Slesarev A.

Genome Announc. 2015 Apr 9;3(2). pii: e00166-15. doi: 10.1128/genomeA.00166-15.

10.

Meniscus-mask lithography for fabrication of narrow nanowires.

Abramova V, Slesarev AS, Tour JM.

Nano Lett. 2015 May 13;15(5):2933-7. doi: 10.1021/nl504716u. Epub 2015 Apr 7.

PMID:
25826605
11.

Genome Sequence of a Hyperthermophilic Archaeon, Thermococcus nautili 30-1, That Produces Viral Vesicles.

Oberto J, Gaudin M, Cossu M, Gorlas A, Slesarev A, Marguet E, Forterre P.

Genome Announc. 2014 Mar 27;2(2). pii: e00243-14. doi: 10.1128/genomeA.00243-14.

12.

Meniscus-mask lithography for narrow graphene nanoribbons.

Abramova V, Slesarev AS, Tour JM.

ACS Nano. 2013 Aug 27;7(8):6894-8. doi: 10.1021/nn403057t. Epub 2013 Jul 26.

PMID:
23879469
13.

Graphene oxide for effective radionuclide removal.

Romanchuk AY, Slesarev AS, Kalmykov SN, Kosynkin DV, Tour JM.

Phys Chem Chem Phys. 2013 Feb 21;15(7):2321-7. doi: 10.1039/c2cp44593j. Epub 2013 Jan 8.

PMID:
23296256
14.

Cooperation between catalytic and DNA binding domains enhances thermostability and supports DNA synthesis at higher temperatures by thermostable DNA polymerases.

Pavlov AR, Pavlova NV, Kozyavkin SA, Slesarev AI.

Biochemistry. 2012 Mar 13;51(10):2032-43. doi: 10.1021/bi2014807. Epub 2012 Mar 1.

15.

Layer-by-layer removal of graphene for device patterning.

Dimiev A, Kosynkin DV, Sinitskii A, Slesarev A, Sun Z, Tour JM.

Science. 2011 Mar 4;331(6021):1168-72. doi: 10.1126/science.1199183. Erratum in: Science. 2011 Apr 15;332(6027):306.

16.

Improved synthesis of graphene oxide.

Marcano DC, Kosynkin DV, Berlin JM, Sinitskii A, Sun Z, Slesarev A, Alemany LB, Lu W, Tour JM.

ACS Nano. 2010 Aug 24;4(8):4806-14. doi: 10.1021/nn1006368. Erratum in: ACS Nano. 2018 Feb 27;12(2):2078.

PMID:
20731455
17.

Photonic crystal formed by the imaginary part of the refractive index.

Li J, Liang B, Liu Y, Zhang P, Zhou J, Klimonsky SO, Slesarev AS, Tretyakov YD, O'Faolain L, Krauss TF.

Adv Mater. 2010 Jun 25;22(24):2676-9. doi: 10.1002/adma.200903938. No abstract available.

PMID:
20446300
18.

Search for primitive Methanopyrus based on genetic distance between Val- and Ile-tRNA synthetases.

Yu Z, Takai K, Slesarev A, Xue H, Wong JT.

J Mol Evol. 2009 Oct;69(4):386-94. doi: 10.1007/s00239-009-9297-3. Epub 2009 Oct 20.

PMID:
19841848
19.

Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth.

Lee JH, Karamychev VN, Kozyavkin SA, Mills D, Pavlov AR, Pavlova NV, Polouchine NN, Richardson PM, Shakhova VV, Slesarev AI, Weimer B, O'Sullivan DJ.

BMC Genomics. 2008 May 27;9:247. doi: 10.1186/1471-2164-9-247.

20.

Genome comparison and proteomic characterization of Thermus thermophilus bacteriophages P23-45 and P74-26: siphoviruses with triplex-forming sequences and the longest known tails.

Minakhin L, Goel M, Berdygulova Z, Ramanculov E, Florens L, Glazko G, Karamychev VN, Slesarev AI, Kozyavkin SA, Khromov I, Ackermann HW, Washburn M, Mushegian A, Severinov K.

J Mol Biol. 2008 Apr 25;378(2):468-80. doi: 10.1016/j.jmb.2008.02.018. Epub 2008 Feb 15.

21.

Topoisomerase V relaxes supercoiled DNA by a constrained swiveling mechanism.

Taneja B, Schnurr B, Slesarev A, Marko JF, Mondragón A.

Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14670-5. Epub 2007 Sep 5.

22.

Comparative genomics of the lactic acid bacteria.

Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, Koonin E, Pavlov A, Pavlova N, Karamychev V, Polouchine N, Shakhova V, Grigoriev I, Lou Y, Rohksar D, Lucas S, Huang K, Goodstein DM, Hawkins T, Plengvidhya V, Welker D, Hughes J, Goh Y, Benson A, Baldwin K, Lee JH, Díaz-Muñiz I, Dosti B, Smeianov V, Wechter W, Barabote R, Lorca G, Altermann E, Barrangou R, Ganesan B, Xie Y, Rawsthorne H, Tamir D, Parker C, Breidt F, Broadbent J, Hutkins R, O'Sullivan D, Steele J, Unlu G, Saier M, Klaenhammer T, Richardson P, Kozyavkin S, Weimer B, Mills D.

Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15611-6. Epub 2006 Oct 9.

23.

Structure of the N-terminal fragment of topoisomerase V reveals a new family of topoisomerases.

Taneja B, Patel A, Slesarev A, Mondragón A.

EMBO J. 2006 Jan 25;25(2):398-408. Epub 2006 Jan 5.

24.

Stabilization of Taq DNA polymerase at high temperature by protein folding pathways from a hyperthermophilic archaeon, Pyrococcus furiosus.

Laksanalamai P, Pavlov AR, Slesarev AI, Robb FT.

Biotechnol Bioeng. 2006 Jan 5;93(1):1-5.

PMID:
16299772
25.

High-throughput production of optimized primers (fimers) for whole-genome direct sequencing.

Polushin N, Malykh A, Morocho AM, Slesarev A, Kozyavkin S.

Methods Mol Biol. 2005;288:291-304.

PMID:
15333911
26.

Recent developments in the optimization of thermostable DNA polymerases for efficient applications.

Pavlov AR, Pavlova NV, Kozyavkin SA, Slesarev AI.

Trends Biotechnol. 2004 May;22(5):253-60. Review. No abstract available.

PMID:
15109812
27.

Finishing "working draft" BAC projects by directed sequencing with ThermoFidelase and Fimers.

Malykh A, Malykh O, Polushin N, Kozyavkin S, Slesarev A.

Methods Mol Biol. 2004;255:295-308. No abstract available.

PMID:
15020833
28.

Use of Fimers to eliminate polymerase chain reaction and primer-dimer artifacts and to increase yield in BAC-sequencing reactions.

Malykh A, Polushin N, Slesarev A, Kozyavkin S.

Methods Mol Biol. 2004;255:221-9. No abstract available.

PMID:
15020828
29.

Helix-hairpin-helix motifs confer salt resistance and processivity on chimeric DNA polymerases.

Pavlov AR, Belova GI, Kozyavkin SA, Slesarev AI.

Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13510-5. Epub 2002 Oct 4.

30.

Nucleosome-like complex of the histone from the hyperthermophile Methanopyrus kandleri (MkaH) with linear DNA.

Pavlov NA, Cherny DI, Jovin TM, Slesarev AI.

J Biomol Struct Dyn. 2002 Oct;20(2):207-14.

PMID:
12354072
31.

The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens.

Slesarev AI, Mezhevaya KV, Makarova KS, Polushin NN, Shcherbinina OV, Shakhova VV, Belova GI, Aravind L, Natale DA, Rogozin IB, Tatusov RL, Wolf YI, Stetter KO, Malykh AG, Koonin EV, Kozyavkin SA.

Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4644-9.

32.

Identification, cloning and characterization of a new DNA-binding protein from the hyperthermophilic methanogen Methanopyrus kandleri.

Pavlov NA, Cherny DI, Nazimov IV, Slesarev AI, Subramaniam V.

Nucleic Acids Res. 2002 Feb 1;30(3):685-94.

33.

The domain organization and properties of individual domains of DNA topoisomerase V, a type 1B topoisomerase with DNA repair activities.

Belova GI, Prasad R, Nazimov IV, Wilson SH, Slesarev AI.

J Biol Chem. 2002 Feb 15;277(7):4959-65. Epub 2001 Dec 3.

34.

An ancestral nuclear protein assembly: crystal structure of the Methanopyrus kandleri histone.

Fahrner RL, Cascio D, Lake JA, Slesarev A.

Protein Sci. 2001 Oct;10(10):2002-7.

35.

Topoisomerase V from Methanopyrus kandleri.

Slesarev AI, Belova GI, Lake JA, Kozyavkin SA.

Methods Enzymol. 2001;334:179-92. No abstract available.

PMID:
11398460
36.

A type IB topoisomerase with DNA repair activities.

Belova GI, Prasad R, Kozyavkin SA, Lake JA, Wilson SH, Slesarev AI.

Proc Natl Acad Sci U S A. 2001 May 22;98(11):6015-20. Epub 2001 May 15.

37.

Negative constrained DNA supercoiling in archaeal nucleosomes.

Musgrave D, Forterre P, Slesarev A.

Mol Microbiol. 2000 Jan;35(2):341-9.

38.

Evidence for an early prokaryotic origin of histones H2A and H4 prior to the emergence of eukaryotes.

Slesarev AI, Belova GI, Kozyavkin SA, Lake JA.

Nucleic Acids Res. 1998 Jan 15;26(2):427-30.

39.

A two-subunit type I DNA topoisomerase (reverse gyrase) from an extreme hyperthermophile.

Krah R, Kozyavkin SA, Slesarev AI, Gellert M.

Proc Natl Acad Sci U S A. 1996 Jan 9;93(1):106-10.

40.

DNA enzymology above 100 degrees C. Topoisomerase V unlinks circular DNA at 80-122 degrees C.

Kozyavkin SA, Pushkin AV, Eiserling FA, Stetter KO, Lake JA, Slesarev AI.

J Biol Chem. 1995 Jun 9;270(23):13593-5.

41.

A reverse gyrase with an unusual structure. A type I DNA topoisomerase from the hyperthermophile Methanopyrus kandleri is a two-subunit protein.

Kozyavkin SA, Krah R, Gellert M, Stetter KO, Lake JA, Slesarev AI.

J Biol Chem. 1994 Apr 15;269(15):11081-9.

42.
43.

DNA topoisomerase V is a relative of eukaryotic topoisomerase I from a hyperthermophilic prokaryote.

Slesarev AI, Stetter KO, Lake JA, Gellert M, Krah R, Kozyavkin SA.

Nature. 1993 Aug 19;364(6439):735-7.

PMID:
8395022
45.

DNA linking potential generated by gyrase.

Kozyavkin SA, Slesarev AI, Malkhosyan SR, Panyutin IG.

Eur J Biochem. 1990 Jul 20;191(1):105-13.

46.

Archaebacterial reverse gyrase cleavage-site specificity is similar to that of eubacterial DNA topoisomerases I.

Kovalsky OI, Kozyavkin SA, Slesarev AI.

Nucleic Acids Res. 1990 May 11;18(9):2801-5.

47.

DNA substrate specificity of reverse gyrase from extremely thermophilic archaebacteria.

Slesarev AI, Kozyavkin SA.

J Biomol Struct Dyn. 1990 Feb;7(4):935-42.

PMID:
2155623
49.

[Nature of the interaction of light-chain immunoglobulins with immobilized heavy chains].

Gel'fand IM, Ibragimov AR, Rokhlin OV, Slesarev AI, Tonevitskiĭ AG.

Dokl Akad Nauk SSSR. 1984 Jan-Feb;274(1):202-6. Russian. No abstract available.

PMID:
6423355

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