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Items: 1 to 50 of 151

1.

Draft Genome Sequence of Campylobacter fetus subsp. fetus CITCf01, Isolated from a Patient with Subacute Bacterial Endocarditis.

Culligan EP, O'Connor J, Lynch C, O'Brien D, Vaughan C, Bolton D, Coffey A, Sleator RD, Lucey B.

Microbiol Resour Announc. 2019 Mar 14;8(11). pii: e01556-18. doi: 10.1128/MRA.01556-18.

2.

Terraforming: synthetic biology's final frontier.

Sleator RD, Smith N.

Arch Microbiol. 2019 Mar 30. doi: 10.1007/s00203-019-01651-x. [Epub ahead of print]

PMID:
30929030
3.

A rapid and sensitive system for recovery of nucleic acids from Mycobacteria sp. on archived glass slides.

A Talip B, Snelling WJ, Sleator RD, Lowery C, Dooley JSG.

BMC Microbiol. 2018 Nov 26;18(1):196. doi: 10.1186/s12866-018-1335-0.

4.

Early life nutrition.

Finn S, Culligan EP, Snelling WJ, Sleator RD.

Sci Prog. 2018 Oct 1;101(4):332-359. doi: 10.3184/003685018X15360040523721. Epub 2018 Oct 8.

PMID:
30296969
5.

Empirical treatment of urinary tract infections: how rational are our guidelines?

O'Grady MC, Barry L, Corcoran GD, Hooton C, Sleator RD, Lucey B.

J Antimicrob Chemother. 2019 Jan 1;74(1):214-217. doi: 10.1093/jac/dky405.

PMID:
30295780
6.

Trials and Tribulations of Enteric Parasitology in the Molecular Era.

O' Leary JK, Blake L, Corcoran D, Sleator RD, Lucey B.

J Med Microbiol. 2018 Feb;67(2):145-147. doi: 10.1099/jmm.0.000670. Epub 2017 Dec 21. No abstract available.

PMID:
29265996
7.

Daily and seasonal trends of electricity and water use on pasture-based automatic milking dairy farms.

Shortall J, O'Brien B, Sleator RD, Upton J.

J Dairy Sci. 2018 Feb;101(2):1565-1578. doi: 10.3168/jds.2017-13407. Epub 2017 Nov 15.

8.

So long, farewell, Auf Wiedersehen, Adieu….

Sleator RD.

Bioengineered. 2018 Jan 1;9(1):1. doi: 10.1080/21655979.2017.1404788. Epub 2017 Nov 30. No abstract available.

9.

The effect of concentrate supplementation on milk production and cow traffic in early and late lactation in a pasture-based automatic milking system.

Shortall J, Foley C, Sleator RD, O'Brien B.

Animal. 2018 Apr;12(4):853-863. doi: 10.1017/S1751731117002221. Epub 2017 Sep 21.

PMID:
28931455
10.

Directed panspermia: a 21st century perspective.

Sleator RD, Smith N.

Sci Prog. 2017 May 1;100(2):187-193. doi: 10.3184/003685017X14901006155062.

PMID:
28693677
11.

The impact of multi-generational genotype imputation strategies on imputation accuracy and subsequent genomic predictions.

Judge MM, Purfield DC, Sleator RD, Berry DP.

J Anim Sci. 2017 Apr;95(4):1489-1501. doi: 10.2527/jas.2016.1212.

PMID:
28464096
12.

TRAPPIST-1: The dawning of the age of Aquarius.

Sleator RD, Smith N.

Bioengineered. 2017 May 4;8(3):194-195. doi: 10.1080/21655979.2017.1306998. Epub 2017 Mar 21. No abstract available.

13.

Antibiotics v2.0: computational and synthetic biology approaches to combat antibiotic resistance.

Culligan EP, Sleator RD.

Future Microbiol. 2017 Mar;12:267-269. doi: 10.2217/fmb-2017-0005. Epub 2017 Mar 3. No abstract available.

14.

Engineered Probiotics: Applications and Biological Containment.

Sola-Oladokun B, Culligan EP, Sleator RD.

Annu Rev Food Sci Technol. 2017 Feb 28;8:353-370. doi: 10.1146/annurev-food-030216-030256. Epub 2017 Jan 11.

PMID:
28125354
15.

Ultra-low-density genotype panels for breed assignment of Angus and Hereford cattle.

Judge MM, Kelleher MM, Kearney JF, Sleator RD, Berry DP.

Animal. 2017 Jun;11(6):938-947. doi: 10.1017/S1751731116002457. Epub 2016 Nov 24.

PMID:
27881206
16.

Advances in the Microbiome: Applications to Clostridium difficile Infection.

Culligan EP, Sleator RD.

J Clin Med. 2016 Sep 21;5(9). pii: E83. doi: 10.3390/jcm5090083. Review.

17.

Editorial: From Genes to Species: Novel Insights from Metagenomics.

Culligan EP, Sleator RD.

Front Microbiol. 2016 Aug 3;7:1181. doi: 10.3389/fmicb.2016.01181. eCollection 2016. No abstract available.

18.

Investment appraisal of automatic milking and conventional milking technologies in a pasture-based dairy system.

Shortall J, Shalloo L, Foley C, Sleator RD, O'Brien B.

J Dairy Sci. 2016 Sep;99(9):7700-7713. doi: 10.3168/jds.2016-11256. Epub 2016 Aug 8.

19.

Changing Diagnostic Methods and Increased Detection of Verotoxigenic Escherichia coli, Ireland.

Rice T, Quinn N, Sleator RD, Lucey B.

Emerg Infect Dis. 2016 Sep;22(9):1656-7. doi: 10.3201/eid2209.160477. Epub 2016 Sep 15.

20.

Synthetic biology: from mainstream to counterculture.

Sleator RD.

Arch Microbiol. 2016 Sep;198(7):711-3. doi: 10.1007/s00203-016-1257-x. Epub 2016 Jun 17. Review.

PMID:
27316777
21.

Shedding light on betL*: pPL2-lux mediated real-time analysis of betL* expression in Listeria monocytogenes.

Keane SM, Culligan EP, Hoffmann RF, Gahan CG, Hill C, Snelling WJ, Sleator RD.

Bioengineered. 2016 Apr 2;7(2):116-9. doi: 10.1080/21655979.2016.1171438.

22.

Stool consistency: no hard and fast rules for the diagnosis of VTEC infection.

Ross S, O'Callaghan I, Jermy R, Blake L, Corcoran D, Sleator RD, Lucey B.

J Clin Pathol. 2016 Sep;69(9):837. doi: 10.1136/jclinpath-2016-203792. Epub 2016 May 4. No abstract available.

PMID:
27147700
23.

Vancomycin-resistant enterococci carriage in an acute Irish hospital.

Whelton E, Lynch C, O'Reilly B, Corcoran GD, Cryan B, Keane SM, Sleator RD, Lucey B.

J Hosp Infect. 2016 Jun;93(2):175-80. doi: 10.1016/j.jhin.2016.03.005. Epub 2016 Mar 24.

PMID:
27112046
24.

JCVI-syn3.0 - A synthetic genome stripped bare!

Sleator RD.

Bioengineered. 2016 Apr 2;7(2):53-6. doi: 10.1080/21655979.2016.1175847. No abstract available.

25.

Evaluation of developed low-density genotype panels for imputation to higher density in independent dairy and beef cattle populations.

Judge MM, Kearney JF, McClure MC, Sleator RD, Berry DP.

J Anim Sci. 2016 Mar;94(3):949-62. doi: 10.2527/jas.2015-0044.

PMID:
27065257
26.

Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis.

Clooney AG, Fouhy F, Sleator RD, O' Driscoll A, Stanton C, Cotter PD, Claesson MJ.

PLoS One. 2016 Feb 5;11(2):e0148028. doi: 10.1371/journal.pone.0148028. eCollection 2016.

27.

Under the microscope: From pathogens to probiotics and back.

Sleator RD.

Bioengineered. 2015;6(5):275-82. doi: 10.1080/21655979.2015.1089368. Review.

28.

Designer probiotics: Development and applications in gastrointestinal health.

Sleator RD.

World J Gastrointest Pathophysiol. 2015 Aug 15;6(3):73-8. doi: 10.4291/wjgp.v6.i3.73. Review.

29.

Draft Genome Sequences of Six Different Staphylococcus epidermidis Clones, Isolated Individually from Preterm Neonates Presenting with Sepsis at Edinburgh's Royal Infirmary.

Walsh P, Bekaert M, Carroll J, Manning T, Kelly B, O'Driscoll A, Lu X, Smith C, Dickinson P, Templeton K, Ghazal P, Sleator RD.

Genome Announc. 2015 May 14;3(3). pii: e00471-15. doi: 10.1128/genomeA.00471-15.

30.

Functional Screening of the Cronobacter sakazakii BAA-894 Genome reveals a role for ProP (ESA_02131) in carnitine uptake.

Feeney A, Sleator RD.

Bioengineered. 2015;6(3):161-5. doi: 10.1080/21655979.2015.1043500. Epub 2015 Apr 27.

31.

Genomics of Weissella cibaria with an examination of its metabolic traits.

Lynch KM, Lucid A, Arendt EK, Sleator RD, Lucey B, Coffey A.

Microbiology. 2015 Apr;161(Pt 4):914-30. doi: 10.1099/mic.0.000053. Epub 2015 Feb 12.

PMID:
25678547
32.

HBLAST: Parallelised sequence similarity--A Hadoop MapReducable basic local alignment search tool.

O'Driscoll A, Belogrudov V, Carroll J, Kropp K, Walsh P, Ghazal P, Sleator RD.

J Biomed Inform. 2015 Apr;54:58-64. doi: 10.1016/j.jbi.2015.01.008. Epub 2015 Jan 24.

33.

Cronobacter sakazakii: stress survival and virulence potential in an opportunistic foodborne pathogen.

Feeney A, Kropp KA, O'Connor R, Sleator RD.

Gut Microbes. 2014;5(6):711-8. doi: 10.4161/19490976.2014.983774. Review.

34.

The role of the Cronobacter sakazakii ProP C-terminal coiled coil domain in osmotolerance.

Feeney A, Johnston CD, Lucid A, O'Mahony J, Coffey A, Lucey B, Sleator RD.

Gut Pathog. 2014 Dec 16;6(1):46. doi: 10.1186/s13099-014-0046-9. eCollection 2014.

35.

The genetic code. Rewritten, revised, repurposed.

Sleator RD.

Artif DNA PNA XNA. 2014;5(2):e29408. doi: 10.4161/adna.29408.

36.

Enhanced expression of codon optimized Mycobacterium avium subsp. paratuberculosis antigens in Lactobacillus salivarius.

Johnston CD, Bannantine JP, Govender R, Endersen L, Pletzer D, Weingart H, Coffey A, O'Mahony J, Sleator RD.

Front Cell Infect Microbiol. 2014 Sep 4;4:120. doi: 10.3389/fcimb.2014.00120. eCollection 2014.

37.

Draft Genome Sequence of a Serratia marcescens Strain Isolated from a Preterm Neonatal Blood Sepsis Patient at the Royal Infirmary, Edinburgh, Scotland, United Kingdom.

Kropp KA, Lucid A, Carroll J, Belgrudov V, Walsh P, Kelly B, Smith C, Dickinson P, O'Driscoll A, Templeton K, Ghazal P, Sleator RD.

Genome Announc. 2014 Sep 11;2(5). pii: e00908-14. doi: 10.1128/genomeA.00908-14.

38.

Draft Genome Sequence of an Enterococcus faecalis Strain Isolated from a Neonatal Blood Sepsis Patient.

Kropp KA, Lucid A, Carroll J, Belgrudov V, Walsh P, Kelly B, Smith C, Dickinson P, O'Driscoll A, Templeton K, Ghazal P, Sleator RD.

Genome Announc. 2014 Sep 11;2(5). pii: e00907-14. doi: 10.1128/genomeA.00907-14.

39.

Draft Genome Sequence of a Staphylococcus aureus Isolate Taken from the Blood of a Preterm Neonatal Blood Sepsis Patient.

Kropp KA, Lucid A, Carroll J, Belgrudov V, Walsh P, Kelly B, Templeton K, Smith C, Dickinson P, O'Driscoll A, Ghazal P, Sleator RD.

Genome Announc. 2014 Sep 11;2(5). pii: e00906-14. doi: 10.1128/genomeA.00906-14.

40.

Draft Genome Sequence of a Pantoea sp. Isolated from a Preterm Neonatal Blood Sepsis Patient.

Kropp KA, Lucid A, Carroll J, Belgrudov V, Walsh P, Kelly B, Templeton K, Smith C, Dickinson P, O'Driscoll A, Ghazal P, Sleator RD.

Genome Announc. 2014 Sep 11;2(5). pii: e00904-14. doi: 10.1128/genomeA.00904-14.

41.

Draft Genome Sequence of a Staphylococcus warneri Strain Isolated from a Preterm Neonate Blood Sepsis Patient at the Royal Infirmary, Edinburgh, Scotland.

Kropp KA, Lucid A, Carroll J, Belgrudov V, Walsh P, Kelly B, Smith C, Dickinson P, O'Driscoll A, Templeton K, Ghazal P, Sleator RD.

Genome Announc. 2014 Sep 4;2(5). pii: e00877-14. doi: 10.1128/genomeA.00877-14.

42.

Draft Genome Sequence of a Streptococcus agalactiae Strain Isolated from a Preterm Neonate Blood Sepsis Patient at the Royal Infirmary, Edinburgh, Scotland.

Kropp KA, Lucid A, Carroll J, Belgrudov V, Walsh P, Kelly B, Smith C, Dickinson P, O'Driscoll A, Templeton K, Ghazal P, Sleator RD.

Genome Announc. 2014 Sep 4;2(5). pii: e00875-14. doi: 10.1128/genomeA.00875-14.

43.

Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family β-carotene 15,15'-monooxygenase.

Culligan EP, Sleator RD, Marchesi JR, Hill C.

PLoS One. 2014 Jul 24;9(7):e103318. doi: 10.1371/journal.pone.0103318. eCollection 2014.

44.

Analysis of the role of the Cronobacter sakazakii ProP homologues in osmotolerance.

Feeney A, Johnston CD, Govender R, O'Mahony J, Coffey A, Sleator RD.

Gut Pathog. 2014 May 24;6:15. doi: 10.1186/1757-4749-6-15. eCollection 2014.

45.

Campylobacter corcagiensis sp. nov., isolated from faeces of captive lion-tailed macaques (Macaca silenus).

Koziel M, O'Doherty P, Vandamme P, Corcoran GD, Sleator RD, Lucey B.

Int J Syst Evol Microbiol. 2014 Aug;64(Pt 8):2878-83. doi: 10.1099/ijs.0.063867-0. Epub 2014 May 29.

PMID:
24876239
46.

Genetics just got SEXY: Sequences encoding XY.

Sleator RD.

Bioengineered. 2014 Jul-Aug;5(4):214-5. doi: 10.4161/bioe.29306. Epub 2014 May 21.

47.

Combined metagenomic and phenomic approaches identify a novel salt tolerance gene from the human gut microbiome.

Culligan EP, Marchesi JR, Hill C, Sleator RD.

Front Microbiol. 2014 Apr 29;5:189. doi: 10.3389/fmicb.2014.00189. eCollection 2014.

48.

Draft Genome Sequence of Campylobacter corcagiensis Strain CIT045T, a Representative of a Novel Campylobacter Species Isolated from Lion-Tailed Macaques (Macaca silenus).

Koziel M, Lucid A, Bullman S, Corcoran GD, Lucey B, Sleator RD.

Genome Announc. 2014 Apr 17;2(2). pii: e00248-14. doi: 10.1128/genomeA.00248-14.

49.

Detection and molecular analysis of Campylobacter ureolyticus in domestic animals.

Koziel M, Corcoran GD, Sleator RD, Lucey B.

Gut Pathog. 2014 Apr 16;6:9. doi: 10.1186/1757-4749-6-9. eCollection 2014.

50.

Draft Genome Sequence of Campylobacter ureolyticus Strain CIT007, the First Whole-Genome Sequence of a Clinical Isolate.

Lucid A, Bullman S, Koziel M, Corcoran GD, Cotter PD, Sleator RD, Lucey B.

Genome Announc. 2014 Apr 10;2(2). pii: e00262-14. doi: 10.1128/genomeA.00262-14.

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