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Items: 1 to 50 of 205

1.

Reconstructing the genetic history of late Neanderthals.

Hajdinjak M, Fu Q, Hübner A, Petr M, Mafessoni F, Grote S, Skoglund P, Narasimham V, Rougier H, Crevecoeur I, Semal P, Soressi M, Talamo S, Hublin JJ, Gušić I, Kućan Ž, Rudan P, Golovanova LV, Doronichev VB, Posth C, Krause J, Korlević P, Nagel S, Nickel B, Slatkin M, Patterson N, Reich D, Prüfer K, Meyer M, Pääbo S, Kelso J.

Nature. 2018 Mar 29;555(7698):652-656. doi: 10.1038/nature26151. Epub 2018 Mar 21.

PMID:
29562232
2.

40,000-Year-Old Individual from Asia Provides Insight into Early Population Structure in Eurasia.

Yang MA, Gao X, Theunert C, Tong H, Aximu-Petri A, Nickel B, Slatkin M, Meyer M, Pääbo S, Kelso J, Fu Q.

Curr Biol. 2017 Oct 23;27(20):3202-3208.e9. doi: 10.1016/j.cub.2017.09.030. Epub 2017 Oct 12.

PMID:
29033327
3.

A high-coverage Neandertal genome from Vindija Cave in Croatia.

Prüfer K, de Filippo C, Grote S, Mafessoni F, Korlević P, Hajdinjak M, Vernot B, Skov L, Hsieh P, Peyrégne S, Reher D, Hopfe C, Nagel S, Maricic T, Fu Q, Theunert C, Rogers R, Skoglund P, Chintalapati M, Dannemann M, Nelson BJ, Key FM, Rudan P, Kućan Ž, Gušić I, Golovanova LV, Doronichev VB, Patterson N, Reich D, Eichler EE, Slatkin M, Schierup MH, Andrés AM, Kelso J, Meyer M, Pääbo S.

Science. 2017 Nov 3;358(6363):655-658. doi: 10.1126/science.aao1887. Epub 2017 Oct 5.

PMID:
28982794
4.

Determination of genetic relatedness from low-coverage human genome sequences using pedigree simulations.

Martin MD, Jay F, Castellano S, Slatkin M.

Mol Ecol. 2017 Aug;26(16):4145-4157. doi: 10.1111/mec.14188. Epub 2017 Jul 7.

PMID:
28543951
5.

Joint Estimation of Relatedness Coefficients and Allele Frequencies from Ancient Samples.

Theunert C, Racimo F, Slatkin M.

Genetics. 2017 Jun;206(2):1025-1035. doi: 10.1534/genetics.117.200600. Epub 2017 Apr 10.

6.

Excess of genomic defects in a woolly mammoth on Wrangel island.

Rogers RL, Slatkin M.

PLoS Genet. 2017 Mar 2;13(3):e1006601. doi: 10.1371/journal.pgen.1006601. eCollection 2017 Mar.

7.

Distinguishing recent admixture from ancestral population structure.

Theunert C, Slatkin M.

Genome Biol Evol. 2017 Feb 10. doi: 10.1093/gbe/evx018. [Epub ahead of print] No abstract available.

8.

Correction: Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans.

Racimo F, Renaud G, Slatkin M.

PLoS Genet. 2016 Nov 8;12(11):e1006444. doi: 10.1371/journal.pgen.1006444. eCollection 2016 Nov.

9.

Statistical methods for analyzing ancient DNA from hominins.

Slatkin M.

Curr Opin Genet Dev. 2016 Dec;41:72-76. doi: 10.1016/j.gde.2016.08.004. Epub 2016 Sep 5. Review.

10.

Ancient DNA and human history.

Slatkin M, Racimo F.

Proc Natl Acad Sci U S A. 2016 Jun 7;113(23):6380-7. doi: 10.1073/pnas.1524306113. Epub 2016 Jun 6.

11.

Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans.

Racimo F, Renaud G, Slatkin M.

PLoS Genet. 2016 Apr 6;12(4):e1005972. doi: 10.1371/journal.pgen.1005972. eCollection 2016 Apr. Erratum in: PLoS Genet. 2016 Nov 8;12 (11):e1006444.

12.

Bayesian Inference of Natural Selection from Allele Frequency Time Series.

Schraiber JG, Evans SN, Slatkin M.

Genetics. 2016 May;203(1):493-511. doi: 10.1534/genetics.116.187278. Epub 2016 Mar 23.

13.

Tracking the origins of Yakutian horses and the genetic basis for their fast adaptation to subarctic environments.

Librado P, Der Sarkissian C, Ermini L, Schubert M, Jónsson H, Albrechtsen A, Fumagalli M, Yang MA, Gamba C, Seguin-Orlando A, Mortensen CD, Petersen B, Hoover CA, Lorente-Galdos B, Nedoluzhko A, Boulygina E, Tsygankova S, Neuditschko M, Jagannathan V, Thèves C, Alfarhan AH, Alquraishi SA, Al-Rasheid KA, Sicheritz-Ponten T, Popov R, Grigoriev S, Alekseev AN, Rubin EM, McCue M, Rieder S, Leeb T, Tikhonov A, Crubézy E, Slatkin M, Marques-Bonet T, Nielsen R, Willerslev E, Kantanen J, Prokhortchouk E, Orlando L.

Proc Natl Acad Sci U S A. 2015 Dec 15;112(50):E6889-97. doi: 10.1073/pnas.1513696112. Epub 2015 Nov 23.

14.

Isolation-by-distance-and-time in a stepping-stone model.

Duforet-Frebourg N, Slatkin M.

Theor Popul Biol. 2016 Apr;108:24-35. doi: 10.1016/j.tpb.2015.11.003. Epub 2015 Nov 21.

15.

Using Ancient Samples in Projection Analysis.

Yang MA, Slatkin M.

G3 (Bethesda). 2015 Nov 6;6(1):99-105. doi: 10.1534/g3.115.023788.

16.

Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse.

Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, Gamba C, Lorente-Galdos B, Polani S, Steiner C, Neuditschko M, Jagannathan V, Feh C, Greenblatt CL, Ludwig A, Abramson NI, Zimmermann W, Schafberg R, Tikhonov A, Sicheritz-Ponten T, Willerslev E, Marques-Bonet T, Ryder OA, McCue M, Rieder S, Leeb T, Slatkin M, Orlando L.

Curr Biol. 2015 Oct 5;25(19):2577-83. doi: 10.1016/j.cub.2015.08.032. Epub 2015 Sep 24.

17.

The effective founder effect in a spatially expanding population.

Peter BM, Slatkin M.

Evolution. 2015 Mar;69(3):721-34. doi: 10.1111/evo.12609. Epub 2015 Mar 10.

18.

New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa.

Macholdt E, Slatkin M, Pakendorf B, Stoneking M.

Am J Phys Anthropol. 2015 Apr;156(4):661-4. doi: 10.1002/ajpa.22675. Epub 2014 Dec 2. Erratum in: Am J Phys Anthropol. 2015 Sep;158(1):172.

19.

A hidden Markov model for investigating recent positive selection through haplotype structure.

Chen H, Hey J, Slatkin M.

Theor Popul Biol. 2015 Feb;99:18-30. doi: 10.1016/j.tpb.2014.11.001. Epub 2014 Nov 13.

20.

Genome sequence of a 45,000-year-old modern human from western Siberia.

Fu Q, Li H, Moorjani P, Jay F, Slepchenko SM, Bondarev AA, Johnson PL, Aximu-Petri A, Prüfer K, de Filippo C, Meyer M, Zwyns N, Salazar-García DC, Kuzmin YV, Keates SG, Kosintsev PA, Razhev DI, Richards MP, Peristov NV, Lachmann M, Douka K, Higham TF, Slatkin M, Hublin JJ, Reich D, Kelso J, Viola TB, Pääbo S.

Nature. 2014 Oct 23;514(7523):445-9. doi: 10.1038/nature13810.

21.

The projection of a test genome onto a reference population and applications to humans and archaic hominins.

Yang MA, Harris K, Slatkin M.

Genetics. 2014 Dec;198(4):1655-70. doi: 10.1534/genetics.112.145359. Epub 2014 Oct 15.

22.

Ancient human genomes suggest three ancestral populations for present-day Europeans.

Lazaridis I, Patterson N, Mittnik A, Renaud G, Mallick S, Kirsanow K, Sudmant PH, Schraiber JG, Castellano S, Lipson M, Berger B, Economou C, Bollongino R, Fu Q, Bos KI, Nordenfelt S, Li H, de Filippo C, Prüfer K, Sawyer S, Posth C, Haak W, Hallgren F, Fornander E, Rohland N, Delsate D, Francken M, Guinet JM, Wahl J, Ayodo G, Babiker HA, Bailliet G, Balanovska E, Balanovsky O, Barrantes R, Bedoya G, Ben-Ami H, Bene J, Berrada F, Bravi CM, Brisighelli F, Busby GB, Cali F, Churnosov M, Cole DE, Corach D, Damba L, van Driem G, Dryomov S, Dugoujon JM, Fedorova SA, Gallego Romero I, Gubina M, Hammer M, Henn BM, Hervig T, Hodoglugil U, Jha AR, Karachanak-Yankova S, Khusainova R, Khusnutdinova E, Kittles R, Kivisild T, Klitz W, Kučinskas V, Kushniarevich A, Laredj L, Litvinov S, Loukidis T, Mahley RW, Melegh B, Metspalu E, Molina J, Mountain J, Näkkäläjärvi K, Nesheva D, Nyambo T, Osipova L, Parik J, Platonov F, Posukh O, Romano V, Rothhammer F, Rudan I, Ruizbakiev R, Sahakyan H, Sajantila A, Salas A, Starikovskaya EB, Tarekegn A, Toncheva D, Turdikulova S, Uktveryte I, Utevska O, Vasquez R, Villena M, Voevoda M, Winkler CA, Yepiskoposyan L, Zalloua P, Zemunik T, Cooper A, Capelli C, Thomas MG, Ruiz-Linares A, Tishkoff SA, Singh L, Thangaraj K, Villems R, Comas D, Sukernik R, Metspalu M, Meyer M, Eichler EE, Burger J, Slatkin M, Pääbo S, Kelso J, Reich D, Krause J.

Nature. 2014 Sep 18;513(7518):409-13. doi: 10.1038/nature13673.

23.

A test for ancient selective sweeps and an application to candidate sites in modern humans.

Racimo F, Kuhlwilm M, Slatkin M.

Mol Biol Evol. 2014 Dec;31(12):3344-58. doi: 10.1093/molbev/msu255. Epub 2014 Aug 28.

24.

Tracing pastoralist migrations to southern Africa with lactase persistence alleles.

Macholdt E, Lede V, Barbieri C, Mpoloka SW, Chen H, Slatkin M, Pakendorf B, Stoneking M.

Curr Biol. 2014 Apr 14;24(8):875-9. doi: 10.1016/j.cub.2014.03.027. Epub 2014 Apr 3.

25.

The complete genome sequence of a Neanderthal from the Altai Mountains.

Prüfer K, Racimo F, Patterson N, Jay F, Sankararaman S, Sawyer S, Heinze A, Renaud G, Sudmant PH, de Filippo C, Li H, Mallick S, Dannemann M, Fu Q, Kircher M, Kuhlwilm M, Lachmann M, Meyer M, Ongyerth M, Siebauer M, Theunert C, Tandon A, Moorjani P, Pickrell J, Mullikin JC, Vohr SH, Green RE, Hellmann I, Johnson PL, Blanche H, Cann H, Kitzman JO, Shendure J, Eichler EE, Lein ES, Bakken TE, Golovanova LV, Doronichev VB, Shunkov MV, Derevianko AP, Viola B, Slatkin M, Reich D, Kelso J, Pääbo S.

Nature. 2014 Jan 2;505(7481):43-9. doi: 10.1038/nature12886. Epub 2013 Dec 18.

26.

Detecting range expansions from genetic data.

Peter BM, Slatkin M.

Evolution. 2013 Nov;67(11):3274-89. doi: 10.1111/evo.12202. Epub 2013 Aug 27.

27.

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus.

Frantz LA, Schraiber JG, Madsen O, Megens HJ, Bosse M, Paudel Y, Semiadi G, Meijaard E, Li N, Crooijmans RP, Archibald AL, Slatkin M, Schook LB, Larson G, Groenen MA.

Genome Biol. 2013;14(9):R107.

28.

A method for estimating the effective number of loci affecting a quantitative character.

Slatkin M.

Theor Popul Biol. 2013 Nov;89:44-54. doi: 10.1016/j.tpb.2013.08.002. Epub 2013 Aug 22.

29.

The influence of relatives on the efficiency and error rate of familial searching.

Rohlfs RV, Murphy E, Song YS, Slatkin M.

PLoS One. 2013 Aug 14;8(8):e70495. doi: 10.1371/journal.pone.0070495. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/2544c2e3-0065-4d14-ab1c-3d3fcb0fee84.

30.

Inferring selection intensity and allele age from multilocus haplotype structure.

Chen H, Slatkin M.

G3 (Bethesda). 2013 Aug 7;3(8):1429-42. doi: 10.1534/g3.113.006197.

31.

Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution.

Cahill JA, Green RE, Fulton TL, Stiller M, Jay F, Ovsyanikov N, Salamzade R, St John J, Stirling I, Slatkin M, Shapiro B.

PLoS Genet. 2013;9(3):e1003345. doi: 10.1371/journal.pgen.1003345. Epub 2013 Mar 14.

32.

Higher levels of neanderthal ancestry in East Asians than in Europeans.

Wall JD, Yang MA, Jay F, Kim SK, Durand EY, Stevison LS, Gignoux C, Woerner A, Hammer MF, Slatkin M.

Genetics. 2013 May;194(1):199-209. doi: 10.1534/genetics.112.148213. Epub 2013 Feb 14.

33.

A sequence-based approach demonstrates that balancing selection in classical human leukocyte antigen (HLA) loci is asymmetric.

Bronson PG, Mack SJ, Erlich HA, Slatkin M.

Hum Mol Genet. 2013 Jan 15;22(2):252-61. doi: 10.1093/hmg/dds424. Epub 2012 Oct 12.

34.

Genomic tests of variation in inbreeding among individuals and among chromosomes.

Schraiber JG, Shih S, Slatkin M.

Genetics. 2012 Dec;192(4):1477-82. doi: 10.1534/genetics.112.145367. Epub 2012 Oct 10.

35.

Paleopopulation genetics.

Wall JD, Slatkin M.

Annu Rev Genet. 2012;46:635-49. doi: 10.1146/annurev-genet-110711-155557. Epub 2012 Sep 17. Review.

36.

A high-coverage genome sequence from an archaic Denisovan individual.

Meyer M, Kircher M, Gansauge MT, Li H, Racimo F, Mallick S, Schraiber JG, Jay F, Prüfer K, de Filippo C, Sudmant PH, Alkan C, Fu Q, Do R, Rohland N, Tandon A, Siebauer M, Green RE, Bryc K, Briggs AW, Stenzel U, Dabney J, Shendure J, Kitzman J, Hammer MF, Shunkov MV, Derevianko AP, Patterson N, Andrés AM, Eichler EE, Slatkin M, Reich D, Kelso J, Pääbo S.

Science. 2012 Oct 12;338(6104):222-6. doi: 10.1126/science.1224344. Epub 2012 Aug 30.

37.

Estimating allele age and selection coefficient from time-serial data.

Malaspinas AS, Malaspinas O, Evans SN, Slatkin M.

Genetics. 2012 Oct;192(2):599-607. doi: 10.1534/genetics.112.140939. Epub 2012 Jul 30.

38.

Ancient structure in Africa unlikely to explain Neanderthal and non-African genetic similarity.

Yang MA, Malaspinas AS, Durand EY, Slatkin M.

Mol Biol Evol. 2012 Oct;29(10):2987-95. Epub 2012 Apr 18.

39.

Serial founder effects during range expansion: a spatial analog of genetic drift.

Slatkin M, Excoffier L.

Genetics. 2012 May;191(1):171-81. doi: 10.1534/genetics.112.139022. Epub 2012 Feb 23.

40.

Using known QTLs to detect directional epistatic interactions.

Slatkin M, Kirkpatrick M.

Genet Res (Camb). 2012 Feb;94(1):39-48. doi: 10.1017/S0016672312000043.

41.

Evolution of patterns on Conus shells.

Gong Z, Matzke NJ, Ermentrout B, Song D, Vendetti JE, Slatkin M, Oster G.

Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):E234-41. doi: 10.1073/pnas.1119859109. Epub 2012 Jan 4.

42.

Testing for ancient admixture between closely related populations.

Durand EY, Patterson N, Reich D, Slatkin M.

Mol Biol Evol. 2011 Aug;28(8):2239-52. doi: 10.1093/molbev/msr048. Epub 2011 Feb 15.

43.

Match probabilities in a finite, subdivided population.

Malaspinas AS, Slatkin M, Song YS.

Theor Popul Biol. 2011 May;79(3):55-63. doi: 10.1016/j.tpb.2011.01.003. Epub 2011 Jan 23.

44.

Genetic history of an archaic hominin group from Denisova Cave in Siberia.

Reich D, Green RE, Kircher M, Krause J, Patterson N, Durand EY, Viola B, Briggs AW, Stenzel U, Johnson PL, Maricic T, Good JM, Marques-Bonet T, Alkan C, Fu Q, Mallick S, Li H, Meyer M, Eichler EE, Stoneking M, Richards M, Talamo S, Shunkov MV, Derevianko AP, Hublin JJ, Kelso J, Slatkin M, Pääbo S.

Nature. 2010 Dec 23;468(7327):1053-60. doi: 10.1038/nature09710.

45.

General epistatic models of the risk of complex diseases.

Song YS, Wang F, Slatkin M.

Genetics. 2010 Dec;186(4):1467-73. doi: 10.1534/genetics.110.119008. Epub 2010 Sep 20.

46.

A draft sequence of the Neandertal genome.

Green RE, Krause J, Briggs AW, Maricic T, Stenzel U, Kircher M, Patterson N, Li H, Zhai W, Fritz MH, Hansen NF, Durand EY, Malaspinas AS, Jensen JD, Marques-Bonet T, Alkan C, Prüfer K, Meyer M, Burbano HA, Good JM, Schultz R, Aximu-Petri A, Butthof A, Höber B, Höffner B, Siegemund M, Weihmann A, Nusbaum C, Lander ES, Russ C, Novod N, Affourtit J, Egholm M, Verna C, Rudan P, Brajkovic D, Kucan Ž, Gušic I, Doronichev VB, Golovanova LV, Lalueza-Fox C, de la Rasilla M, Fortea J, Rosas A, Schmitz RW, Johnson PLF, Eichler EE, Falush D, Birney E, Mullikin JC, Slatkin M, Nielsen R, Kelso J, Lachmann M, Reich D, Pääbo S.

Science. 2010 May 7;328(5979):710-722. doi: 10.1126/science.1188021.

47.

Founder mutation(s) in the RSPH9 gene leading to primary ciliary dyskinesia in two inbred Bedouin families.

Reish O, Slatkin M, Chapman-Shimshoni D, Elizur A, Chioza B, Castleman V, Mitchison HM.

Ann Hum Genet. 2010 Mar;74(2):117-25. doi: 10.1111/j.1469-1809.2009.00559.x. Epub 2010 Jan 8.

48.

Time for DNA disclosure.

Krane DE, Bahn V, Balding D, Barlow B, Cash H, Desportes BL, D'Eustachio P, Devlin K, Doom TE, Dror I, Ford S, Funk C, Gilder J, Hampikian G, Inman K, Jamieson A, Kent PE, Koppl R, Kornfield I, Krimsky S, Mnookin J, Mueller L, Murphy E, Paoletti DR, Petrov DA, Raymer M, Risinger DM, Roth A, Rudin N, Shields W, Siegel JA, Slatkin M, Song YS, Speed T, Spiegelman C, Sullivan P, Swienton AR, Tarpey T, Thompson WC, Ungvarsky E, Zabell S.

Science. 2009 Dec 18;326(5960):1631-2. doi: 10.1126/science.326.5960.1631. No abstract available.

PMID:
20019271
49.

Finding the missing heritability of complex diseases.

Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, McCarthy MI, Ramos EM, Cardon LR, Chakravarti A, Cho JH, Guttmacher AE, Kong A, Kruglyak L, Mardis E, Rotimi CN, Slatkin M, Valle D, Whittemore AS, Boehnke M, Clark AG, Eichler EE, Gibson G, Haines JL, Mackay TF, McCarroll SA, Visscher PM.

Nature. 2009 Oct 8;461(7265):747-53. doi: 10.1038/nature08494. Review.

50.

Inference of microbial recombination rates from metagenomic data.

Johnson PL, Slatkin M.

PLoS Genet. 2009 Oct;5(10):e1000674. doi: 10.1371/journal.pgen.1000674. Epub 2009 Oct 2.

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