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Items: 30

1.

Blood transcriptomic markers of Mycobacterium tuberculosis load in sputum.

Dupnik KM, Bean JM, Lee MH, Jean Juste MA, Skrabanek L, Rivera V, Vorkas CK, Pape JW, Fitzgerald DW, Glickman M.

Int J Tuberc Lung Dis. 2018 Aug 1;22(8):950-958. doi: 10.5588/ijtld.17.0855.

PMID:
29991407
2.

Structural Mapping and Functional Characterization of Zebrafish Class B G-Protein Coupled Receptor (GPCR) with Dual Ligand Selectivity towards GLP-1 and Glucagon.

Oren DA, Wei Y, Skrabanek L, Chow BK, Mommsen T, Mojsov S.

PLoS One. 2016 Dec 8;11(12):e0167718. doi: 10.1371/journal.pone.0167718. eCollection 2016.

3.

Features of Circulating Parainfluenza Virus Required for Growth in Human Airway.

Palermo LM, Uppal M, Skrabanek L, Zumbo P, Germer S, Toussaint NC, Rima BK, Huey D, Niewiesk S, Porotto M, Moscona A.

MBio. 2016 Mar 15;7(2):e00235. doi: 10.1128/mBio.00235-16.

4.

Multiple SNPs in intron 41 of thyroglobulin gene are associated with autoimmune thyroid disease in the Japanese population.

Ban Y, Tozaki T, Taniyama M, Skrabanek L, Nakano Y, Ban Y, Hirano T.

PLoS One. 2012;7(5):e37501. doi: 10.1371/journal.pone.0037501. Epub 2012 May 25.

5.

Novel variant of thyroglobulin promoter triggers thyroid autoimmunity through an epigenetic interferon alpha-modulated mechanism.

Stefan M, Jacobson EM, Huber AK, Greenberg DA, Li CW, Skrabanek L, Conception E, Fadlalla M, Ho K, Tomer Y.

J Biol Chem. 2011 Sep 9;286(36):31168-79. doi: 10.1074/jbc.M111.247510. Epub 2011 Jul 12.

6.

Aberrant DNA hypermethylation signature in acute myeloid leukemia directed by EVI1.

Lugthart S, Figueroa ME, Bindels E, Skrabanek L, Valk PJ, Li Y, Meyer S, Erpelinck-Verschueren C, Greally J, Löwenberg B, Melnick A, Delwel R.

Blood. 2011 Jan 6;117(1):234-41. doi: 10.1182/blood-2010-04-281337. Epub 2010 Sep 20.

7.

GPCR-OKB: the G Protein Coupled Receptor Oligomer Knowledge Base.

Khelashvili G, Dorff K, Shan J, Camacho-Artacho M, Skrabanek L, Vroling B, Bouvier M, Devi LA, George SR, Javitch JA, Lohse MJ, Milligan G, Neubig RR, Palczewski K, Parmentier M, Pin JP, Vriend G, Campagne F, Filizola M.

Bioinformatics. 2010 Jul 15;26(14):1804-5. doi: 10.1093/bioinformatics/btq264. Epub 2010 May 25.

8.

DNA methylation signatures identify biologically distinct subtypes in acute myeloid leukemia.

Figueroa ME, Lugthart S, Li Y, Erpelinck-Verschueren C, Deng X, Christos PJ, Schifano E, Booth J, van Putten W, Skrabanek L, Campagne F, Mazumdar M, Greally JM, Valk PJ, Löwenberg B, Delwel R, Melnick A.

Cancer Cell. 2010 Jan 19;17(1):13-27. doi: 10.1016/j.ccr.2009.11.020. Epub 2010 Jan 7.

9.

Employing a recombinant HLA-DR3 expression system to dissect major histocompatibility complex II-thyroglobulin peptide dynamism: a genetic, biochemical, and reverse immunological perspective.

Jacobson EM, Yang H, Menconi F, Wang R, Osman R, Skrabanek L, Li CW, Fadlalla M, Gandhi A, Chaturvedi V, Smith EP, Schwemberger S, Osterburg A, Babcock GF, Tomer Y.

J Biol Chem. 2009 Dec 4;284(49):34231-43. doi: 10.1074/jbc.M109.041574. Epub 2009 Sep 23.

10.

MDS and secondary AML display unique patterns and abundance of aberrant DNA methylation.

Figueroa ME, Skrabanek L, Li Y, Jiemjit A, Fandy TE, Paietta E, Fernandez H, Tallman MS, Greally JM, Carraway H, Licht JD, Gore SD, Melnick A.

Blood. 2009 Oct 15;114(16):3448-58. doi: 10.1182/blood-2009-01-200519. Epub 2009 Aug 3.

11.

Genome-wide epigenetic analysis delineates a biologically distinct immature acute leukemia with myeloid/T-lymphoid features.

Figueroa ME, Wouters BJ, Skrabanek L, Glass J, Li Y, Erpelinck-Verschueren CA, Langerak AW, Löwenberg B, Fazzari M, Greally JM, Valk PJ, Melnick A, Delwel R.

Blood. 2009 Mar 19;113(12):2795-804. doi: 10.1182/blood-2008-08-172387. Epub 2009 Jan 23.

12.

Stability of eukaryotic translation initiation factor 4E mRNA is regulated by HuR, and this activity is dysregulated in cancer.

Topisirovic I, Siddiqui N, Orolicki S, Skrabanek LA, Tremblay M, Hoang T, Borden KL.

Mol Cell Biol. 2009 Mar;29(5):1152-62. doi: 10.1128/MCB.01532-08. Epub 2008 Dec 29.

13.

Beyond tissueInfo: functional prediction using tissue expression profile similarity searches.

Aguilar D, Skrabanek L, Gross SS, Oliva B, Campagne F.

Nucleic Acids Res. 2008 Jun;36(11):3728-37. doi: 10.1093/nar/gkn233. Epub 2008 May 15.

14.

Scan2S: increasing the precision of PROSITE pattern motifs using secondary structure constraints.

Skrabanek L, Niv MY.

Proteins. 2008 Sep;72(4):1138-47. doi: 10.1002/prot.22008.

PMID:
18320586
15.

Computational prediction of protein-protein interactions.

Skrabanek L, Saini HK, Bader GD, Enright AJ.

Mol Biotechnol. 2008 Jan;38(1):1-17. Epub 2007 Aug 14. Review.

PMID:
18095187
17.

Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base.

Skrabanek L, Murcia M, Bouvier M, Devi L, George SR, Lohse MJ, Milligan G, Neubig R, Palczewski K, Parmentier M, Pin JP, Vriend G, Javitch JA, Campagne F, Filizola M.

BMC Bioinformatics. 2007 May 30;8:177.

18.

Modeling activated states of GPCRs: the rhodopsin template.

Niv MY, Skrabanek L, Filizola M, Weinstein H.

J Comput Aided Mol Des. 2006 Jul-Aug;20(7-8):437-48. Epub 2006 Nov 11. Erratum in: J Comput Aided Mol Des. 2007 Jul;21(7):419.

19.

Mining expressed sequence tags identifies cancer markers of clinical interest.

Campagne F, Skrabanek L.

BMC Bioinformatics. 2006 Nov 1;7:481.

20.

eIF4E is a central node of an RNA regulon that governs cellular proliferation.

Culjkovic B, Topisirovic I, Skrabanek L, Ruiz-Gutierrez M, Borden KL.

J Cell Biol. 2006 Nov 6;175(3):415-26. Epub 2006 Oct 30.

21.

eIF4E promotes nuclear export of cyclin D1 mRNAs via an element in the 3'UTR.

Culjkovic B, Topisirovic I, Skrabanek L, Ruiz-Gutierrez M, Borden KL.

J Cell Biol. 2005 Apr 25;169(2):245-56. Epub 2005 Apr 18.

22.

PDZBase: a protein-protein interaction database for PDZ-domains.

Beuming T, Skrabanek L, Niv MY, Mukherjee P, Weinstein H.

Bioinformatics. 2005 Mar;21(6):827-8. Epub 2004 Oct 28.

PMID:
15513994
23.

Quantitative information management for the biochemical computation of cellular networks.

Campagne F, Neves S, Chang CW, Skrabanek L, Ram PT, Iyengar R, Weinstein H.

Sci STKE. 2004 Aug 24;2004(248):pl11.

PMID:
15340175
24.

Characterization of the mouse adeno-associated virus AAVS1 ortholog.

Dutheil N, Yoon-Robarts M, Ward P, Henckaerts E, Skrabanek L, Berns KI, Campagne F, Linden RM.

J Virol. 2004 Aug;78(16):8917-21.

25.

Amino acid substitutions in the thyroglobulin gene are associated with susceptibility to human and murine autoimmune thyroid disease.

Ban Y, Greenberg DA, Concepcion E, Skrabanek L, Villanueva R, Tomer Y.

Proc Natl Acad Sci U S A. 2003 Dec 9;100(25):15119-24. Epub 2003 Dec 1.

26.

Building protein diagrams on the web with the residue-based diagram editor RbDe.

Skrabanek L, Campagne F, Weinstein H.

Nucleic Acids Res. 2003 Jul 1;31(13):3856-8.

27.

The proline-rich homeodomain protein, PRH, is a tissue-specific inhibitor of eIF4E-dependent cyclin D1 mRNA transport and growth.

Topisirovic I, Culjkovic B, Cohen N, Perez JM, Skrabanek L, Borden KL.

EMBO J. 2003 Feb 3;22(3):689-703.

28.

TissueInfo: high-throughput identification of tissue expression profiles and specificity.

Skrabanek L, Campagne F.

Nucleic Acids Res. 2001 Nov 1;29(21):E102-2.

29.

Estimation of synteny conservation and genome compaction between pufferfish (Fugu) and human.

McLysaght A, Enright AJ, Skrabanek L, Wolfe KH.

Yeast. 2000 Apr;17(1):22-36.

30.

Eukaryote genome duplication - where's the evidence?

Skrabanek L, Wolfe KH.

Curr Opin Genet Dev. 1998 Dec;8(6):694-700. Review.

PMID:
9914206

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