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Items: 18

1.

Complete Genome Sequence of the Predatory Bacterium Ensifer adhaerens Casida A.

Williams LE, Baltrus DA, O'Donnell SD, Skelly TJ, Martin MO.

Genome Announc. 2017 Nov 22;5(47). pii: e01344-17. doi: 10.1128/genomeA.01344-17.

2.

Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads.

Liang M, Raley C, Zheng X, Kutty G, Gogineni E, Sherman BT, Sun Q, Chen X, Skelly T, Jones K, Stephens R, Zhou B, Lau W, Johnson C, Imamichi T, Jiang M, Dewar R, Lempicki RA, Tran B, Kovacs JA, Huang DW.

BioData Min. 2016 Apr 5;9:13. doi: 10.1186/s13040-016-0090-8. eCollection 2016.

3.

Towards Better Precision Medicine: PacBio Single-Molecule Long Reads Resolve the Interpretation of HIV Drug Resistant Mutation Profiles at Explicit Quasispecies (Haplotype) Level.

Huang DW, Raley C, Jiang MK, Zheng X, Liang D, Rehman MT, Highbarger HC, Jiao X, Sherman B, Ma L, Chen X, Skelly T, Troyer J, Stephens R, Imamichi T, Pau A, Lempicki RA, Tran B, Nissley D, Lane HC, Dewar RL.

J Data Mining Genomics Proteomics. 2016 Jan;7(1). pii: 182. Epub 2015 Nov 8.

4.

Comprehensive Molecular Characterization of Papillary Renal-Cell Carcinoma.

Cancer Genome Atlas Research Network, Linehan WM, Spellman PT, Ricketts CJ, Creighton CJ, Fei SS, Davis C, Wheeler DA, Murray BA, Schmidt L, Vocke CD, Peto M, Al Mamun AA, Shinbrot E, Sethi A, Brooks S, Rathmell WK, Brooks AN, Hoadley KA, Robertson AG, Brooks D, Bowlby R, Sadeghi S, Shen H, Weisenberger DJ, Bootwalla M, Baylin SB, Laird PW, Cherniack AD, Saksena G, Haake S, Li J, Liang H, Lu Y, Mills GB, Akbani R, Leiserson MD, Raphael BJ, Anur P, Bottaro D, Albiges L, Barnabas N, Choueiri TK, Czerniak B, Godwin AK, Hakimi AA, Ho TH, Hsieh J, Ittmann M, Kim WY, Krishnan B, Merino MJ, Mills Shaw KR, Reuter VE, Reznik E, Shelley CS, Shuch B, Signoretti S, Srinivasan R, Tamboli P, Thomas G, Tickoo S, Burnett K, Crain D, Gardner J, Lau K, Mallery D, Morris S, Paulauskis JD, Penny RJ, Shelton C, Shelton WT, Sherman M, Thompson E, Yena P, Avedon MT, Bowen J, Gastier-Foster JM, Gerken M, Leraas KM, Lichtenberg TM, Ramirez NC, Santos T, Wise L, Zmuda E, Demchok JA, Felau I, Hutter CM, Sheth M, Sofia HJ, Tarnuzzer R, Wang Z, Yang L, Zenklusen JC, Zhang J, Ayala B, Baboud J, Chudamani S, Liu J, Lolla L, Naresh R, Pihl T, Sun Q, Wan Y, Wu Y, Ally A, Balasundaram M, Balu S, Beroukhim R, Bodenheimer T, Buhay C, Butterfield YS, Carlsen R, Carter SL, Chao H, Chuah E, Clarke A, Covington KR, Dahdouli M, Dewal N, Dhalla N, Doddapaneni HV, Drummond JA, Gabriel SB, Gibbs RA, Guin R, Hale W, Hawes A, Hayes DN, Holt RA, Hoyle AP, Jefferys SR, Jones SJ, Jones CD, Kalra D, Kovar C, Lewis L, Li J, Ma Y, Marra MA, Mayo M, Meng S, Meyerson M, Mieczkowski PA, Moore RA, Morton D, Mose LE, Mungall AJ, Muzny D, Parker JS, Perou CM, Roach J, Schein JE, Schumacher SE, Shi Y, Simons JV, Sipahimalani P, Skelly T, Soloway MG, Sougnez C, Tam A, Tan D, Thiessen N, Veluvolu U, Wang M, Wilkerson MD, Wong T, Wu J, Xi L, Zhou J, Bedford J, Chen F, Fu Y, Gerstein M, Haussler D, Kasaian K, Lai P, Ling S, Radenbaugh A, Van Den Berg D, Weinstein JN, Zhu J, Albert M, Alexopoulou I, Andersen JJ, Auman JT, Bartlett J, Bastacky S, Bergsten J, Blute ML, Boice L, Bollag RJ, Boyd J, Castle E, Chen YB, Cheville JC, Curley E, Davies B, DeVolk A, Dhir R, Dike L, Eckman J, Engel J, Harr J, Hrebinko R, Huang M, Huelsenbeck-Dill L, Iacocca M, Jacobs B, Lobis M, Maranchie JK, McMeekin S, Myers J, Nelson J, Parfitt J, Parwani A, Petrelli N, Rabeno B, Roy S, Salner AL, Slaton J, Stanton M, Thompson RH, Thorne L, Tucker K, Weinberger PM, Winemiller C, Zach LA, Zuna R.

N Engl J Med. 2016 Jan 14;374(2):135-45. doi: 10.1056/NEJMoa1505917. Epub 2015 Nov 4.

5.

SASI-Seq: sample assurance Spike-Ins, and highly differentiating 384 barcoding for Illumina sequencing.

Quail MA, Smith M, Jackson D, Leonard S, Skelly T, Swerdlow HP, Gu Y, Ellis P.

BMC Genomics. 2014 Feb 7;15:110. doi: 10.1186/1471-2164-15-110.

6.

Analysis of context-dependent errors for illumina sequencing.

Abnizova I, Leonard S, Skelly T, Brown A, Jackson D, Gourtovaia M, Qi G, Te Boekhorst R, Faruque N, Lewis K, Cox T.

J Bioinform Comput Biol. 2012 Apr;10(2):1241005. doi: 10.1142/S0219720012410053.

PMID:
22809341
7.

Optimal enzymes for amplifying sequencing libraries.

Quail MA, Otto TD, Gu Y, Harris SR, Skelly TF, McQuillan JA, Swerdlow HP, Oyola SO.

Nat Methods. 2011 Dec 28;9(1):10-1. doi: 10.1038/nmeth.1814. No abstract available.

PMID:
22205512
8.

Statistical comparison of methods to estimate the error probability in short-read Illumina sequencing.

Abnizova I, Skelly T, Naumenko F, Whiteford N, Brown C, Cox T.

J Bioinform Comput Biol. 2010 Jun;8(3):579-91.

PMID:
20556863
9.

Swift: primary data analysis for the Illumina Solexa sequencing platform.

Whiteford N, Skelly T, Curtis C, Ritchie ME, Löhr A, Zaranek AW, Abnizova I, Brown C.

Bioinformatics. 2009 Sep 1;25(17):2194-9. doi: 10.1093/bioinformatics/btp383. Epub 2009 Jun 23.

10.

Model-based gene selection shows engrailed 1 is associated with antipsychotic response.

Webb BT, Sullivan PF, Skelly T, van den Oord EJ.

Pharmacogenet Genomics. 2008 Sep;18(9):751-9. doi: 10.1097/FPC.0b013e32830162bc.

PMID:
18698228
11.

Association of RGS2 and RGS5 variants with schizophrenia symptom severity.

Campbell DB, Lange LA, Skelly T, Lieberman J, Levitt P, Sullivan PF.

Schizophr Res. 2008 Apr;101(1-3):67-75. doi: 10.1016/j.schres.2008.01.006. Epub 2008 Feb 11.

12.

Ethnic stratification of the association of RGS4 variants with antipsychotic treatment response in schizophrenia.

Campbell DB, Ebert PJ, Skelly T, Stroup TS, Lieberman J, Levitt P, Sullivan PF.

Biol Psychiatry. 2008 Jan 1;63(1):32-41. Epub 2007 Jun 22.

13.

AKT1 and neurocognition in schizophrenia.

Pinheiro AP, Keefe RS, Skelly T, Olarte M, Leviel K, Lange LA, Lange EM, Stroup TS, Lieberman J, Sullivan PF.

Aust N Z J Psychiatry. 2007 Feb;41(2):169-77. Erratum in: Aust N Z J Psychiatry. 2009;43(10):983.

PMID:
17464696
14.

Is rs7566605, a SNP near INSIG2, associated with body mass in a randomized clinical trial of antipsychotics in schizophrenia?

Skelly T, Pinheiro AP, Lange LA, Sullivan PF.

Mol Psychiatry. 2007 Apr;12(4):321-2. No abstract available.

PMID:
17389899
15.

Revealing the role of glutathione S-transferase omega in age-at-onset of Alzheimer and Parkinson diseases.

Li YJ, Scott WK, Zhang L, Lin PI, Oliveira SA, Skelly T, Doraiswamy MP, Welsh-Bohmer KA, Martin ER, Haines JL, Pericak-Vance MA, Vance JM.

Neurobiol Aging. 2006 Aug;27(8):1087-93. Epub 2005 Jun 27.

16.

Association between the neuron-specific RNA-binding protein ELAVL4 and Parkinson disease.

Noureddine MA, Qin XJ, Oliveira SA, Skelly TJ, van der Walt J, Hauser MA, Pericak-Vance MA, Vance JM, Li YJ.

Hum Genet. 2005 Jun;117(1):27-33. Epub 2005 Apr 13.

PMID:
15827745
17.

PSYCHOLOGICAL BASES OF EXCESSIVE MILK INTAKE AND IRON DEFICIENCY ANEMIA DURING INFANCY.

WERKMAN SL, SHIFMAN L, SKELLY T.

Clin Proc Child Hosp Dist Columbia. 1964 Jul;20:181-8. No abstract available.

PMID:
14162973
18.

PSYCHOSOCIAL CORRELATES OF IRON DEFICIENCY ANEMIA IN EARLY CHILDHOOD.

WERKMAN SL, SHIFMAN L, SKELLY T.

Psychosom Med. 1964 Mar-Apr;26:125-34. No abstract available.

PMID:
14132974

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