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Items: 12

1.

Effects of graphene oxide and graphite on soil bacterial and fungal diversity.

Forstner C, Orton TG, Skarshewski A, Wang P, Kopittke PM, Dennis PG.

Sci Total Environ. 2019 Jun 25;671:140-148. doi: 10.1016/j.scitotenv.2019.03.360. Epub 2019 Mar 23.

PMID:
30928743
2.

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life.

Parks DH, Chuvochina M, Waite DW, Rinke C, Skarshewski A, Chaumeil PA, Hugenholtz P.

Nat Biotechnol. 2018 Nov;36(10):996-1004. doi: 10.1038/nbt.4229. Epub 2018 Aug 27.

PMID:
30148503
3.

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics.

Rinke C, Low S, Woodcroft BJ, Raina JB, Skarshewski A, Le XH, Butler MK, Stocker R, Seymour J, Tyson GW, Hugenholtz P.

PeerJ. 2016 Sep 22;4:e2486. doi: 10.7717/peerj.2486. eCollection 2016.

4.

Near complete genome sequence of the animal feed probiotic, Bacillus amyloliquefaciens H57.

Schofield BJ, Skarshewski A, Lachner N, Ouwerkerk D, Klieve AV, Dart P, Hugenholtz P.

Stand Genomic Sci. 2016 Sep 6;11(1):60. doi: 10.1186/s40793-016-0189-z. eCollection 2016.

5.

Genome-Based Microbial Taxonomy Coming of Age.

Hugenholtz P, Skarshewski A, Parks DH.

Cold Spring Harb Perspect Biol. 2016 Jun 1;8(6). pii: a018085. doi: 10.1101/cshperspect.a018085. Review.

6.

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.

Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW.

Microbiome. 2014 Apr 7;2:11. doi: 10.1186/2049-2618-2-11. eCollection 2014.

7.

uPEPperoni: an online tool for upstream open reading frame location and analysis of transcript conservation.

Skarshewski A, Stanton-Cook M, Huber T, Al Mansoori S, Smith R, Beatson SA, Rothnagel JA.

BMC Bioinformatics. 2014 Feb 1;15:36. doi: 10.1186/1471-2105-15-36.

8.

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes.

Albertsen M, Hugenholtz P, Skarshewski A, Nielsen KL, Tyson GW, Nielsen PH.

Nat Biotechnol. 2013 Jun;31(6):533-8. doi: 10.1038/nbt.2579. Epub 2013 May 26.

PMID:
23707974
9.

Complex evolutionary relationships among four classes of modular RNA-binding splicing regulators in eukaryotes: the hnRNP, SR, ELAV-like and CELF proteins.

Tang YH, Han SP, Kassahn KS, Skarshewski A, Rothnagel JA, Smith R.

J Mol Evol. 2012 Dec;75(5-6):214-28. doi: 10.1007/s00239-012-9533-0. Epub 2012 Nov 24.

PMID:
23179353
10.

Sequencing wheat chromosome arm 7BS delimits the 7BS/4AL translocation and reveals homoeologous gene conservation.

Berkman PJ, Skarshewski A, Manoli S, Lorenc MT, Stiller J, Smits L, Lai K, Campbell E, Kubaláková M, Simková H, Batley J, Doležel J, Hernandez P, Edwards D.

Theor Appl Genet. 2012 Feb;124(3):423-32. doi: 10.1007/s00122-011-1717-2. Epub 2011 Oct 15.

PMID:
22001910
11.

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS.

Berkman PJ, Skarshewski A, Lorenc MT, Lai K, Duran C, Ling EY, Stiller J, Smits L, Imelfort M, Manoli S, McKenzie M, Kubaláková M, Šimková H, Batley J, Fleury D, Doležel J, Edwards D.

Plant Biotechnol J. 2011 Sep;9(7):768-75. doi: 10.1111/j.1467-7652.2010.00587.x. Epub 2011 Feb 28.

12.

Functional implications of the emergence of alternative splicing in hnRNP A/B transcripts.

Han SP, Kassahn KS, Skarshewski A, Ragan MA, Rothnagel JA, Smith R.

RNA. 2010 Sep;16(9):1760-8. doi: 10.1261/rna.2142810. Epub 2010 Jul 22.

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