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Items: 1 to 50 of 79

1.

Genotype-Phenotype Correlations of Dystrophic Epidermolysis Bullosa in India: Experience from a Tertiary Care Centre.

Yenamandra VK, Vellarikkal SK, Chowdhury MR, Jayarajan R, Verma A, Scaria V, Sivasubbu S, Basu Ray S, Dinda AK, Kabra M, Sharma VK, Sethuraman G.

Acta Derm Venereol. 2018 Mar 27. doi: 10.2340/00015555-2929. [Epub ahead of print]

2.

A new strain of white spot syndrome virus affecting Litopenaeus vannamei in Indian shrimp farms.

Sivakumar S, Vimal S, Abdul Majeed S, Santhosh Kumar S, Taju G, Madan N, Rajkumar T, Thamizhvanan S, Shamsudheen KV, Scaria V, Sivasubbu S, Sahul Hameed AS.

J Fish Dis. 2018 Jul;41(7):1129-1146. doi: 10.1111/jfd.12811. Epub 2018 May 10.

PMID:
29745450
3.

A founder mutation MLC1 c.736delA associated with megalencephalic leukoencephalopathy with subcortical cysts-1 in north Indian kindred.

Vellarikkal SK, Jayarajan R, Verma A, Ravi R, Senthilvel V, Kumar A, Saini L, Gulati S, Lal M, Mathur A, Chhetri MK, Faruq M, Scaria V, Sivasubbu S.

Clin Genet. 2018 Aug;94(2):271-273. doi: 10.1111/cge.13251. Epub 2018 Apr 18. No abstract available.

PMID:
29667716
4.

Whole exome sequencing in a multi-generation family from India reveals a genetic variation c.10C>T (p.Gln4Ter) in keratin 5 gene associated with Dowling-Degos disease.

Virmani N, Vellarikkal SK, Verma A, Jayarajan R, Sakhiya J, Desai C, Sivasubbu S, Scaria V.

Indian J Dermatol Venereol Leprol. 2018 May-Jun;84(3):344-346. doi: 10.4103/ijdvl.IJDVL_268_17. No abstract available.

5.

Familial Hypertrophic Cardiomyopathy - Identification of cause and risk stratification through exome sequencing.

Biswas A, Das S, Kapoor M, Shamsudheen KV, Jayarajan R, Verma A, Seth S, Bhargava B, Scaria V, Sivasubbu S, Rao VR.

Gene. 2018 Jun 20;660:151-156. doi: 10.1016/j.gene.2018.03.062. Epub 2018 Mar 21.

PMID:
29572196
6.

Utility of whole exome sequencing in detecting novel compound heterozygous mutations in COL7A1 among families with severe recessive Dystrophic Epidermolysis Bullosa in India - implications on diagnosis, prognosis and prenatal testing.

Mahajan R, Vellarikkal SK, Handa S, Verma A, Jayarajan R, Kumar A, De D, Kaur J, Panigrahi I, VSl V, Sivasubbu S, Scaria V.

J Eur Acad Dermatol Venereol. 2018 Mar 6. doi: 10.1111/jdv.14909. [Epub ahead of print]

PMID:
29512197
7.

Organellar transcriptome sequencing reveals mitochondrial localization of nuclear encoded transcripts.

Sabharwal A, Sharma D, Vellarikkal SK, Jayarajan R, Verma A, Senthivel V, Scaria V, Sivasubbu S.

Mitochondrion. 2018 Feb 24. pii: S1567-7249(17)30106-X. doi: 10.1016/j.mito.2018.02.007. [Epub ahead of print]

PMID:
29486245
8.

A G-quadruplex motif at the 3' end of sgRNAs improves CRISPR-Cas9 based genome editing efficiency.

Nahar S, Sehgal P, Azhar M, Rai M, Singh A, Sivasubbu S, Chakraborty D, Maiti S.

Chem Commun (Camb). 2018 Mar 7;54(19):2377-2380. doi: 10.1039/c7cc08893k. Epub 2018 Feb 16.

PMID:
29450416
9.

RNA secondary structure profiling in zebrafish reveals unique regulatory features.

Kaushik K, Sivadas A, Vellarikkal SK, Verma A, Jayarajan R, Pandey S, Sethi T, Maiti S, Scaria V, Sivasubbu S.

BMC Genomics. 2018 Feb 15;19(1):147. doi: 10.1186/s12864-018-4497-0.

10.

STIM1 activation of adenylyl cyclase 6 connects Ca2+ and cAMP signaling during melanogenesis.

Motiani RK, Tanwar J, Raja DA, Vashisht A, Khanna S, Sharma S, Srivastava S, Sivasubbu S, Natarajan VT, Gokhale RS.

EMBO J. 2018 Mar 1;37(5). pii: e97597. doi: 10.15252/embj.201797597. Epub 2018 Jan 8.

PMID:
29311116
11.

Pharmacogenetic landscape of DPYD variants in south Asian populations by integration of genome-scale data.

Hariprakash JM, Vellarikkal SK, Keechilat P, Verma A, Jayarajan R, Dixit V, Ravi R, Senthivel V, Kumar A, Sehgal P, Sonakar AK, Ambawat S, Giri AK, Philip A, Sivadas A, Faruq M, Bharadwaj D, Sivasubbu S, Scaria V.

Pharmacogenomics. 2018 Feb;19(3):227-241. doi: 10.2217/pgs-2017-0101. Epub 2017 Dec 14.

PMID:
29239269
12.

Case Report: Whole exome sequencing identifies variation c.2308G>A p.E770K in RAG1 associated with B- T- NK+ severe combined immunodeficiency.

Govindaraj GM, Karuthedath Vellarikkal S, Jayarajan R, Ravi R, Verma A, Chakkiyar K, Jayakrishnan MP, Arakkal R, Raj R, Kunnaruvath R, Sivasubbu S, Scaria V.

Version 2. F1000Res. 2016 Oct 18 [revised 2017 Jan 1];5:2532. doi: 10.12688/f1000research.9473.2. eCollection 2016.

13.

Case Report: Whole exome sequencing identifies a novel frameshift insertion c.1325dupT (p.F442fsX2) in the tyrosine kinase domain of BTK gene in a young Indian individual with X-linked agammaglobulinemia.

Rawat A, Karuthedath Vellarikkal S, Verma A, Jayarajan R, Gupta A, Singh S, Chopra A, Kumar R, Scaria V, Sivasubbu S.

Version 2. F1000Res. 2016 Nov 14 [revised 2017 Jan 1];5:2667. doi: 10.12688/f1000research.9472.2. eCollection 2016.

14.

RNA sequencing of db/db mice liver identifies lncRNA H19 as a key regulator of gluconeogenesis and hepatic glucose output.

Goyal N, Sivadas A, Shamsudheen KV, Jayarajan R, Verma A, Sivasubbu S, Scaria V, Datta M.

Sci Rep. 2017 Aug 16;7(1):8312. doi: 10.1038/s41598-017-08281-7.

15.

Classical autophagy proteins LC3B and ATG4B facilitate melanosome movement on cytoskeletal tracks.

Ramkumar A, Murthy D, Raja DA, Singh A, Krishnan A, Khanna S, Vats A, Thukral L, Sharma P, Sivasubbu S, Rani R, Natarajan VT, Gokhale RS.

Autophagy. 2017 Aug 3;13(8):1331-1347. doi: 10.1080/15548627.2017.1327509. Epub 2017 Jun 9.

16.

Neuroanatomical demonstration of calbindin 2a- and calbindin 2b-like calcium binding proteins in the early embryonic development of zebrafish: mRNA study.

Bhoyar RC, Jadhao AG, Sivasubbu S, Singh AR, Sabharwal A, Palande NV, Biswas S.

Int J Dev Neurosci. 2017 Aug;60:26-33. doi: 10.1016/j.ijdevneu.2017.03.012. Epub 2017 Apr 8.

PMID:
28396290
17.

Effects of nicotine on zebrafish: A comparative response between a newly established gill cell line and whole gills.

Nathiga Nambi KS, Abdul Majeed S, Taju G, Sivasubbu S, Sarath Babu V, Sahul Hameed AS.

Comp Biochem Physiol C Toxicol Pharmacol. 2017 May;195:68-77. doi: 10.1016/j.cbpc.2017.02.013. Epub 2017 Feb 28.

PMID:
28257922
18.

Egyptian tale from India: application of whole-exome sequencing in diagnosis of atypical familial Mediterranean fever.

Sandhya P, Vellarikkal SK, Nair A, Ravi R, Mathew J, Jayarajan R, Kumar A, Verma A, Sivadas A, Danda D, Sivasubbu S, Scaria V.

Int J Rheum Dis. 2017 Nov;20(11):1770-1775. doi: 10.1111/1756-185X.13042. Epub 2017 Feb 17.

PMID:
28211254
19.

Application of whole exome sequencing in elucidating the phenotype and genotype spectrum of junctional epidermolysis bullosa: A preliminary experience of a tertiary care centre in India.

Yenamandra VK, Vellarikkal SK, Kumar M, Chowdhury MR, Jayarajan R, Verma A, Scaria V, Sivasubbu S, Ray SB, Dinda AK, Kabra M, Kaur P, Sharma VK, Sethuraman G.

J Dermatol Sci. 2017 Apr;86(1):30-36. doi: 10.1016/j.jdermsci.2016.12.020. Epub 2016 Dec 29.

PMID:
28087116
20.

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Katneni VK, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Dec 9;12(12):e1006500. doi: 10.1371/journal.pgen.1006500. eCollection 2016 Dec.

21.

Development of a clinical diagnostic matrix for characterizing inherited epidermolysis bullosa.

Yenamandra VK, Moss C, Sreenivas V, Khan M, Sivasubbu S, Sharma VK, Sethuraman G.

Br J Dermatol. 2017 Jun;176(6):1624-1632. doi: 10.1111/bjd.15221. Epub 2017 May 5.

PMID:
27925151
22.

Case Report: Whole exome sequencing reveals a novel frameshift deletion mutation p.G2254fs in COL7A1 associated with autosomal recessive dystrophic epidermolysis bullosa.

Karuthedath Vellarikkal S, Jayarajan R, Verma A, Nair S, Ravi R, Senthivel V, Sivasubbu S, Scaria V.

Version 2. F1000Res. 2016 May 17 [revised 2016 Jan 1];5:900. doi: 10.12688/f1000research.8380.2. eCollection 2016.

23.

Case Report: Application of whole exome sequencing for accurate diagnosis of rare syndromes of mineralocorticoid excess.

Narayanan R, Karuthedath Vellarikkal S, Jayarajan R, Verma A, Dixit V, Scaria V, Sivasubbu S.

Version 2. F1000Res. 2016 Jul 6 [revised 2017 Jan 1];5:1592. doi: 10.12688/f1000research.8779.2. eCollection 2016.

24.

Development of a fluorescent transgenic zebrafish biosensor for sensing aquatic heavy metal pollution.

Pawar N, Gireesh-Babu P, Sabnis S, Rasal K, Murthy R, Zaidi SG, Sivasubbu S, Chaudhari A.

Transgenic Res. 2016 Oct;25(5):617-27. doi: 10.1007/s11248-016-9959-z. Epub 2016 Apr 27.

PMID:
27120052
25.

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Kumar Katneni V, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Apr 15;12(4):e1005954. doi: 10.1371/journal.pgen.1005954. eCollection 2016 Apr. Erratum in: PLoS Genet. 2016 Dec 9;12 (12 ):e1006500.

26.

Aptamer-Assisted Detection of the Altered Expression of Estrogen Receptor Alpha in Human Breast Cancer.

Ahirwar R, Vellarikkal SK, Sett A, Sivasubbu S, Scaria V, Bora U, Borthakur BB, Kataki AC, Sharma JD, Nahar P.

PLoS One. 2016 Apr 4;11(4):e0153001. doi: 10.1371/journal.pone.0153001. eCollection 2016.

27.

Chamber Specific Gene Expression Landscape of the Zebrafish Heart.

Singh AR, Sivadas A, Sabharwal A, Vellarikal SK, Jayarajan R, Verma A, Kapoor S, Joshi A, Scaria V, Sivasubbu S.

PLoS One. 2016 Jan 27;11(1):e0147823. doi: 10.1371/journal.pone.0147823. eCollection 2016.

28.

Case Report: Whole exome sequencing helps in accurate molecular diagnosis in siblings with a rare co-occurrence of paternally inherited 22q12 duplication and autosomal recessive non-syndromic ichthyosis.

Gupta A, Sharma Y, Deo K, Vellarikkal S, Jayarajan R, Dixit V, Verma A, Scaria V, Sivasubbu S.

F1000Res. 2015 Jul 31;4:446. doi: 10.12688/f1000research.6779.1. eCollection 2015.

29.

zflncRNApedia: A Comprehensive Online Resource for Zebrafish Long Non-Coding RNAs.

Dhiman H, Kapoor S, Sivadas A, Sivasubbu S, Scaria V.

PLoS One. 2015 Jun 11;10(6):e0129997. doi: 10.1371/journal.pone.0129997. eCollection 2015.

30.

Screening currency notes for microbial pathogens and antibiotic resistance genes using a shotgun metagenomic approach.

Jalali S, Kohli S, Latka C, Bhatia S, Vellarikal SK, Sivasubbu S, Scaria V, Ramachandran S.

PLoS One. 2015 Jun 2;10(6):e0128711. doi: 10.1371/journal.pone.0128711. eCollection 2015.

31.

Exome sequencing of patients with histiocytoid cardiomyopathy reveals a de novo NDUFB11 mutation that plays a role in the pathogenesis of histiocytoid cardiomyopathy.

Shehata BM, Cundiff CA, Lee K, Sabharwal A, Lalwani MK, Davis AK, Agrawal V, Sivasubbu S, Iannucci GJ, Gibson G.

Am J Med Genet A. 2015 Sep;167A(9):2114-21. doi: 10.1002/ajmg.a.37138. Epub 2015 Apr 29.

32.

Comparative whole-genome analysis of clinical isolates reveals characteristic architecture of Mycobacterium tuberculosis pangenome.

Periwal V, Patowary A, Vellarikkal SK, Gupta A, Singh M, Mittal A, Jeyapaul S, Chauhan RK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch K, Chauhan DS, Sivasubbu S, Scaria V.

PLoS One. 2015 Apr 8;10(4):e0122979. doi: 10.1371/journal.pone.0122979. eCollection 2015.

33.

Erratum for Behera et al., Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India.

Behera BK, Das P, Maharana J, Paria P, Mandal SN, Meena DK, Sharma AP, Jayarajan R, Dixit V, Verma A, Vellarikkal SK, Scaria V, Sivasubbu S, Rao AR, Mohapatra T.

Genome Announc. 2015 Feb 19;3(1). pii: e00123-15. doi: 10.1128/genomeA.00123-15. No abstract available.

34.

mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets.

Vellarikkal SK, Dhiman H, Joshi K, Hasija Y, Sivasubbu S, Scaria V.

Hum Mutat. 2015 Apr;36(4):419-24. doi: 10.1002/humu.22767.

PMID:
25677119
35.

Whole-exome sequencing solves diagnostic dilemma in a rare case of sporadic acrokeratosis verruciformis.

Gupta A, Sharma YK, Vellarikkal SK, Jayarajan R, Dixit V, Verma A, Sivasubbu S, Scaria V.

J Eur Acad Dermatol Venereol. 2016 Apr;30(4):695-7. doi: 10.1111/jdv.12983. Epub 2015 Jan 26. No abstract available.

PMID:
25622760
36.

Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India.

Behera BK, Das P, Maharana J, Paria P, Mandal SN, Meena DK, Sharma AP, Jayarajan R, Dixit V, Verma A, Vellarikkal SK, Scaria V, Sivasubbu S, Rao AR, Mohapatra T.

Genome Announc. 2015 Jan 8;3(1). pii: e01321-14. doi: 10.1128/genomeA.01321-14.

37.

Development and use of retinal pigmented epithelial cell line from zebrafish (Danio rerio) for evaluating the toxicity of ultraviolet-B.

Nambi KS, Majeed SA, Taju G, Sivasubbu S, Raj NS, Madan N, Hameed AS.

Zebrafish. 2015 Feb;12(1):21-32. doi: 10.1089/zeb.2014.1012. Epub 2014 Dec 17.

PMID:
25517103
38.

Short stories on zebrafish long noncoding RNAs.

Haque S, Kaushik K, Leonard VE, Kapoor S, Sivadas A, Joshi A, Scaria V, Sivasubbu S.

Zebrafish. 2014 Dec;11(6):499-508. doi: 10.1089/zeb.2014.0994. Review.

39.

Non-coding RNA based regulation of blood vessel development in zebrafish and relevance to humans.

Sivasubbu S.

Mol Cytogenet. 2014 Jan 21;7(Suppl 1 Proceedings of the International Conference on Human):I10. doi: 10.1186/1755-8166-7-S1-I10. eCollection 2014. No abstract available.

40.

Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome.

Rajpathak SN, Vellarikkal SK, Patowary A, Scaria V, Sivasubbu S, Deobagkar DD.

PLoS One. 2014 Jun 16;9(6):e100076. doi: 10.1371/journal.pone.0100076. eCollection 2014.

41.

The Zebrafish GenomeWiki: a crowdsourcing approach to connect the long tail for zebrafish gene annotation.

Singh M, Bhartiya D, Maini J, Sharma M, Singh AR, Kadarkaraisamy S, Rana R, Sabharwal A, Nanda S, Ramachandran A, Mittal A, Kapoor S, Sehgal P, Asad Z, Kaushik K, Vellarikkal SK, Jagga D, Muthuswami M, Chauhan RK, Leonard E, Priyadarshini R, Halimani M, Malhotra S, Patowary A, Vishwakarma H, Joshi P, Bhardwaj V, Bhaumik A, Bhatt B, Jha A, Kumar A, Budakoti P, Lalwani MK, Meli R, Jalali S, Joshi K, Pal K, Dhiman H, Laddha SV, Jadhav V, Singh N, Pandey V, Sachidanandan C, Ekker SC, Klee EW, Scaria V, Sivasubbu S.

Database (Oxford). 2014 Feb 26;2014:bau011. doi: 10.1093/database/bau011. Print 2014.

42.

Draft Genome Sequence of Urease-Producing Sporosarcina pasteurii with Potential Application in Biocement Production.

Tiwari PK, Joshi K, Rehman R, Bhardwaj V, Shamsudheen KV, Sivasubbu S, Scaria V.

Genome Announc. 2014 Jan 30;2(1). pii: e01256-13. doi: 10.1128/genomeA.01256-13.

43.

Morphological effects of G-quadruplex stabilization using a small molecule in zebrafish.

Agarwal T, Lalwani MK, Kumar S, Roy S, Chakraborty TK, Sivasubbu S, Maiti S.

Biochemistry. 2014 Feb 25;53(7):1117-24. doi: 10.1021/bi4009352. Epub 2014 Feb 11.

PMID:
24476096
44.

Dynamic expression of long non-coding RNAs (lncRNAs) in adult zebrafish.

Kaushik K, Leonard VE, Kv S, Lalwani MK, Jalali S, Patowary A, Joshi A, Scaria V, Sivasubbu S.

PLoS One. 2013 Dec 31;8(12):e83616. doi: 10.1371/journal.pone.0083616. eCollection 2013.

45.

Exome sequencing reveals a novel mutation, p.L325H, in the KRT5 gene associated with autosomal dominant Epidermolysis Bullosa Simplex Koebner type in a large family from western India.

Vellarikkal SK, Patowary A, Singh M, Kumari R, Faruq M, Master DC, Sivasubbu S, Scaria V.

Hum Genome Var. 2014 Sep 4;1:14007. doi: 10.1038/hgv.2014.7. eCollection 2014.

46.

Time for the zebrafish ENCODE.

Sivasubbu S, Sachidanandan C, Scaria V.

J Genet. 2013 Dec;92(3):695-701.

47.

Draft Genome Sequence of a Multidrug-Resistant Clinical Isolate of Mycobacterium tuberculosis Belonging to a Novel Spoligotype.

Vellarikkal SK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch K; Open Source Drug Discovery Consortium, Chauhan DS, Sivasubbu S, Scaria V.

Genome Announc. 2013 Nov 21;1(6). pii: e00965-13. doi: 10.1128/genomeA.00965-13.

48.

Draft Genome Sequence of Multidrug-Resistant Mycobacterium tuberculosis Clinical Isolate OSDD515, Belonging to the Uganda I Genotype.

Vellarikkal SK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch K; Open Source Drug Discovery Consortium, Chauhan DS, Sivasubbu S, Scaria V.

Genome Announc. 2013 Nov 21;1(6). pii: e00750-13. doi: 10.1128/genomeA.00750-13.

49.

Draft Genome Sequence of an Extensively Drug-Resistant Mycobacterium tuberculosis Clinical Isolate of the Ural Strain OSDD493.

Karuthedath Vellarikkal S, Vir Singh A, Kumar Singh P, Garg P, Mohan Katoch V, Katoch K; Open Source Drug Discovery Consortium, Chauhan DS, Scaria V, Sivasubbu S.

Genome Announc. 2013 Nov 7;1(6). pii: e00928-13. doi: 10.1128/genomeA.00928-13.

50.

Systematic pharmacogenomics analysis of a Malay whole genome: proof of concept for personalized medicine.

Salleh MZ, Teh LK, Lee LS, Ismet RI, Patowary A, Joshi K, Pasha A, Ahmed AZ, Janor RM, Hamzah AS, Adam A, Yusoff K, Hoh BP, Hatta FH, Ismail MI, Scaria V, Sivasubbu S.

PLoS One. 2013 Aug 23;8(8):e71554. doi: 10.1371/journal.pone.0071554. eCollection 2013.

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