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Items: 1 to 50 of 94

1.

Role of Tmem163 in zinc-regulated insulin storage of MIN6 cells: Functional exploration of an Indian type 2 diabetes GWAS associated gene.

Chakraborty S, Vellarikkal SK, Sivasubbu S, Roy SS, Tandon N, Bharadwaj D.

Biochem Biophys Res Commun. 2019 Dec 5. pii: S0006-291X(19)32245-4. doi: 10.1016/j.bbrc.2019.11.117. [Epub ahead of print]

PMID:
31813547
2.

A Temporal Map of Gene Expression Pattern During Zebrafish Liver Regeneration.

Jagtap U, Sivadas A, Basu S, Verma A, Sivasubbu S, Scaria V, Sachidanandan C.

Zebrafish. 2019 Nov 26. doi: 10.1089/zeb.2019.1790. [Epub ahead of print]

PMID:
31770088
3.

pH-controlled histone acetylation amplifies melanocyte differentiation downstream of MITF.

Raja DA, Gotherwal V, Burse SA, Subramaniam YJ, Sultan F, Vats A, Gautam H, Sharma B, Sharma S, Singh A, Sivasubbu S, Gokhale RS, Natarajan VT.

EMBO Rep. 2020 Jan 7;21(1):e48333. doi: 10.15252/embr.201948333. Epub 2019 Nov 11.

PMID:
31709752
4.

Genomics of rare genetic diseases-experiences from India.

GUaRDIAN Consortium, Sivasubbu S, Scaria V.

Hum Genomics. 2019 Sep 25;14(1):52. doi: 10.1186/s40246-019-0215-5. Review.

5.

Saliva microbiome in primary Sjögren's syndrome reveals distinct set of disease-associated microbes.

Sharma D, Sandhya P, Vellarikkal SK, Surin AK, Jayarajan R, Verma A, Kumar A, Ravi R, Danda D, Sivasubbu S, Scaria V.

Oral Dis. 2019 Sep 12. doi: 10.1111/odi.13191. [Epub ahead of print]

PMID:
31514257
6.

Investigating Coronary Artery Disease methylome through targeted bisulfite sequencing.

Ghose S, Ghosh S, Tanwar VS, Tolani P, Kutum R, Sharma A, Bhardwaj N, Shamsudheen KV, Verma A, Jayarajan R, Dash D, Sivasubbu S, Scaria V, Seth S, Sengupta S.

Gene. 2019 Dec 30;721:144107. doi: 10.1016/j.gene.2019.144107. Epub 2019 Sep 6.

PMID:
31499127
7.

Loss of function mutation in the P2X7, a ligand-gated ion channel gene associated with hypertrophic cardiomyopathy.

Biswas A, Raza A, Das S, Kapoor M, Jayarajan R, Verma A, Shamsudheen KV, Murry B, Seth S, Bhargava B, Scaria V, Sivasubbu S, Rao VR.

Purinergic Signal. 2019 Jun;15(2):205-210. doi: 10.1007/s11302-019-09660-7. Epub 2019 May 31.

8.

A novel cathepsin D mutation in 2 siblings with late infantile neuronal ceroid lipofuscinosis.

Thottath J, Vellarikkal SK, Jayarajan R, Verma A, Manamel M, Singh A, Rajendran VR, Sivasubbu S, Scaria V.

Neurol Genet. 2019 Apr 11;5(3):e302. doi: 10.1212/NXG.0000000000000302. eCollection 2019 Jun. No abstract available.

9.

A genome-wide map of circular RNAs in adult zebrafish.

Sharma D, Sehgal P, Mathew S, Vellarikkal SK, Singh AR, Kapoor S, Jayarajan R, Scaria V, Sivasubbu S.

Sci Rep. 2019 Mar 5;9(1):3432. doi: 10.1038/s41598-019-39977-7.

10.

Methods to Study Long Noncoding RNA Expression and Dynamics in Zebrafish Using RNA Sequencing.

Mathew S, Sivadas A, Sehgal P, Kaushik K, Vellarikkal SK, Scaria V, Sivasubbu S.

Methods Mol Biol. 2019;1912:77-110. doi: 10.1007/978-1-4939-8982-9_4.

PMID:
30635891
11.

Methods for Annotation and Validation of Circular RNAs from RNAseq Data.

Sharma D, Sehgal P, Hariprakash J, Sivasubbu S, Scaria V.

Methods Mol Biol. 2019;1912:55-76. doi: 10.1007/978-1-4939-8982-9_3.

PMID:
30635890
12.

Knockdown of calcium-binding calb2a and calb2b genes indicates the key regulator of the early development of the zebrafish, Danio rerio.

Bhoyar RC, Jadhao AG, Sabharwal A, Ranjan G, Sivasubbu S, Pinelli C.

Brain Struct Funct. 2019 Mar;224(2):627-642. doi: 10.1007/s00429-018-1797-8. Epub 2018 Nov 20.

PMID:
30460553
13.

Identification of novel circadian transcripts in the zebrafish retina.

Ramasamy S, Sharma S, Iyengar BR, Vellarikkal SK, Sivasubbu S, Maiti S, Pillai B.

J Exp Biol. 2019 Jan 10;222(Pt 1). pii: jeb192195. doi: 10.1242/jeb.192195.

14.

Large scale changes in the transcriptome of Eisenia fetida during regeneration.

Bhambri A, Dhaunta N, Patel SS, Hardikar M, Bhatt A, Srikakulam N, Shridhar S, Vellarikkal S, Pandey R, Jayarajan R, Verma A, Kumar V, Gautam P, Khanna Y, Khan JA, Fromm B, Peterson KJ, Scaria V, Sivasubbu S, Pillai B.

PLoS One. 2018 Sep 27;13(9):e0204234. doi: 10.1371/journal.pone.0204234. eCollection 2018.

15.

SAGE: a comprehensive resource of genetic variants integrating South Asian whole genomes and exomes.

Hariprakash JM, Vellarikkal SK, Verma A, Ranawat AS, Jayarajan R, Ravi R, Kumar A, Dixit V, Sivadas A, Kashyap AK, Senthivel V, Sehgal P, Mahadevan V, Scaria V, Sivasubbu S.

Database (Oxford). 2018 Jan 1;2018:1-10. doi: 10.1093/database/bay080.

16.

Genotype-Phenotype Correlations of Dystrophic Epidermolysis Bullosa in India: Experience from a Tertiary Care Centre.

Yenamandra VK, Vellarikkal SK, Chowdhury MR, Jayarajan R, Verma A, Scaria V, Sivasubbu S, Ray SB, Dinda AK, Kabra M, Sharma VK, Sethuraman G.

Acta Derm Venereol. 2018 Oct 10;98(9):873-879. doi: 10.2340/00015555-2929.

17.

A new strain of white spot syndrome virus affecting Litopenaeus vannamei in Indian shrimp farms.

Sivakumar S, Vimal S, Abdul Majeed S, Santhosh Kumar S, Taju G, Madan N, Rajkumar T, Thamizhvanan S, Shamsudheen KV, Scaria V, Sivasubbu S, Sahul Hameed AS.

J Fish Dis. 2018 Jul;41(7):1129-1146. doi: 10.1111/jfd.12811. Epub 2018 May 10.

PMID:
29745450
18.

A founder mutation MLC1 c.736delA associated with megalencephalic leukoencephalopathy with subcortical cysts-1 in north Indian kindred.

Vellarikkal SK, Jayarajan R, Verma A, Ravi R, Senthilvel V, Kumar A, Saini L, Gulati S, Lal M, Mathur A, Chhetri MK, Faruq M, Scaria V, Sivasubbu S.

Clin Genet. 2018 Aug;94(2):271-273. doi: 10.1111/cge.13251. Epub 2018 Apr 18. No abstract available.

PMID:
29667716
19.

Whole exome sequencing in a multi-generation family from India reveals a genetic variation c.10C>T (p.Gln4Ter) in keratin 5 gene associated with Dowling-Degos disease.

Virmani N, Vellarikkal SK, Verma A, Jayarajan R, Sakhiya J, Desai C, Sivasubbu S, Scaria V.

Indian J Dermatol Venereol Leprol. 2018 May-Jun;84(3):344-346. doi: 10.4103/ijdvl.IJDVL_268_17. No abstract available.

20.

Familial Hypertrophic Cardiomyopathy - Identification of cause and risk stratification through exome sequencing.

Biswas A, Das S, Kapoor M, Shamsudheen KV, Jayarajan R, Verma A, Seth S, Bhargava B, Scaria V, Sivasubbu S, Rao VR.

Gene. 2018 Jun 20;660:151-156. doi: 10.1016/j.gene.2018.03.062. Epub 2018 Mar 21.

PMID:
29572196
21.

Utility of whole-exome sequencing in detecting novel compound heterozygous mutations in COL7A1 among families with severe recessive dystrophic epidermolysis bullosa in India - implications on diagnosis, prognosis and prenatal testing.

Mahajan R, Vellarikkal SK, Handa S, Verma A, Jayarajan R, Kumar A, De D, Kaur J, Panigrahi I, Vineeth VS, Sivasubbu S, Scaria V.

J Eur Acad Dermatol Venereol. 2018 Dec;32(12):e433-e435. doi: 10.1111/jdv.14909. Epub 2018 Aug 14. No abstract available.

PMID:
29512197
22.

Organellar transcriptome sequencing reveals mitochondrial localization of nuclear encoded transcripts.

Sabharwal A, Sharma D, Vellarikkal SK, Jayarajan R, Verma A, Senthivel V, Scaria V, Sivasubbu S.

Mitochondrion. 2019 May;46:59-68. doi: 10.1016/j.mito.2018.02.007. Epub 2018 Feb 24.

PMID:
29486245
23.

A G-quadruplex motif at the 3' end of sgRNAs improves CRISPR-Cas9 based genome editing efficiency.

Nahar S, Sehgal P, Azhar M, Rai M, Singh A, Sivasubbu S, Chakraborty D, Maiti S.

Chem Commun (Camb). 2018 Mar 7;54(19):2377-2380. doi: 10.1039/c7cc08893k. Epub 2018 Feb 16.

PMID:
29450416
24.

RNA secondary structure profiling in zebrafish reveals unique regulatory features.

Kaushik K, Sivadas A, Vellarikkal SK, Verma A, Jayarajan R, Pandey S, Sethi T, Maiti S, Scaria V, Sivasubbu S.

BMC Genomics. 2018 Feb 15;19(1):147. doi: 10.1186/s12864-018-4497-0.

25.

STIM1 activation of adenylyl cyclase 6 connects Ca2+ and cAMP signaling during melanogenesis.

Motiani RK, Tanwar J, Raja DA, Vashisht A, Khanna S, Sharma S, Srivastava S, Sivasubbu S, Natarajan VT, Gokhale RS.

EMBO J. 2018 Mar 1;37(5). pii: e97597. doi: 10.15252/embj.201797597. Epub 2018 Jan 8.

26.

Pharmacogenetic landscape of DPYD variants in south Asian populations by integration of genome-scale data.

Hariprakash JM, Vellarikkal SK, Keechilat P, Verma A, Jayarajan R, Dixit V, Ravi R, Senthivel V, Kumar A, Sehgal P, Sonakar AK, Ambawat S, Giri AK, Philip A, Sivadas A, Faruq M, Bharadwaj D, Sivasubbu S, Scaria V.

Pharmacogenomics. 2018 Feb;19(3):227-241. doi: 10.2217/pgs-2017-0101. Epub 2017 Dec 14.

PMID:
29239269
27.

Case Report: Whole exome sequencing identifies variation c.2308G>A p.E770K in RAG1 associated with B- T- NK+ severe combined immunodeficiency.

Govindaraj GM, Karuthedath Vellarikkal S, Jayarajan R, Ravi R, Verma A, Chakkiyar K, Jayakrishnan MP, Arakkal R, Raj R, Kunnaruvath R, Sivasubbu S, Scaria V.

Version 2. F1000Res. 2016 Oct 18 [revised 2017 Jan 1];5:2532. doi: 10.12688/f1000research.9473.2. eCollection 2016.

28.

Case Report: Whole exome sequencing identifies a novel frameshift insertion c.1325dupT (p.F442fsX2) in the tyrosine kinase domain of BTK gene in a young Indian individual with X-linked agammaglobulinemia.

Rawat A, Karuthedath Vellarikkal S, Verma A, Jayarajan R, Gupta A, Singh S, Chopra A, Kumar R, Scaria V, Sivasubbu S.

Version 2. F1000Res. 2016 Nov 14 [revised 2017 Jan 1];5:2667. doi: 10.12688/f1000research.9472.2. eCollection 2016.

29.

RNA sequencing of db/db mice liver identifies lncRNA H19 as a key regulator of gluconeogenesis and hepatic glucose output.

Goyal N, Sivadas A, Shamsudheen KV, Jayarajan R, Verma A, Sivasubbu S, Scaria V, Datta M.

Sci Rep. 2017 Aug 16;7(1):8312. doi: 10.1038/s41598-017-08281-7.

30.

Classical autophagy proteins LC3B and ATG4B facilitate melanosome movement on cytoskeletal tracks.

Ramkumar A, Murthy D, Raja DA, Singh A, Krishnan A, Khanna S, Vats A, Thukral L, Sharma P, Sivasubbu S, Rani R, Natarajan VT, Gokhale RS.

Autophagy. 2017 Aug 3;13(8):1331-1347. doi: 10.1080/15548627.2017.1327509. Epub 2017 Jun 9.

31.

Neuroanatomical demonstration of calbindin 2a- and calbindin 2b-like calcium binding proteins in the early embryonic development of zebrafish: mRNA study.

Bhoyar RC, Jadhao AG, Sivasubbu S, Singh AR, Sabharwal A, Palande NV, Biswas S.

Int J Dev Neurosci. 2017 Aug;60:26-33. doi: 10.1016/j.ijdevneu.2017.03.012. Epub 2017 Apr 8.

PMID:
28396290
32.

Effects of nicotine on zebrafish: A comparative response between a newly established gill cell line and whole gills.

Nathiga Nambi KS, Abdul Majeed S, Taju G, Sivasubbu S, Sarath Babu V, Sahul Hameed AS.

Comp Biochem Physiol C Toxicol Pharmacol. 2017 May;195:68-77. doi: 10.1016/j.cbpc.2017.02.013. Epub 2017 Feb 28.

PMID:
28257922
33.

Egyptian tale from India: application of whole-exome sequencing in diagnosis of atypical familial Mediterranean fever.

Sandhya P, Vellarikkal SK, Nair A, Ravi R, Mathew J, Jayarajan R, Kumar A, Verma A, Sivadas A, Danda D, Sivasubbu S, Scaria V.

Int J Rheum Dis. 2017 Nov;20(11):1770-1775. doi: 10.1111/1756-185X.13042. Epub 2017 Feb 17.

PMID:
28211254
34.

Application of whole exome sequencing in elucidating the phenotype and genotype spectrum of junctional epidermolysis bullosa: A preliminary experience of a tertiary care centre in India.

Yenamandra VK, Vellarikkal SK, Kumar M, Chowdhury MR, Jayarajan R, Verma A, Scaria V, Sivasubbu S, Ray SB, Dinda AK, Kabra M, Kaur P, Sharma VK, Sethuraman G.

J Dermatol Sci. 2017 Apr;86(1):30-36. doi: 10.1016/j.jdermsci.2016.12.020. Epub 2016 Dec 29.

PMID:
28087116
35.

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Katneni VK, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Dec 9;12(12):e1006500. doi: 10.1371/journal.pgen.1006500. eCollection 2016 Dec.

36.

Development of a clinical diagnostic matrix for characterizing inherited epidermolysis bullosa.

Yenamandra VK, Moss C, Sreenivas V, Khan M, Sivasubbu S, Sharma VK, Sethuraman G.

Br J Dermatol. 2017 Jun;176(6):1624-1632. doi: 10.1111/bjd.15221. Epub 2017 May 5.

PMID:
27925151
37.

Case Report: Whole exome sequencing reveals a novel frameshift deletion mutation p.G2254fs in COL7A1 associated with autosomal recessive dystrophic epidermolysis bullosa.

Karuthedath Vellarikkal S, Jayarajan R, Verma A, Nair S, Ravi R, Senthivel V, Sivasubbu S, Scaria V.

Version 2. F1000Res. 2016 May 17 [revised 2016 Jan 1];5:900. doi: 10.12688/f1000research.8380.2. eCollection 2016.

38.

Case Report: Application of whole exome sequencing for accurate diagnosis of rare syndromes of mineralocorticoid excess.

Narayanan R, Karuthedath Vellarikkal S, Jayarajan R, Verma A, Dixit V, Scaria V, Sivasubbu S.

Version 2. F1000Res. 2016 Jul 6 [revised 2017 Jan 1];5:1592. doi: 10.12688/f1000research.8779.2. eCollection 2016.

39.

Development of a fluorescent transgenic zebrafish biosensor for sensing aquatic heavy metal pollution.

Pawar N, Gireesh-Babu P, Sabnis S, Rasal K, Murthy R, Zaidi SG, Sivasubbu S, Chaudhari A.

Transgenic Res. 2016 Oct;25(5):617-27. doi: 10.1007/s11248-016-9959-z. Epub 2016 Apr 27.

PMID:
27120052
40.

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Kumar Katneni V, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Apr 15;12(4):e1005954. doi: 10.1371/journal.pgen.1005954. eCollection 2016 Apr. Erratum in: PLoS Genet. 2016 Dec 9;12 (12 ):e1006500.

41.

Aptamer-Assisted Detection of the Altered Expression of Estrogen Receptor Alpha in Human Breast Cancer.

Ahirwar R, Vellarikkal SK, Sett A, Sivasubbu S, Scaria V, Bora U, Borthakur BB, Kataki AC, Sharma JD, Nahar P.

PLoS One. 2016 Apr 4;11(4):e0153001. doi: 10.1371/journal.pone.0153001. eCollection 2016.

42.

Chamber Specific Gene Expression Landscape of the Zebrafish Heart.

Singh AR, Sivadas A, Sabharwal A, Vellarikal SK, Jayarajan R, Verma A, Kapoor S, Joshi A, Scaria V, Sivasubbu S.

PLoS One. 2016 Jan 27;11(1):e0147823. doi: 10.1371/journal.pone.0147823. eCollection 2016.

43.

Case Report: Whole exome sequencing helps in accurate molecular diagnosis in siblings with a rare co-occurrence of paternally inherited 22q12 duplication and autosomal recessive non-syndromic ichthyosis.

Gupta A, Sharma Y, Deo K, Vellarikkal S, Jayarajan R, Dixit V, Verma A, Scaria V, Sivasubbu S.

F1000Res. 2015 Jul 31;4:446. doi: 10.12688/f1000research.6779.1. eCollection 2015.

44.

zflncRNApedia: A Comprehensive Online Resource for Zebrafish Long Non-Coding RNAs.

Dhiman H, Kapoor S, Sivadas A, Sivasubbu S, Scaria V.

PLoS One. 2015 Jun 11;10(6):e0129997. doi: 10.1371/journal.pone.0129997. eCollection 2015.

45.

Screening currency notes for microbial pathogens and antibiotic resistance genes using a shotgun metagenomic approach.

Jalali S, Kohli S, Latka C, Bhatia S, Vellarikal SK, Sivasubbu S, Scaria V, Ramachandran S.

PLoS One. 2015 Jun 2;10(6):e0128711. doi: 10.1371/journal.pone.0128711. eCollection 2015.

46.

Exome sequencing of patients with histiocytoid cardiomyopathy reveals a de novo NDUFB11 mutation that plays a role in the pathogenesis of histiocytoid cardiomyopathy.

Shehata BM, Cundiff CA, Lee K, Sabharwal A, Lalwani MK, Davis AK, Agrawal V, Sivasubbu S, Iannucci GJ, Gibson G.

Am J Med Genet A. 2015 Sep;167A(9):2114-21. doi: 10.1002/ajmg.a.37138. Epub 2015 Apr 29.

47.

Comparative whole-genome analysis of clinical isolates reveals characteristic architecture of Mycobacterium tuberculosis pangenome.

Periwal V, Patowary A, Vellarikkal SK, Gupta A, Singh M, Mittal A, Jeyapaul S, Chauhan RK, Singh AV, Singh PK, Garg P, Katoch VM, Katoch K, Chauhan DS, Sivasubbu S, Scaria V.

PLoS One. 2015 Apr 8;10(4):e0122979. doi: 10.1371/journal.pone.0122979. eCollection 2015.

48.

Erratum for Behera et al., Draft Genome Sequence of the Extremely Halophilic Bacterium Halomonas salina Strain CIFRI1, Isolated from the East Coast of India.

Behera BK, Das P, Maharana J, Paria P, Mandal SN, Meena DK, Sharma AP, Jayarajan R, Dixit V, Verma A, Vellarikkal SK, Scaria V, Sivasubbu S, Rao AR, Mohapatra T.

Genome Announc. 2015 Feb 19;3(1). pii: e00123-15. doi: 10.1128/genomeA.00123-15. No abstract available.

49.

mit-o-matic: a comprehensive computational pipeline for clinical evaluation of mitochondrial variations from next-generation sequencing datasets.

Vellarikkal SK, Dhiman H, Joshi K, Hasija Y, Sivasubbu S, Scaria V.

Hum Mutat. 2015 Apr;36(4):419-24. doi: 10.1002/humu.22767.

PMID:
25677119
50.

Whole-exome sequencing solves diagnostic dilemma in a rare case of sporadic acrokeratosis verruciformis.

Gupta A, Sharma YK, Vellarikkal SK, Jayarajan R, Dixit V, Verma A, Sivasubbu S, Scaria V.

J Eur Acad Dermatol Venereol. 2016 Apr;30(4):695-7. doi: 10.1111/jdv.12983. Epub 2015 Jan 26. No abstract available.

PMID:
25622760

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