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Items: 45

1.

Evidence of Genetic Fecal Marker Interactions between Water Column and Periphyton in Artificial Streams.

Li X, Peed L, Sivaganesan M, Kelty CA, Nietch C, Shanks OC.

ACS Omega. 2018 Aug 29;3(8):10107-10113. doi: 10.1021/acsomega.8b01785. eCollection 2018 Aug 31.

2.

Large-scale implementation of standardized quantitative real-time PCR fecal source identification procedures in the Tillamook Bay Watershed.

Li X, Sivaganesan M, Kelty CA, Zimmer-Faust A, Clinton P, Reichman JR, Johnson Y, Matthews W, Bailey S, Shanks OC.

PLoS One. 2019 Jun 6;14(6):e0216827. doi: 10.1371/journal.pone.0216827. eCollection 2019.

3.

Evaluation of multiple laboratory performance and variability in analysis of recreational freshwaters by a rapid Escherichia coli qPCR method (Draft Method C).

Aw TG, Sivaganesan M, Briggs S, Dreelin E, Aslan A, Dorevitch S, Shrestha A, Isaacs N, Kinzelman J, Kleinheinz G, Noble R, Rediske R, Scull B, Rosenberg S, Weberman B, Sivy T, Southwell B, Siefring S, Oshima K, Haugland R.

Water Res. 2019 Jun 1;156:465-474. doi: 10.1016/j.watres.2019.03.014. Epub 2019 Mar 16.

PMID:
30953844
4.

Standardized data quality acceptance criteria for a rapid Escherichia coli qPCR method (Draft Method C) for water quality monitoring at recreational beaches.

Sivaganesan M, Aw TG, Briggs S, Dreelin E, Aslan A, Dorevitch S, Shrestha A, Isaacs N, Kinzelman J, Kleinheinz G, Noble R, Rediske R, Scull B, Rosenberg S, Weberman B, Sivy T, Southwell B, Siefring S, Oshima K, Haugland R.

Water Res. 2019 Jun 1;156:456-464. doi: 10.1016/j.watres.2019.03.011. Epub 2019 Mar 15.

PMID:
30952079
5.

Extended persistence of general and cattle-associated fecal indicators in marine and freshwater environment.

Korajkic A, McMinn BR, Ashbolt NJ, Sivaganesan M, Harwood VJ, Shanks OC.

Sci Total Environ. 2019 Feb 10;650(Pt 1):1292-1302. doi: 10.1016/j.scitotenv.2018.09.108. Epub 2018 Sep 9.

PMID:
30308816
6.

Quantification of plasmid DNA standards for U.S. EPA fecal indicator bacteria qPCR methods by droplet digital PCR analysis.

Sivaganesan M, Varma M, Siefring S, Haugland R.

J Microbiol Methods. 2018 Sep;152:135-142. doi: 10.1016/j.mimet.2018.07.005. Epub 2018 Jul 11.

7.

Incidence of somatic and F+ coliphage in Great Lake Basin recreational waters.

Wanjugi P, Sivaganesan M, Korajkic A, McMinn B, Kelty CA, Rhodes E, Cyterski M, Zepp R, Oshima K, Stachler E, Kinzelman J, Kurdas SR, Citriglia M, Hsu FC, Acrey B, Shanks OC.

Water Res. 2018 Sep 1;140:200-210. doi: 10.1016/j.watres.2018.04.055. Epub 2018 Apr 25.

PMID:
29715644
8.

A human fecal contamination score for ranking recreational sites using the HF183/BacR287 quantitative real-time PCR method.

Cao Y, Sivaganesan M, Kelty CA, Wang D, Boehm AB, Griffith JF, Weisberg SB, Shanks OC.

Water Res. 2018 Jan 1;128:148-156. doi: 10.1016/j.watres.2017.10.071. Epub 2017 Oct 31.

PMID:
29101858
9.

Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement.

Stachler E, Kelty C, Sivaganesan M, Li X, Bibby K, Shanks OC.

Environ Sci Technol. 2017 Aug 15;51(16):9146-9154. doi: 10.1021/acs.est.7b02703. Epub 2017 Jul 25.

PMID:
28700235
10.

Differential decomposition of bacterial and viral fecal indicators in common human pollution types.

Wanjugi P, Sivaganesan M, Korajkic A, Kelty CA, McMinn B, Ulrich R, Harwood VJ, Shanks OC.

Water Res. 2016 Nov 15;105:591-601. doi: 10.1016/j.watres.2016.09.041. Epub 2016 Sep 21.

PMID:
27693971
11.

Data Acceptance Criteria for Standardized Human-Associated Fecal Source Identification Quantitative Real-Time PCR Methods.

Shanks OC, Kelty CA, Oshiro R, Haugland RA, Madi T, Brooks L, Field KG, Sivaganesan M.

Appl Environ Microbiol. 2016 Apr 18;82(9):2773-2782. doi: 10.1128/AEM.03661-15. Print 2016 May.

12.

Multi-laboratory survey of qPCR enterococci analysis method performance in U.S. coastal and inland surface waters.

Haugland RA, Siefring S, Varma M, Oshima KH, Sivaganesan M, Cao Y, Raith M, Griffith J, Weisberg SB, Noble RT, Blackwood AD, Kinzelman J, Anan'eva T, Bushon RN, Stelzer EA, Harwood VJ, Gordon KV, Sinigalliano C.

J Microbiol Methods. 2016 Apr;123:114-25. doi: 10.1016/j.mimet.2016.01.017. Epub 2016 Feb 2.

PMID:
26844886
13.

Applicability of UV resistant Bacillus pumilus endospores as a human adenovirus surrogate for evaluating the effectiveness of virus inactivation in low-pressure UV treatment systems.

Boczek LA, Rhodes ER, Cashdollar JL, Ryu J, Popovici J, Hoelle JM, Sivaganesan M, Hayes SL, Rodgers MR, Ryu H.

J Microbiol Methods. 2016 Mar;122:43-9. doi: 10.1016/j.mimet.2016.01.012. Epub 2016 Jan 26.

PMID:
26825005
14.

Factors affecting the presence of human-associated and fecal indicator real-time quantitative PCR genetic markers in urban-impacted recreational beaches.

Molina M, Hunter S, Cyterski M, Peed LA, Kelty CA, Sivaganesan M, Mooney T, Prieto L, Shanks OC.

Water Res. 2014 Nov 1;64:196-208. doi: 10.1016/j.watres.2014.06.036. Epub 2014 Jul 9.

PMID:
25061692
15.

Biotic interactions and sunlight affect persistence of fecal indicator bacteria and microbial source tracking genetic markers in the upper Mississippi river.

Korajkic A, McMinn BR, Shanks OC, Sivaganesan M, Fout GS, Ashbolt NJ.

Appl Environ Microbiol. 2014 Jul;80(13):3952-61. doi: 10.1128/AEM.00388-14. Epub 2014 Apr 18.

16.

Comparison of Enterococcus quantitative polymerase chain reaction analysis results from Midwest U.S. river samples using EPA Method 1611 and Method 1609 PCR reagents.

Sivaganesan M, Siefring S, Varma M, Haugland RA.

J Microbiol Methods. 2014 Jun;101:9-17. doi: 10.1016/j.mimet.2014.03.004. Epub 2014 Mar 26. Erratum in: J Microbiol Methods. 2015 Aug;115:166. Sivaganensan, Mano [corrected to Sivaganesan, Mano].

PMID:
24681207
17.

Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples.

Green HC, Haugland RA, Varma M, Millen HT, Borchardt MA, Field KG, Walters WA, Knight R, Sivaganesan M, Kelty CA, Shanks OC.

Appl Environ Microbiol. 2014 May;80(10):3086-94. doi: 10.1128/AEM.04137-13. Epub 2014 Mar 7.

18.

Human fecal source identification with real-time quantitative PCR.

Shanks OC, Peed L, Sivaganesan M, Haugland RA, Chern EC.

Methods Mol Biol. 2014;1096:85-99. doi: 10.1007/978-1-62703-712-9_7.

PMID:
24515362
19.

Age-related shifts in the density and distribution of genetic marker water quality indicators in cow and calf feces.

Shanks OC, Kelty CA, Peed L, Sivaganesan M, Mooney T, Jenkins M.

Appl Environ Microbiol. 2014 Mar;80(5):1588-94. doi: 10.1128/AEM.03581-13. Epub 2013 Dec 20.

20.

Comparison of PCR and quantitative real-time PCR methods for the characterization of ruminant and cattle fecal pollution sources.

Raith MR, Kelty CA, Griffith JF, Schriewer A, Wuertz S, Mieszkin S, Gourmelon M, Reischer GH, Farnleitner AH, Ervin JS, Holden PA, Ebentier DL, Jay JA, Wang D, Boehm AB, Aw TG, Rose JB, Balleste E, Meijer WG, Sivaganesan M, Shanks OC.

Water Res. 2013 Nov 15;47(18):6921-8. doi: 10.1016/j.watres.2013.03.061. Epub 2013 Jul 5.

PMID:
23871256
21.

Characterization of fecal concentrations in human and other animal sources by physical, culture-based, and quantitative real-time PCR methods.

Ervin JS, Russell TL, Layton BA, Yamahara KM, Wang D, Sassoubre LM, Cao Y, Kelty CA, Sivaganesan M, Boehm AB, Holden PA, Weisberg SB, Shanks OC.

Water Res. 2013 Nov 15;47(18):6873-82. doi: 10.1016/j.watres.2013.02.060. Epub 2013 Jul 5.

PMID:
23871252
22.

Effect of platform, reference material, and quantification model on enumeration of Enterococcus by quantitative PCR methods.

Cao Y, Sivaganesan M, Kinzelman J, Blackwood AD, Noble RT, Haugland RA, Griffith JF, Weisberg SB.

Water Res. 2013 Jan 1;47(1):233-41. doi: 10.1016/j.watres.2012.09.056. Epub 2012 Oct 22.

PMID:
23123048
23.

Distribution of genetic marker concentrations for fecal indicator bacteria in sewage and animal feces.

Kelty CA, Varma M, Sivaganesan M, Haugland RA, Shanks OC.

Appl Environ Microbiol. 2012 Jun;78(12):4225-32. doi: 10.1128/AEM.07819-11. Epub 2012 Apr 13.

24.

Interlaboratory comparison of real-time PCR protocols for quantification of general fecal indicator bacteria.

Shanks OC, Sivaganesan M, Peed L, Kelty CA, Blackwood AD, Greene MR, Noble RT, Bushon RN, Stelzer EA, Kinzelman J, Anan'eva T, Sinigalliano C, Wanless D, Griffith J, Cao Y, Weisberg S, Harwood VJ, Staley C, Oshima KH, Varma M, Haugland RA.

Environ Sci Technol. 2012 Jan 17;46(2):945-53. doi: 10.1021/es2031455. Epub 2011 Dec 16. Erratum in: Environ Sci Technol. 2012 Feb 21;46(4):2478.

PMID:
22133009
25.

MPN estimation of qPCR target sequence recoveries from whole cell calibrator samples.

Sivaganesan M, Siefring S, Varma M, Haugland RA.

J Microbiol Methods. 2011 Dec;87(3):343-9. doi: 10.1016/j.mimet.2011.09.013. Epub 2011 Oct 1.

PMID:
21989298
26.

Differential decay of human faecal Bacteroides in marine and freshwater.

Green HC, Shanks OC, Sivaganesan M, Haugland RA, Field KG.

Environ Microbiol. 2011 Dec;13(12):3235-49. doi: 10.1111/j.1462-2920.2011.02549.x. Epub 2011 Sep 1.

PMID:
21883797
27.

Combining land use information and small stream sampling with PCR-based methods for better characterization of diffuse sources of human fecal pollution.

Peed LA, Nietch CT, Kelty CA, Meckes M, Mooney T, Sivaganesan M, Shanks OC.

Environ Sci Technol. 2011 Jul 1;45(13):5652-9. doi: 10.1021/es2003167. Epub 2011 Jun 10.

PMID:
21662992
28.

Performance of PCR-based assays targeting Bacteroidales genetic markers of human fecal pollution in sewage and fecal samples.

Shanks OC, White K, Kelty CA, Sivaganesan M, Blannon J, Meckes M, Varma M, Haugland RA.

Environ Sci Technol. 2010 Aug 15;44(16):6281-8. doi: 10.1021/es100311n.

PMID:
20704227
29.

Improved strategies and optimization of calibration models for real-time PCR absolute quantification.

Sivaganesan M, Haugland RA, Chern EC, Shanks OC.

Water Res. 2010 Sep;44(16):4726-35. doi: 10.1016/j.watres.2010.07.066. Epub 2010 Jul 29.

PMID:
20701947
30.

Evaluation of genetic markers from the 16S rRNA gene V2 region for use in quantitative detection of selected Bacteroidales species and human fecal waste by qPCR.

Haugland RA, Varma M, Sivaganesan M, Kelty C, Peed L, Shanks OC.

Syst Appl Microbiol. 2010 Oct;33(6):348-57. doi: 10.1016/j.syapm.2010.06.001. Epub 2010 Jul 24.

PMID:
20655680
31.

The use of bacteriophages of the family Cystoviridae as surrogates for H5N1 highly pathogenic avian influenza viruses in persistence and inactivation studies.

Adcock NJ, Rice EW, Sivaganesan M, Brown JD, Stallknecht DE, Swayne DE.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2009 Nov;44(13):1362-6. doi: 10.1080/10934520903217054.

PMID:
20183493
32.

Performance assessment PCR-based assays targeting bacteroidales genetic markers of bovine fecal pollution.

Shanks OC, White K, Kelty CA, Hayes S, Sivaganesan M, Jenkins M, Varma M, Haugland RA.

Appl Environ Microbiol. 2010 Mar;76(5):1359-66. doi: 10.1128/AEM.02033-09. Epub 2010 Jan 8.

33.

Quantitative PCR for genetic markers of human fecal pollution.

Shanks OC, Kelty CA, Sivaganesan M, Varma M, Haugland RA.

Appl Environ Microbiol. 2009 Sep;75(17):5507-13. doi: 10.1128/AEM.00305-09. Epub 2009 Jul 10.

34.

Correlations of water quality parameters with mutagenicity of chlorinated drinking water samples.

Schenck KM, Sivaganesan M, Rice GE.

J Toxicol Environ Health A. 2009;72(7):461-7. doi: 10.1080/15287390802608940.

PMID:
19267307
35.

Assessing the effectiveness of low-pressure ultraviolet light for inactivating Mycobacterium avium complex (MAC) micro-organisms.

Hayes SL, Sivaganesan M, White KM, Pfaller SL.

Lett Appl Microbiol. 2008 Nov;47(5):386-92. doi: 10.1111/j.1472-765X.2008.02442.x.

36.

A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards.

Sivaganesan M, Seifring S, Varma M, Haugland RA, Shanks OC.

BMC Bioinformatics. 2008 Feb 25;9:120. doi: 10.1186/1471-2105-9-120.

37.

Chlorine inactivation of highly pathogenic avian influenza virus (H5N1).

Rice EW, Adcock NJ, Sivaganesan M, Brown JD, Stallknecht DE, Swayne DE.

Emerg Infect Dis. 2007 Oct;13(10):1568-70. doi: 10.3201/eid1310.070323.

38.

Quantitative PCR for detection and enumeration of genetic markers of bovine fecal pollution.

Shanks OC, Atikovic E, Blackwood AD, Lu J, Noble RT, Domingo JS, Seifring S, Sivaganesan M, Haugland RA.

Appl Environ Microbiol. 2008 Feb;74(3):745-52. Epub 2007 Dec 7.

39.
40.

Effect of lot variability on ultraviolet radiation inactivation kinetics of Cryptosporidium parvum oocysts.

Sivaganesan M, Sivaganesan S.

Environ Sci Technol. 2005 Jun 1;39(11):4166-71.

PMID:
15984796
42.
43.

Estimation of Giardia Ct values at high pH for the Surface Water Treatment Rule.

Sivaganesan M, Rice EW.

J Environ Sci Health A Tox Hazard Subst Environ Eng. 2003 Sep;38(9):1959-70.

PMID:
12940495
44.

Development of a Ct equation for the inactivation of Cryptosporidium oocysts with chlorine dioxide.

Clark RM, Sivaganesan M, Rice EW, Chen J.

Water Res. 2003 Jun;37(11):2773-83.

PMID:
12753856

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