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Items: 1 to 50 of 157

1.

The role of defects in the physical properties of mechanically activated PbTiO3 ferroelectrics.

Abdulvakhidov KG, Sirota MA, Budnyk AP, Lastovina TA, Abdulvakhidov BK, Sadykov SA, Plyaka PS, Soldatov AV.

J Phys Condens Matter. 2019 Apr 3;31(13):135402. doi: 10.1088/1361-648X/aafebe. Epub 2019 Jan 15.

PMID:
30645983
2.

Author Correction: Enabling precision medicine in neonatology, an integrated repository for preterm birth research.

Sirota M, Thomas CG, Liu R, Zuhl M, Banerjee P, Wong RJ, Quaintance CC, Leite R, Chubiz J, Anderson R, Chappell J, Kim M, Grobman W, Zhang G, Rokas A, Muglia LJ, Ober C, England SK, Macones G, Driscoll D, Parry S, Shaw GM, Stevenson DK, Simpson JL, Thomson E, Butte AJ; March of Dimes Prematurity Research Centers.

Sci Data. 2018 Dec 18;5(1):3. doi: 10.1038/s41597-018-0004-3.

3.

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.

Ghaemi MS, DiGiulio DB, Contrepois K, Callahan B, Ngo TTM, Lee-McMullen B, Lehallier B, Robaczewska A, Mcilwain D, Rosenberg-Hasson Y, Wong RJ, Quaintance C, Culos A, Stanley N, Tanada A, Tsai A, Gaudilliere D, Ganio E, Han X, Ando K, McNeil L, Tingle M, Wise P, Maric I, Sirota M, Wyss-Coray T, Winn VD, Druzin ML, Gibbs R, Darmstadt GL, Lewis DB, Partovi Nia V, Agard B, Tibshirani R, Nolan G, Snyder MP, Relman DA, Quake SR, Shaw GM, Stevenson DK, Angst MS, Gaudilliere B, Aghaeepour N.

Bioinformatics. 2019 Jan 1;35(1):95-103. doi: 10.1093/bioinformatics/bty537.

4.

A systematic review and meta-analysis of the effects of transcranial direct current stimulation (tDCS) on episodic memory.

Galli G, Vadillo MA, Sirota M, Feurra M, Medvedeva A.

Brain Stimul. 2019 Mar - Apr;12(2):231-241. doi: 10.1016/j.brs.2018.11.008. Epub 2018 Nov 17. Review.

PMID:
30503376
5.

Pre-pregnancy or first-trimester risk scoring to identify women at high risk of preterm birth.

Baer RJ, McLemore MR, Adler N, Oltman SP, Chambers BD, Kuppermann M, Pantell MS, Rogers EE, Ryckman KK, Sirota M, Rand L, Jelliffe-Pawlowski LL.

Eur J Obstet Gynecol Reprod Biol. 2018 Dec;231:235-240. doi: 10.1016/j.ejogrb.2018.11.004. Epub 2018 Nov 5.

PMID:
30439652
6.

Enabling precision medicine in neonatology, an integrated repository for preterm birth research.

Sirota M, Thomas CG, Liu R, Zuhl M, Banerjee P, Wong RJ, Quaintance CC, Leite R, Chubiz J, Anderson R, Chappell J, Kim M, Grobman W, Zhang G, Rokas A, England SK, Parry S, Shaw GM, Simpson JL, Thomson E, Butte AJ; March of Dimes Prematurity Research Centers.

Sci Data. 2018 Nov 6;5:180219. doi: 10.1038/sdata.2018.219. Erratum in: Sci Data. 2018 Dec 18;5(1):3.

7.

"1-in-X" bias: "1-in-X" format causes overestimation of health-related risks.

Sirota M, Juanchich M, Bonnefon JF.

J Exp Psychol Appl. 2018 Dec;24(4):431-439. doi: 10.1037/xap0000190. Epub 2018 Sep 24.

PMID:
30247046
8.

Environmental pollution and social factors as contributors to preterm birth in Fresno County.

Padula AM, Huang H, Baer RJ, August LM, Jankowska MM, Jellife-Pawlowski LL, Sirota M, Woodruff TJ.

Environ Health. 2018 Aug 29;17(1):70. doi: 10.1186/s12940-018-0414-x.

9.

Investigation of association between environmental and socioeconomic factors and preterm birth in California.

Huang H, Woodruff TJ, Baer RJ, Bangia K, August LM, Jellife-Palowski LL, Padula AM, Sirota M.

Environ Int. 2018 Dec;121(Pt 2):1066-1078. doi: 10.1016/j.envint.2018.07.027. Epub 2018 Jul 31.

10.

Determining Significance in the New Era for P Values.

Pineda S, Sirota M.

J Pediatr Gastroenterol Nutr. 2018 Nov;67(5):547-548. doi: 10.1097/MPG.0000000000002120. No abstract available.

PMID:
30052572
11.

A Suspect Screening Method for Characterizing Multiple Chemical Exposures among a Demographically Diverse Population of Pregnant Women in San Francisco.

Wang A, Gerona RR, Schwartz JM, Lin T, Sirota M, Morello-Frosch R, Woodruff TJ.

Environ Health Perspect. 2018 Jul 24;126(7):077009. doi: 10.1289/EHP2920. eCollection 2018 Jul.

12.

Meta-Analysis of Maternal and Fetal Transcriptomic Data Elucidates the Role of Adaptive and Innate Immunity in Preterm Birth.

Vora B, Wang A, Kosti I, Huang H, Paranjpe I, Woodruff TJ, MacKenzie T, Sirota M.

Front Immunol. 2018 May 9;9:993. doi: 10.3389/fimmu.2018.00993. eCollection 2018.

13.

Learning facts during aging: the benefits of curiosity.

Galli G, Sirota M, Gruber MJ, Ivanof BE, Ganesh J, Materassi M, Thorpe A, Loaiza V, Cappelletti M, Craik FIM.

Exp Aging Res. 2018 Jul-Sep;44(4):311-328. doi: 10.1080/0361073X.2018.1477355. Epub 2018 May 22.

PMID:
29787342
14.

Electronic Medical Records Enable Precision Medicine Approaches for Celiac Disease.

Kosti I, Sirota M.

J Pediatr Gastroenterol Nutr. 2018 Oct;67(4):434-435. doi: 10.1097/MPG.0000000000002021. No abstract available.

PMID:
29746345
15.

Effect of response format on cognitive reflection: Validating a two- and four-option multiple choice question version of the Cognitive Reflection Test.

Sirota M, Juanchich M.

Behav Res Methods. 2018 Dec;50(6):2511-2522. doi: 10.3758/s13428-018-1029-4.

PMID:
29589333
16.

Decision-makers are resilient in the face of social exclusion.

Juanchich M, Walasek L, Sirota M.

Br J Psychol. 2018 Aug;109(3):604-630. doi: 10.1111/bjop.12294. Epub 2018 Mar 6.

PMID:
29512152
17.

Cumulative Risk and Impact Modeling on Environmental Chemical and Social Stressors.

Huang H, Wang A, Morello-Frosch R, Lam J, Sirota M, Padula A, Woodruff TJ.

Curr Environ Health Rep. 2018 Mar;5(1):88-99. doi: 10.1007/s40572-018-0180-5. Review.

PMID:
29441463
18.

Corrigendum: Novel Non-Histocompatibility Antigen Mismatched Variants Improve the Ability to Predict Antibody-Mediated Rejection Risk in Kidney Transplant.

Pineda S, Sigdel TK, Chen J, Jackson AM, Sirota M, Sarwal MM.

Front Immunol. 2018 Jan 31;9:107. doi: 10.3389/fimmu.2018.00107. eCollection 2018.

19.

Are minor alleles more likely to be risk alleles?

Kido T, Sikora-Wohlfeld W, Kawashima M, Kikuchi S, Kamatani N, Patwardhan A, Chen R, Sirota M, Kodama K, Hadley D, Butte AJ.

BMC Med Genomics. 2018 Jan 19;11(1):3. doi: 10.1186/s12920-018-0322-5.

20.

A genome-wide association study identifies only two ancestry specific variants associated with spontaneous preterm birth.

Rappoport N, Toung J, Hadley D, Wong RJ, Fujioka K, Reuter J, Abbott CW, Oh S, Hu D, Eng C, Huntsman S, Bodian DL, Niederhuber JE, Hong X, Zhang G, Sikora-Wohfeld W, Gignoux CR, Wang H, Oehlert J, Jelliffe-Pawlowski LL, Gould JB, Darmstadt GL, Wang X, Bustamante CD, Snyder MP, Ziv E, Patsopoulos NA, Muglia LJ, Burchard E, Shaw GM, O'Brodovich HM, Stevenson DK, Butte AJ, Sirota M.

Sci Rep. 2018 Jan 9;8(1):226. doi: 10.1038/s41598-017-18246-5.

21.

Correction to: Hydroxychloroquine dosing in immune-mediated diseases: implications for patient safety.

Gianfrancesco MA, Schmajuk G, Haserodt S, Trupin L, Izadi Z, Jafri K, Shiboski S, Sirota M, Dudley RA, Yazdany J.

Rheumatol Int. 2018 Feb;38(2):319. doi: 10.1007/s00296-017-3918-8.

PMID:
29273937
22.

Novel Non-Histocompatibility Antigen Mismatched Variants Improve the Ability to Predict Antibody-Mediated Rejection Risk in Kidney Transplant.

Pineda S, Sigdel TK, Chen J, Jackson AM, Sirota M, Sarwal MM.

Front Immunol. 2017 Dec 5;8:1687. doi: 10.3389/fimmu.2017.01687. eCollection 2017. Erratum in: Front Immunol. 2018 Jan 31;9:107.

23.

Divergent Patterns of Mitochondrial and Nuclear Ancestry Are Associated with the Risk for Preterm Birth.

Crawford N, Prendergast D, Oehlert JW, Shaw GM, Stevenson DK, Rappaport N, Sirota M, Tishkoff SA, Sondheimer N.

J Pediatr. 2018 Mar;194:40-46.e4. doi: 10.1016/j.jpeds.2017.10.052. Epub 2017 Dec 14.

24.

Productive common light chain libraries yield diverse panels of high affinity bispecific antibodies.

Van Blarcom T, Lindquist K, Melton Z, Cheung WL, Wagstrom C, McDonough D, Valle Oseguera C, Ding S, Rossi A, Potluri S, Sundar P, Pitts S, Sirota M, Galindo Casas M, Yan Y, Jones J, Roe-Zurz Z, Srivatsa Srinivasan S, Zhai W, Pons J, Rajpal A, Chaparro-Riggers J.

MAbs. 2018 Feb/Mar;10(2):256-268. doi: 10.1080/19420862.2017.1406570. Epub 2017 Dec 14.

25.

Expected but omitted stimuli affect crossmodal interaction.

Costantini M, Migliorati D, Donno B, Sirota M, Ferri F.

Cognition. 2018 Feb;171:52-64. doi: 10.1016/j.cognition.2017.10.016. Epub 2017 Nov 4.

PMID:
29107888
26.

Combined inhibition of atypical PKC and histone deacetylase 1 is cooperative in basal cell carcinoma treatment.

Mirza AN, Fry MA, Urman NM, Atwood SX, Roffey J, Ott GR, Chen B, Lee A, Brown AS, Aasi SZ, Hollmig T, Ator MA, Dorsey BD, Ruggeri BR, Zificsak CA, Sirota M, Tang JY, Butte A, Epstein E, Sarin KY, Oro AE.

JCI Insight. 2017 Nov 2;2(21). pii: 97071. doi: 10.1172/jci.insight.97071. [Epub ahead of print]

27.

Congenital Diaphragmatic Hernia.

Klein J, Sirota M.

N Engl J Med. 2017 Oct 26;377(17):e25. doi: 10.1056/NEJMicm1701321. No abstract available.

28.

Health Professionals Prefer to Communicate Risk-Related Numerical Information Using "1-in-X" Ratios.

Sirota M, Juanchich M, Petrova D, Garcia-Retamero R, Walasek L, Bhatia S.

Med Decis Making. 2018 Apr;38(3):366-376. doi: 10.1177/0272989X17734203. Epub 2017 Oct 25.

PMID:
29068246
29.

Comprehensive analysis of normal adjacent to tumor transcriptomes.

Aran D, Camarda R, Odegaard J, Paik H, Oskotsky B, Krings G, Goga A, Sirota M, Butte AJ.

Nat Commun. 2017 Oct 20;8(1):1077. doi: 10.1038/s41467-017-01027-z.

30.

Brain indices of disagreement with one's social values predict EU referendum voting behavior.

Galli G, Sirota M, Materassi M, Zaninotto F, Terry P.

Soc Cogn Affect Neurosci. 2017 Nov 1;12(11):1758-1765. doi: 10.1093/scan/nsx105.

31.

Motors of influenza vaccination uptake and vaccination advocacy in healthcare workers: Development and validation of two short scales.

Vallée-Tourangeau G, Promberger M, Moon K, Wheelock A, Sirota M, Norton C, Sevdalis N.

Vaccine. 2018 Oct 22;36(44):6540-6545. doi: 10.1016/j.vaccine.2017.08.025. Epub 2017 Sep 25.

32.

Precision annotation of digital samples in NCBI's gene expression omnibus.

Hadley D, Pan J, El-Sayed O, Aljabban J, Aljabban I, Azad TD, Hadied MO, Raza S, Rayikanti BA, Chen B, Paik H, Aran D, Spatz J, Himmelstein D, Panahiazar M, Bhattacharya S, Sirota M, Musen MA, Butte AJ.

Sci Data. 2017 Sep 19;4:170125. doi: 10.1038/sdata.2017.125.

33.

How much will the sea level rise? Outcome selection and subjective probability in climate change predictions.

Juanchich M, Sirota M.

J Exp Psychol Appl. 2017 Dec;23(4):386-402. doi: 10.1037/xap0000137. Epub 2017 Aug 17.

PMID:
28816471
34.

Hydroxychloroquine dosing in immune-mediated diseases: implications for patient safety.

Gianfrancesco MA, Schmajuk G, Haserodt S, Trupin L, Izadi Z, Jafri K, Shiboski S, Sirota M, Dudley RA, Yazdany J.

Rheumatol Int. 2017 Oct;37(10):1611-1618. doi: 10.1007/s00296-017-3782-6. Epub 2017 Jul 26. Erratum in: Rheumatol Int. 2017 Dec 22;:.

35.

A Haystack Heuristic for Autoimmune Disease Biomarker Discovery Using Next-Gen Immune Repertoire Sequencing Data.

Apeltsin L, Wang S, von Büdingen HC, Sirota M.

Sci Rep. 2017 Jul 13;7(1):5338. doi: 10.1038/s41598-017-04439-5.

36.

Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets.

Chen B, Ma L, Paik H, Sirota M, Wei W, Chua MS, So S, Butte AJ.

Nat Commun. 2017 Jul 12;8:16022. doi: 10.1038/ncomms16022.

37.

Using health-system-wide data to understand hepatitis B virus prophylaxis and reactivation outcomes in patients receiving rituximab.

Schmajuk G, Tonner C, Trupin L, Li J, Sarkar U, Ludwig D, Shiboski S, Sirota M, Dudley RA, Murray S, Yazdany J.

Medicine (Baltimore). 2017 Mar;96(13):e6528. doi: 10.1097/MD.0000000000006528.

38.

Prevalence and alternative explanations influence cancer diagnosis: An experimental study with physicians.

Sirota M, Kostopoulou O, Round T, Samaranayaka S.

Health Psychol. 2017 May;36(5):477-485. doi: 10.1037/hea0000461. Epub 2017 Feb 27.

39.

Dynamic changes in prefrontal cortex involvement during verbal episodic memory formation.

Galli G, Feurra M, Pavone EF, Sirota M, Rossi S.

Biol Psychol. 2017 Apr;125:36-44. doi: 10.1016/j.biopsycho.2017.02.008. Epub 2017 Feb 24.

PMID:
28238886
40.

Expectations for antibiotics increase their prescribing: Causal evidence about localized impact.

Sirota M, Round T, Samaranayaka S, Kostopoulou O.

Health Psychol. 2017 Apr;36(4):402-409. doi: 10.1037/hea0000456. Epub 2017 Feb 16.

41.

Interactivity mitigates the impact of working memory depletion on mental arithmetic performance.

Vallée-Tourangeau F, Sirota M, Vallée-Tourangeau G.

Cogn Res Princ Implic. 2016;1(1):26. doi: 10.1186/s41235-016-0027-2. Epub 2016 Dec 7.

42.

Transplantomics: Toward Precision Medicine in Transplantation Research.

Sirota M, Sarwal MM.

Transplantation. 2017 Aug;101(8):1777-1782. doi: 10.1097/TP.0000000000001664. Review.

PMID:
28121910
43.

Synergistic drug combinations from electronic health records and gene expression.

Low YS, Daugherty AC, Schroeder EA, Chen W, Seto T, Weber S, Lim M, Hastie T, Mathur M, Desai M, Farrington C, Radin AA, Sirota M, Kenkare P, Thompson CA, Yu PP, Gomez SL, Sledge GW Jr, Kurian AW, Shah NH.

J Am Med Inform Assoc. 2017 May 1;24(3):565-576. doi: 10.1093/jamia/ocw161.

44.

Integrating Clinical Phenotype and Gene Expression Data to Prioritize Novel Drug Uses.

Paik H, Chen B, Sirota M, Hadley D, Butte AJ.

CPT Pharmacometrics Syst Pharmacol. 2016 Nov;5(11):599-607. doi: 10.1002/psp4.12108. Epub 2016 Nov 14.

45.

Germline-encoded neutralization of a Staphylococcus aureus virulence factor by the human antibody repertoire.

Yeung YA, Foletti D, Deng X, Abdiche Y, Strop P, Glanville J, Pitts S, Lindquist K, Sundar PD, Sirota M, Hasa-Moreno A, Pham A, Melton Witt J, Ni I, Pons J, Shelton D, Rajpal A, Chaparro-Riggers J.

Nat Commun. 2016 Nov 18;7:13376. doi: 10.1038/ncomms13376.

46.

Insight with hands and things.

Vallée-Tourangeau F, Steffensen SV, Vallée-Tourangeau G, Sirota M.

Acta Psychol (Amst). 2016 Oct;170:195-205. doi: 10.1016/j.actpsy.2016.08.006. Epub 2016 Aug 26.

PMID:
27569687
47.

Environmental influences on reproductive health: the importance of chemical exposures.

Wang A, Padula A, Sirota M, Woodruff TJ.

Fertil Steril. 2016 Sep 15;106(4):905-29. doi: 10.1016/j.fertnstert.2016.07.1076. Epub 2016 Aug 9. Review.

48.

Cross-tissue Analysis of Gene and Protein Expression in Normal and Cancer Tissues.

Kosti I, Jain N, Aran D, Butte AJ, Sirota M.

Sci Rep. 2016 May 4;6:24799. doi: 10.1038/srep24799.

49.

Constraints on Biological Mechanism from Disease Comorbidity Using Electronic Medical Records and Database of Genetic Variants.

Bagley SC, Sirota M, Chen R, Butte AJ, Altman RB.

PLoS Comput Biol. 2016 Apr 26;12(4):e1004885. doi: 10.1371/journal.pcbi.1004885. eCollection 2016 Apr.

50.

The Role of Physicians' First Impressions in the Diagnosis of Possible Cancers without Alarm Symptoms.

Kostopoulou O, Sirota M, Round T, Samaranayaka S, Delaney BC.

Med Decis Making. 2017 Jan;37(1):9-16. Epub 2016 Apr 25.

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