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Items: 1 to 50 of 59

1.

LYN, a key mediator in estrogen-dependent suppression of osteoclast differentiation, survival, and function.

Gavali S, Gupta MK, Daswani B, Wani MR, Sirdeshmukh R, Khatkhatay MI.

Biochim Biophys Acta Mol Basis Dis. 2019 Mar 1;1865(3):547-557. doi: 10.1016/j.bbadis.2018.12.016. Epub 2018 Dec 20.

PMID:
30579930
2.

Identification of a Novel Splice Variant of Neural Cell Adhesion Molecule in Glioblastoma Through Proteogenomics Analysis.

Jayaram S, Balakrishnan L, Singh M, Zabihi A, Ganesh RA, Mangalaparthi KK, Sonpatki P, Gupta MK, Amaresha CB, Prasad K, Mariswamappa K, Pillai S, Lakshmikantha A, Shah N, Sirdeshmukh R.

OMICS. 2018 Jun;22(6):437-448. doi: 10.1089/omi.2017.0220.

PMID:
29927716
3.

Multi-Omics Data Integration and Mapping of Altered Kinases to Pathways Reveal Gonadotropin Hormone Signaling in Glioblastoma.

Jayaram S, Gupta MK, Raju R, Gautam P, Sirdeshmukh R.

OMICS. 2016 Dec;20(12):736-746.

PMID:
27930095
4.

Sample preparation method considerations for integrated transcriptomic and proteomic analysis of tumors.

Bhat AR, Gupta MK, Krithivasan P, Dhas K, Nair J, Reddy RB, Sudheendra HV, Chavan S, Vardhan H, Darsi S, Balakrishnan L, Katragadda S, Kekatpure V, Suresh A, Tata P, Panda B, Kuriakose MA, Sirdeshmukh R.

Proteomics Clin Appl. 2017 Mar;11(3-4). doi: 10.1002/prca.201600100. Epub 2016 Nov 28.

PMID:
27801551
5.

Microsomal membrane proteome of low grade diffuse astrocytomas: Differentially expressed proteins and candidate surveillance biomarkers.

Polisetty RV, Gautam P, Gupta MK, Sharma R, Gowda H, Renu D, Shivakumar BM, Lakshmikantha A, Mariswamappa K, Ankathi P, Purohit AK, Uppin MS, Sundaram C, Sirdeshmukh R.

Sci Rep. 2016 Jun 1;6:26882. doi: 10.1038/srep26882.

6.

In-depth 2-DE reference map of Aspergillus fumigatus and its proteomic profiling on exposure to itraconazole.

Gautam P, Mushahary D, Hassan W, Upadhyay SK, Madan T, Sirdeshmukh R, Sundaram CS, Sarma PU.

Med Mycol. 2016 Jul 1;54(5):524-36. doi: 10.1093/mmy/myv122. Epub 2016 Feb 11.

PMID:
26868900
7.

Downregulation of S100 Calcium Binding Protein A9 in Esophageal Squamous Cell Carcinoma.

Pawar H, Srikanth SM, Kashyap MK, Sathe G, Chavan S, Singal M, Manju HC, Kumar KV, Vijayakumar M, Sirdeshmukh R, Pandey A, Prasad TS, Gowda H, Kumar RV.

ScientificWorldJournal. 2015;2015:325721. doi: 10.1155/2015/325721. Epub 2015 Dec 14.

8.

Transcriptomic and Proteomic Data Integration and Two-Dimensional Molecular Maps with Regulatory and Functional Linkages: Application to Cell Proliferation and Invasion Networks in Glioblastoma.

Gupta MK, Jayaram S, Reddy DN, Polisetty RV, Sirdeshmukh R.

J Proteome Res. 2015 Dec 4;14(12):5017-27. doi: 10.1021/acs.jproteome.5b00765. Epub 2015 Oct 23.

PMID:
26464075
9.

Data from human salivary proteome - A resource of potential biomarkers for oral cancer.

Sivadasan P, Kumar Gupta M, Sathe GJ, Balakrishnan L, Palit P, Gowda H, Suresh A, Abraham Kuriakose M, Sirdeshmukh R.

Data Brief. 2015 Jul 2;4:374-8. doi: 10.1016/j.dib.2015.06.014. eCollection 2015 Sep.

10.

Insights from Chromosome-Centric Mapping of Disease-Associated Genes: Chromosome 12 Perspective.

Jayaram S, Gupta MK, Shivakumar BM, Ghatge M, Sharma A, Vangala RK, Sirdeshmukh R.

J Proteome Res. 2015 Sep 4;14(9):3432-40. doi: 10.1021/acs.jproteome.5b00488. Epub 2015 Jul 15.

PMID:
26143930
11.

Human salivary proteome--a resource of potential biomarkers for oral cancer.

Sivadasan P, Gupta MK, Sathe GJ, Balakrishnan L, Palit P, Gowda H, Suresh A, Kuriakose MA, Sirdeshmukh R.

J Proteomics. 2015 Sep 8;127(Pt A):89-95. doi: 10.1016/j.jprot.2015.05.039. Epub 2015 Jun 12.

PMID:
26073025
12.

Monocyte Proteomics Reveals Involvement of Phosphorylated HSP27 in the Pathogenesis of Osteoporosis.

Daswani B, Gupta MK, Gavali S, Desai M, Sathe GJ, Patil A, Parte P, Sirdeshmukh R, Khatkhatay MI.

Dis Markers. 2015;2015:196589. doi: 10.1155/2015/196589. Epub 2015 May 7.

13.

Indian proteomics efforts and human proteome project.

Sirdeshmukh R.

J Proteomics. 2015 Sep 8;127(Pt A):147-51. doi: 10.1016/j.jprot.2015.03.018. Epub 2015 Mar 26. Review.

PMID:
25818723
14.

Towards developing biomarkers for glioblastoma multiforme: a proteomics view.

Jayaram S, Gupta MK, Polisetty RV, Cho WC, Sirdeshmukh R.

Expert Rev Proteomics. 2014 Oct;11(5):621-39. doi: 10.1586/14789450.2014.939634. Epub 2014 Aug 13. Review.

PMID:
25115191
15.

Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis.

Kelkar DS, Provost E, Chaerkady R, Muthusamy B, Manda SS, Subbannayya T, Selvan LD, Wang CH, Datta KK, Woo S, Dwivedi SB, Renuse S, Getnet D, Huang TC, Kim MS, Pinto SM, Mitchell CJ, Madugundu AK, Kumar P, Sharma J, Advani J, Dey G, Balakrishnan L, Syed N, Nanjappa V, Subbannayya Y, Goel R, Prasad TS, Bafna V, Sirdeshmukh R, Gowda H, Wang C, Leach SD, Pandey A.

Mol Cell Proteomics. 2014 Nov;13(11):3184-98. doi: 10.1074/mcp.M114.038299. Epub 2014 Jul 24.

16.

Identification and characterization of proteins encoded by chromosome 12 as part of chromosome-centric human proteome project.

Manda SS, Nirujogi RS, Pinto SM, Kim MS, Datta KK, Sirdeshmukh R, Prasad TS, Thongboonkerd V, Pandey A, Gowda H.

J Proteome Res. 2014 Jul 3;13(7):3166-77. doi: 10.1021/pr401123v. Epub 2014 Jun 24.

PMID:
24960282
17.

A draft map of the human proteome.

Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A.

Nature. 2014 May 29;509(7502):575-81. doi: 10.1038/nature13302.

18.

Pancreatic Cancer Database: an integrative resource for pancreatic cancer.

Thomas JK, Kim MS, Balakrishnan L, Nanjappa V, Raju R, Marimuthu A, Radhakrishnan A, Muthusamy B, Khan AA, Sakamuri S, Tankala SG, Singal M, Nair B, Sirdeshmukh R, Chatterjee A, Prasad TS, Maitra A, Gowda H, Hruban RH, Pandey A.

Cancer Biol Ther. 2014 Aug;15(8):963-7. doi: 10.4161/cbt.29188. Epub 2014 May 19.

19.

Chromosome-centric Human Proteome Project (C-HPP): Chromosome 12.

Chaiyarit S, Singhto N, Chen YJ, Cheng CY, Chiangjong W, Kanlaya R, Lam HH, Peerapen P, Sung TY, Tipthara P, Pandey A, Poon TC, Chen YJ, Sirdeshmukh R, Chung MC, Thongboonkerd V.

J Proteome Res. 2014 Jul 3;13(7):3160-5. doi: 10.1021/pr500009j. Epub 2014 Jun 24.

PMID:
24831074
20.

Chromosome-centric human proteome project: deciphering proteins associated with glioma and neurodegenerative disorders on chromosome 12.

Gupta MK, Jayaram S, Madugundu AK, Chavan S, Advani J, Pandey A, Thongboonkerd V, Sirdeshmukh R.

J Proteome Res. 2014 Jul 3;13(7):3178-90. doi: 10.1021/pr500023p. Epub 2014 Jun 24.

PMID:
24804578
21.

Human surfactant protein D alters oxidative stress and HMGA1 expression to induce p53 apoptotic pathway in eosinophil leukemic cell line.

Mahajan L, Pandit H, Madan T, Gautam P, Yadav AK, Warke H, Sundaram CS, Sirdeshmukh R, Sarma PU, Kishore U, Surolia A.

PLoS One. 2013 Dec 31;8(12):e85046. doi: 10.1371/journal.pone.0085046. eCollection 2013.

22.

Plasma Proteome Database as a resource for proteomics research: 2014 update.

Nanjappa V, Thomas JK, Marimuthu A, Muthusamy B, Radhakrishnan A, Sharma R, Ahmad Khan A, Balakrishnan L, Sahasrabuddhe NA, Kumar S, Jhaveri BN, Sheth KV, Kumar Khatana R, Shaw PG, Srikanth SM, Mathur PP, Shankar S, Nagaraja D, Christopher R, Mathivanan S, Raju R, Sirdeshmukh R, Chatterjee A, Simpson RJ, Harsha HC, Pandey A, Prasad TS.

Nucleic Acids Res. 2014 Jan;42(Database issue):D959-65. doi: 10.1093/nar/gkt1251. Epub 2013 Dec 3.

23.

Heterogeneous nuclear ribonucleoproteins and their interactors are a major class of deregulated proteins in anaplastic astrocytoma: a grade III malignant glioma.

Polisetty RV, Gautam P, Gupta MK, Sharma R, Uppin MS, Challa S, Ankathi P, Purohit AK, Renu D, Harsha HC, Pandey A, Sirdeshmukh R.

J Proteome Res. 2013 Jul 5;12(7):3128-38. doi: 10.1021/pr400339h. Epub 2013 Jun 6.

PMID:
23741984
24.

An integrated map of corticotropin-releasing hormone signaling pathway.

Subbannayya T, Balakrishnan L, Sudarshan G, Advani J, Kumar S, Mahmood R, Nair B, Sirdeshmukh R, Mukherjee KK, Umathe SN, Raju R, Prasad TS.

J Cell Commun Signal. 2013 Dec;7(4):295-300. doi: 10.1007/s12079-013-0197-3. Epub 2013 Mar 16. No abstract available.

25.

Secretome analysis of Glioblastoma cell line--HNGC-2.

Gupta MK, Polisetty RV, Ramamoorthy K, Tiwary S, Kaur N, Uppin MS, Shiras A, Sirdeshmukh R.

Mol Biosyst. 2013 Jun;9(6):1390-400. doi: 10.1039/c3mb25383j. Epub 2013 Mar 13.

PMID:
23483059
26.

Expanded protein expression profile of human placenta using two-dimensional gel electrophoresis.

Mushahary D, Gautam P, Sundaram CS, Sirdeshmukh R.

Placenta. 2013 Feb;34(2):193-6. doi: 10.1016/j.placenta.2012.11.015. Epub 2012 Dec 20.

PMID:
23261269
27.

Proteins with altered levels in plasma from glioblastoma patients as revealed by iTRAQ-based quantitative proteomic analysis.

Gautam P, Nair SC, Gupta MK, Sharma R, Polisetty RV, Uppin MS, Sundaram C, Puligopu AK, Ankathi P, Purohit AK, Chandak GR, Harsha HC, Sirdeshmukh R.

PLoS One. 2012;7(9):e46153. doi: 10.1371/journal.pone.0046153. Epub 2012 Sep 28.

28.

Downregulation of cornulin in esophageal squamous cell carcinoma.

Pawar H, Maharudraiah J, Kashyap MK, Sharma J, Srikanth SM, Choudhary R, Chavan S, Sathe G, Manju HC, Kumar KV, Vijayakumar M, Sirdeshmukh R, Harsha HC, Prasad TS, Pandey A, Kumar RV.

Acta Histochem. 2013 Mar;115(2):89-99. doi: 10.1016/j.acthis.2012.04.003. Epub 2012 May 5.

PMID:
22560086
29.

LC-MS/MS analysis of differentially expressed glioblastoma membrane proteome reveals altered calcium signaling and other protein groups of regulatory functions.

Polisetty RV, Gautam P, Sharma R, Harsha HC, Nair SC, Gupta MK, Uppin MS, Challa S, Puligopu AK, Ankathi P, Purohit AK, Chandak GR, Pandey A, Sirdeshmukh R.

Mol Cell Proteomics. 2012 Jun;11(6):M111.013565. doi: 10.1074/mcp.M111.013565. Epub 2012 Jan 4.

30.

Transcriptomic and proteomic profile of Aspergillus fumigatus on exposure to artemisinin.

Gautam P, Upadhyay SK, Hassan W, Madan T, Sirdeshmukh R, Sundaram CS, Gade WN, Basir SF, Singh Y, Sarma PU.

Mycopathologia. 2011 Nov;172(5):331-46. doi: 10.1007/s11046-011-9445-3. Epub 2011 Jul 14.

PMID:
21755315
31.

Glioblastoma cell secretome: analysis of three glioblastoma cell lines reveal 148 non-redundant proteins.

Polisetty RV, Gupta MK, Nair SC, Ramamoorthy K, Tiwary S, Shiras A, Chandak GR, Sirdeshmukh R.

J Proteomics. 2011 Sep 6;74(10):1918-25. doi: 10.1016/j.jprot.2011.05.002. Epub 2011 May 11.

PMID:
21601021
32.

Proteomic profiling of cancer of the gingivo-buccal complex: Identification of new differentially expressed markers.

Govekar RB, D'Cruz AK, Alok Pathak K, Agarwal J, Dinshaw KA, Chinoy RF, Gadewal N, Kannan S, Sirdeshmukh R, Sundaram CS, Malgundkar SA, Kane SV, Zingde SM.

Proteomics Clin Appl. 2009 Dec;3(12):1451-62. doi: 10.1002/prca.200900023. Epub 2009 Oct 14.

PMID:
21136964
33.

The Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate-washed membrane standard.

Peng L, Kapp EA, Fenyö D, Kwon MS, Jiang P, Wu S, Jiang Y, Aguilar MI, Ahmed N, Baker MS, Cai Z, Chen YJ, Van Chi P, Chung MC, He F, Len AC, Liao PC, Nakamura K, Ngai SM, Paik YK, Pan TL, Poon TC, Salekdeh GH, Simpson RJ, Sirdeshmukh R, Srisomsap C, Svasti J, Tyan YC, Dreyer FS, McLauchlan D, Rawson P, Jordan TW.

Proteomics. 2010 Nov;10(22):4142-8. doi: 10.1002/pmic.201000126.

34.

Proteomic and transcriptomic analysis of Aspergillus fumigatus on exposure to amphotericin B.

Gautam P, Shankar J, Madan T, Sirdeshmukh R, Sundaram CS, Gade WN, Basir SF, Sarma PU.

Antimicrob Agents Chemother. 2008 Dec;52(12):4220-7. doi: 10.1128/AAC.01431-07. Epub 2008 Oct 6.

35.

Proteomics in India: an overview.

Sirdeshmukh R.

Mol Cell Proteomics. 2008 Jul;7(7):1406-7. No abstract available.

36.

Human Proteinpedia enables sharing of human protein data.

Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR, Cagney G, Cantin GT, Cardasis HL, Celis JE, Chaerkady R, Chu F, Cole PA, Costello CE, Cotter RJ, Crockett D, DeLany JP, De Marzo AM, DeSouza LV, Deutsch EW, Dransfield E, Drewes G, Droit A, Dunn MJ, Elenitoba-Johnson K, Ewing RM, Van Eyk J, Faca V, Falkner J, Fang X, Fenselau C, Figeys D, Gagné P, Gelfi C, Gevaert K, Gimble JM, Gnad F, Goel R, Gromov P, Hanash SM, Hancock WS, Harsha HC, Hart G, Hays F, He F, Hebbar P, Helsens K, Hermeking H, Hide W, Hjernø K, Hochstrasser DF, Hofmann O, Horn DM, Hruban RH, Ibarrola N, James P, Jensen ON, Jensen PH, Jung P, Kandasamy K, Kheterpal I, Kikuno RF, Korf U, Körner R, Kuster B, Kwon MS, Lee HJ, Lee YJ, Lefevre M, Lehvaslaiho M, Lescuyer P, Levander F, Lim MS, Löbke C, Loo JA, Mann M, Martens L, Martinez-Heredia J, McComb M, McRedmond J, Mehrle A, Menon R, Miller CA, Mischak H, Mohan SS, Mohmood R, Molina H, Moran MF, Morgan JD, Moritz R, Morzel M, Muddiman DC, Nalli A, Navarro JD, Neubert TA, Ohara O, Oliva R, Omenn GS, Oyama M, Paik YK, Pennington K, Pepperkok R, Periaswamy B, Petricoin EF, Poirier GG, Prasad TS, Purvine SO, Rahiman BA, Ramachandran P, Ramachandra YL, Rice RH, Rick J, Ronnholm RH, Salonen J, Sanchez JC, Sayd T, Seshi B, Shankari K, Sheng SJ, Shetty V, Shivakumar K, Simpson RJ, Sirdeshmukh R, Siu KW, Smith JC, Smith RD, States DJ, Sugano S, Sullivan M, Superti-Furga G, Takatalo M, Thongboonkerd V, Trinidad JC, Uhlen M, Vandekerckhove J, Vasilescu J, Veenstra TD, Vidal-Taboada JM, Vihinen M, Wait R, Wang X, Wiemann S, Wu B, Xu T, Yates JR, Zhong J, Zhou M, Zhu Y, Zurbig P, Pandey A.

Nat Biotechnol. 2008 Feb;26(2):164-7. doi: 10.1038/nbt0208-164. No abstract available.

PMID:
18259167
37.

Tumor antigens eliciting autoantibody response in cancer of gingivo-buccal complex.

Shukla S, Govekar RB, Sirdeshmukh R, Sundaram CS, D'Cruz AK, Pathak KA, Kane SV, Zingde SM.

Proteomics Clin Appl. 2007 Dec;1(12):1592-604. doi: 10.1002/prca.200700206.

PMID:
21136657
38.

Onconase action on tRNA(Lys3), the primer for HIV-1 reverse transcription.

Suhasini AN, Sirdeshmukh R.

Biochem Biophys Res Commun. 2007 Nov 16;363(2):304-9. Epub 2007 Sep 4.

PMID:
17888404
39.

Identification of novel allergens of Aspergillus fumigatus using immunoproteomics approach.

Gautam P, Sundaram CS, Madan T, Gade WN, Shah A, Sirdeshmukh R, Sarma PU.

Clin Exp Allergy. 2007 Aug;37(8):1239-49.

PMID:
17651155
40.

Fostering proteomics in India.

Sirdeshmukh R.

J Proteome Res. 2006 Nov;5(11):2879. No abstract available.

PMID:
17124772
41.

Role of proteins in resistance mechanism of Pseudomonas fluorescens against heavy metal induced stress with proteomics approach.

Sharma S, Sundaram CS, Luthra PM, Singh Y, Sirdeshmukh R, Gade WN.

J Biotechnol. 2006 Nov 10;126(3):374-82. Epub 2006 Jun 19.

PMID:
16787678
42.

Transfer RNA cleavages by onconase reveal unusual cleavage sites.

Suhasini AN, Sirdeshmukh R.

J Biol Chem. 2006 May 5;281(18):12201-9. Epub 2006 Feb 23.

43.

Differential protein expression in human gliomas and molecular insights.

Chumbalkar VC, Subhashini C, Dhople VM, Sundaram CS, Jagannadham MV, Kumar KN, Srinivas PN, Mythili R, Rao MK, Kulkarni MJ, Hegde S, Hegde AS, Samual C, Santosh V, Singh L, Sirdeshmukh R.

Proteomics. 2005 Mar;5(4):1167-77.

PMID:
15759318
44.

Proteome analysis of mouse macrophages treated with anthrax lethal toxin.

Chandra H, Gupta PK, Sharma K, Mattoo AR, Garg SK, Gade WN, Sirdeshmukh R, Maithal K, Singh Y.

Biochim Biophys Acta. 2005 Mar 14;1747(2):151-9. Epub 2004 Dec 20.

PMID:
15698949
45.

Entry into cells and selective degradation of tRNAs by a cytotoxic member of the RNase A family.

Saxena SK, Sirdeshmukh R, Ardelt W, Mikulski SM, Shogen K, Youle RJ.

J Biol Chem. 2002 Apr 26;277(17):15142-6. Epub 2002 Feb 11.

46.

Effects of protein RNase inhibitor and substrate on the quaternary structures of bovine seminal RNase.

Murthy BS, De Lorenzo C, Piccoli R, D'Alessio G, Sirdeshmukh R.

Biochemistry. 1996 Apr 2;35(13):3880-5.

PMID:
8672417
47.
48.

Modulation of cytosolic RNase activity by endogenous RNase inhibitor in rat vaginal epithelial cells on estradiol administration.

Rao KS, Sirdeshmukh R, Gupta PD.

FEBS Lett. 1994 Apr 18;343(1):11-4. Erratum in: FEBS Lett 1994 Jul 11;348(2):221.

49.
50.

Processing of Escherichia coli 16S rRNA with bacteriophage lambda leader sequences.

Krych M, Sirdeshmukh R, Gourse R, Schlessinger D.

J Bacteriol. 1987 Dec;169(12):5523-9.

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