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Multiple Origins and Specific Evolution of CRISPR/Cas9 Systems in Minimal Bacteria (Mollicutes).

Ipoutcha T, Tsarmpopoulos I, Talenton V, Gaspin C, Moisan A, Walker CA, Brownlie J, Blanchard A, Thebault P, Sirand-Pugnet P.

Front Microbiol. 2019 Nov 21;10:2701. doi: 10.3389/fmicb.2019.02701. eCollection 2019.


High Prevalence of Integrative and Conjugative Elements Encoding Transcription Activator-Like Effector Repeats in Mycoplasma hominis.

Meygret A, Peuchant O, Dordet-Frisoni E, Sirand-Pugnet P, Citti C, Bébéar C, Béven L, Pereyre S.

Front Microbiol. 2019 Oct 18;10:2385. doi: 10.3389/fmicb.2019.02385. eCollection 2019.


CReasPy-Cloning: A Method for Simultaneous Cloning and Engineering of Megabase-Sized Genomes in Yeast Using the CRISPR-Cas9 System.

Ruiz E, Talenton V, Dubrana MP, Guesdon G, Lluch-Senar M, Salin F, Sirand-Pugnet P, Arfi Y, Lartigue C.

ACS Synth Biol. 2019 Nov 15;8(11):2547-2557. doi: 10.1021/acssynbio.9b00224. Epub 2019 Oct 30.


Vaccination against CCPP in East Africa.

Salt J, Jores J, Labroussaa F, Wako DD, Kairu-Wanyoike SW, Nene V, Stuke K, Mulongo M, Sirand-Pugnet P.

Vet Rec. 2019 Sep 7;185(9):272. doi: 10.1136/vr.l5353. No abstract available. Erratum in: Vet Rec. 2019 Sep 21;185(11):348.


Attenuation of a Pathogenic Mycoplasma Strain by Modification of the obg Gene by Using Synthetic Biology Approaches.

Lartigue C, Valverde Timana Y, Labroussaa F, Schieck E, Liljander A, Sacchini F, Posthaus H, Batailler B, Sirand-Pugnet P, Vashee S, Jores J, Blanchard A.

mSphere. 2019 May 22;4(3). pii: e00030-19. doi: 10.1128/mSphere.00030-19.


Removal of a Subset of Non-essential Genes Fully Attenuates a Highly Virulent Mycoplasma Strain.

Jores J, Ma L, Ssajjakambwe P, Schieck E, Liljander A, Chandran S, Stoffel MH, Cippa V, Arfi Y, Assad-Garcia N, Falquet L, Sirand-Pugnet P, Blanchard A, Lartigue C, Posthaus H, Labroussaa F, Vashee S.

Front Microbiol. 2019 Apr 3;10:664. doi: 10.3389/fmicb.2019.00664. eCollection 2019.


Generation of Mycoplasma hominis gene-targeted mutants by targeting-induced local lesions in genomes (TILLING).

Pereyre S, Bénard C, Brès C, Le Roy C, Mauxion JP, Rideau F, Sirand-Pugnet P, Henrich B, Bébéar C.

BMC Genomics. 2018 Jul 9;19(1):525. doi: 10.1186/s12864-018-4917-1.


Impact of donor-recipient phylogenetic distance on bacterial genome transplantation.

Labroussaa F, Lebaudy A, Baby V, Gourgues G, Matteau D, Vashee S, Sirand-Pugnet P, Rodrigue S, Lartigue C.

Nucleic Acids Res. 2016 Sep 30;44(17):8501-11. doi: 10.1093/nar/gkw688. Epub 2016 Aug 3.


Genome Sequences of Two Tunisian Field Strains of Avian Mycoplasma, M. meleagridis and M. gallinarum.

Yacoub E, Sirand-Pugnet P, Barré A, Blanchard A, Hubert C, Maurier F, Bouilhol E, Ben Abdelmoumen Mardassi B.

Genome Announc. 2016 Jun 16;4(3). pii: e00558-16. doi: 10.1128/genomeA.00558-16.


MIB-MIP is a mycoplasma system that captures and cleaves immunoglobulin G.

Arfi Y, Minder L, Di Primo C, Le Roy A, Ebel C, Coquet L, Claverol S, Vashee S, Jores J, Blanchard A, Sirand-Pugnet P.

Proc Natl Acad Sci U S A. 2016 May 10;113(19):5406-11. doi: 10.1073/pnas.1600546113. Epub 2016 Apr 25.


Complete Genome Sequence of Mycoplasma mycoides subsp. mycoides T1/44, a Vaccine Strain against Contagious Bovine Pleuropneumonia.

Gourgues G, Barré A, Beaudoing E, Weber J, Magdelenat G, Barbe V, Schieck E, Jores J, Vashee S, Blanchard A, Lartigue C, Sirand-Pugnet P.

Genome Announc. 2016 Apr 14;4(2). pii: e00263-16. doi: 10.1128/genomeA.00263-16.


In-Yeast Engineering of a Bacterial Genome Using CRISPR/Cas9.

Tsarmpopoulos I, Gourgues G, Blanchard A, Vashee S, Jores J, Lartigue C, Sirand-Pugnet P.

ACS Synth Biol. 2016 Jan 15;5(1):104-9. doi: 10.1021/acssynbio.5b00196. Epub 2015 Dec 7.


Molecular Epidemiology of Mycoplasma pneumoniae: Genotyping Using Single Nucleotide Polymorphisms and SNaPshot Technology.

Touati A, Blouin Y, Sirand-Pugnet P, Renaudin H, Oishi T, Vergnaud G, Bébéar C, Pereyre S.

J Clin Microbiol. 2015 Oct;53(10):3182-94. doi: 10.1128/JCM.01156-15. Epub 2015 Jul 22.


Genome Sequence of Mycoplasma meleagridis Type Strain 17529.

Yacoub E, Sirand-Pugnet P, Blanchard A, Ben Abdelmoumen Mardassi B.

Genome Announc. 2015 May 21;3(3). pii: e00484-15. doi: 10.1128/genomeA.00484-15.


Integrative conjugative elements are widespread in field isolates of Mycoplasma species pathogenic for ruminants.

Tardy F, Mick V, Dordet-Frisoni E, Marenda MS, Sirand-Pugnet P, Blanchard A, Citti C.

Appl Environ Microbiol. 2015 Mar;81(5):1634-43. doi: 10.1128/AEM.03723-14. Epub 2014 Dec 19.


Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks.

Thébault P, Bourqui R, Benchimol W, Gaspin C, Sirand-Pugnet P, Uricaru R, Dutour I.

Brief Bioinform. 2015 Sep;16(5):795-805. doi: 10.1093/bib/bbu045. Epub 2014 Dec 3.


Chromosomal transfers in mycoplasmas: when minimal genomes go mobile.

Dordet-Frisoni E, Sagné E, Baranowski E, Breton M, Nouvel LX, Blanchard A, Marenda MS, Tardy F, Sirand-Pugnet P, Citti C.

mBio. 2014 Nov 25;5(6):e01958. doi: 10.1128/mBio.01958-14.


Highly dynamic genomic loci drive the synthesis of two types of capsular or secreted polysaccharides within the Mycoplasma mycoides cluster.

Bertin C, Pau-Roblot C, Courtois J, Manso-Silván L, Tardy F, Poumarat F, Citti C, Sirand-Pugnet P, Gaurivaud P, Thiaucourt F.

Appl Environ Microbiol. 2015 Jan;81(2):676-87. doi: 10.1128/AEM.02892-14. Epub 2014 Nov 14.


Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes.

Grosjean H, Breton M, Sirand-Pugnet P, Tardy F, Thiaucourt F, Citti C, Barré A, Yoshizawa S, Fourmy D, de Crécy-Lagard V, Blanchard A.

PLoS Genet. 2014 May 8;10(5):e1004363. doi: 10.1371/journal.pgen.1004363. eCollection 2014 May.


Finishing bacterial genome assemblies with Mix.

Soueidan H, Maurier F, Groppi A, Sirand-Pugnet P, Tardy F, Citti C, Dupuy V, Nikolski M.

BMC Bioinformatics. 2013;14 Suppl 15:S16. doi: 10.1186/1471-2105-14-S15-S16. Epub 2013 Oct 15.


Mycoplasma feriruminatoris sp. nov., a fast growing Mycoplasma species isolated from wild Caprinae.

Jores J, Fischer A, Sirand-Pugnet P, Thomann A, Liebler-Tenorio EM, Schnee C, Santana-Cruz I, Heller M, Frey J.

Syst Appl Microbiol. 2013 Dec;36(8):533-8. doi: 10.1016/j.syapm.2013.07.005. Epub 2013 Sep 6. Erratum in: Syst Appl Microbiol. 2015 Jul;38(5):371.


ICEA of Mycoplasma agalactiae: a new family of self-transmissible integrative elements that confers conjugative properties to the recipient strain.

Dordet Frisoni E, Marenda MS, Sagné E, Nouvel LX, Guérillot R, Glaser P, Blanchard A, Tardy F, Sirand-Pugnet P, Baranowski E, Citti C.

Mol Microbiol. 2013 Sep;89(6):1226-39. doi: 10.1111/mmi.12341. Epub 2013 Aug 16.


Complete Genome Sequence of Mycoplasma putrefaciens Strain 9231, One of the Agents of Contagious Agalactia in Goats.

Dupuy V, Sirand-Pugnet P, Baranowski E, Barré A, Breton M, Couture C, Dordet-Frisoni E, Gaurivaud P, Jacob D, Lemaitre C, Manso-Silván L, Nikolski M, Nouvel LX, Poumarat F, Tardy F, Thébault P, Theil S, Citti C, Blanchard A, Thiaucourt F.

Genome Announc. 2013 Jun 13;1(3). pii: e00354-13. doi: 10.1128/genomeA.00354-13.


Draft Genome Sequences of Mycoplasma alkalescens, Mycoplasma arginini, and Mycoplasma bovigenitalium, Three Species with Equivocal Pathogenic Status for Cattle.

Manso-Silván L, Tardy F, Baranowski E, Barré A, Blanchard A, Breton M, Couture C, Citti C, Dordet-Frisoni E, Dupuy V, Gaurivaud P, Jacob D, Lemaitre C, Nikolski M, Nouvel LX, Poumarat F, Thébault P, Theil S, Thiaucourt F, Sirand-Pugnet P.

Genome Announc. 2013 Jun 13;1(3). pii: e00348-13. doi: 10.1128/genomeA.00348-13.


Draft Genome Sequences of Mycoplasma auris and Mycoplasma yeatsii, Two Species of the Ear Canal of Caprinae.

Dordet-Frisoni E, Baranowski E, Barré A, Blanchard A, Breton M, Couture C, Dupuy V, Gaurivaud P, Jacob D, Lemaitre C, Manso-Silván L, Nikolski M, Nouvel LX, Poumarat F, Sirand-Pugnet P, Thébault P, Theil S, Thiaucourt F, Citti C, Tardy F.

Genome Announc. 2013 Jun 13;1(3). pii: e00280-13. doi: 10.1128/genomeA.00280-13.


Distribution and diversity of mycoplasma plasmids: lessons from cryptic genetic elements.

Breton M, Tardy F, Dordet-Frisoni E, Sagne E, Mick V, Renaudin J, Sirand-Pugnet P, Citti C, Blanchard A.

BMC Microbiol. 2012 Nov 12;12:257. doi: 10.1186/1471-2180-12-257.


Evolutionary history of contagious bovine pleuropneumonia using next generation sequencing of Mycoplasma mycoides Subsp. mycoides "Small Colony".

Dupuy V, Manso-Silván L, Barbe V, Thebault P, Dordet-Frisoni E, Citti C, Poumarat F, Blanchard A, Breton M, Sirand-Pugnet P, Thiaucourt F.

PLoS One. 2012;7(10):e46821. doi: 10.1371/journal.pone.0046821. Epub 2012 Oct 8.


Specific evolution of F1-like ATPases in mycoplasmas.

Béven L, Charenton C, Dautant A, Bouyssou G, Labroussaa F, Sköllermo A, Persson A, Blanchard A, Sirand-Pugnet P.

PLoS One. 2012;7(6):e38793. doi: 10.1371/journal.pone.0038793. Epub 2012 Jun 7.


Emergence of atypical Mycoplasma agalactiae strains harboring a new prophage and associated with an alpine wild ungulate mortality episode.

Tardy F, Baranowski E, Nouvel LX, Mick V, Manso-Silvàn L, Thiaucourt F, Thébault P, Breton M, Sirand-Pugnet P, Blanchard A, Garnier A, Gibert P, Game Y, Poumarat F, Citti C.

Appl Environ Microbiol. 2012 Jul;78(13):4659-68. doi: 10.1128/AEM.00332-12. Epub 2012 Apr 20.


A novel substitution matrix fitted to the compositional bias in Mollicutes improves the prediction of homologous relationships.

Lemaitre C, Barré A, Citti C, Tardy F, Thiaucourt F, Sirand-Pugnet P, Thébault P.

BMC Bioinformatics. 2011 Nov 24;12:457. doi: 10.1186/1471-2105-12-457.


Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective.

Thiaucourt F, Manso-Silvan L, Salah W, Barbe V, Vacherie B, Jacob D, Breton M, Dupuy V, Lomenech AM, Blanchard A, Sirand-Pugnet P.

BMC Genomics. 2011 Feb 16;12:114. doi: 10.1186/1471-2164-12-114.


Comparative genomic and proteomic analyses of two Mycoplasma agalactiae strains: clues to the macro- and micro-events that are shaping mycoplasma diversity.

Nouvel LX, Sirand-Pugnet P, Marenda MS, Sagné E, Barbe V, Mangenot S, Schenowitz C, Jacob D, Barré A, Claverol S, Blanchard A, Citti C.

BMC Genomics. 2010 Feb 2;11:86. doi: 10.1186/1471-2164-11-86.


Life on arginine for Mycoplasma hominis: clues from its minimal genome and comparison with other human urogenital mycoplasmas.

Pereyre S, Sirand-Pugnet P, Beven L, Charron A, Renaudin H, Barré A, Avenaud P, Jacob D, Couloux A, Barbe V, de Daruvar A, Blanchard A, Bébéar C.

PLoS Genet. 2009 Oct;5(10):e1000677. doi: 10.1371/journal.pgen.1000677. Epub 2009 Oct 9.


Occurrence, plasticity, and evolution of the vpma gene family, a genetic system devoted to high-frequency surface variation in Mycoplasma agalactiae.

Nouvel LX, Marenda M, Sirand-Pugnet P, Sagné E, Glew M, Mangenot S, Barbe V, Barré A, Claverol S, Citti C.

J Bacteriol. 2009 Jul;191(13):4111-21. doi: 10.1128/JB.00251-09. Epub 2009 Apr 17.


Unmarked insertional mutagenesis in the bovine pathogen Mycoplasma mycoides subsp. mycoides SC: characterization of a lppQ mutant.

Janis C, Bischof D, Gourgues G, Frey J, Blanchard A, Sirand-Pugnet P.

Microbiology. 2008 Aug;154(Pt 8):2427-2436. doi: 10.1099/mic.0.2008/017640-0.


The tufB-secE-nusG-rplKAJL-rpoB gene cluster of the liberibacters: sequence comparisons, phylogeny and speciation.

Teixeira DC, Eveillard S, Sirand-Pugnet P, Wulff A, Saillard C, Ayres AJ, Bové JM.

Int J Syst Evol Microbiol. 2008 Jun;58(Pt 6):1414-21. doi: 10.1099/ijs.0.65641-0.


Evolution of mollicutes: down a bumpy road with twists and turns.

Sirand-Pugnet P, Citti C, Barré A, Blanchard A.

Res Microbiol. 2007 Dec;158(10):754-66. Epub 2007 Oct 2.


Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome.

Sirand-Pugnet P, Lartigue C, Marenda M, Jacob D, Barré A, Barbe V, Schenowitz C, Mangenot S, Couloux A, Segurens B, de Daruvar A, Blanchard A, Citti C.

PLoS Genet. 2007 May 18;3(5):e75.


Resistance to antimicrobial peptides and stress response in Mycoplasma pulmonis.

Fehri LF, Sirand-Pugnet P, Gourgues G, Jan G, Wróblewski H, Blanchard A.

Antimicrob Agents Chemother. 2005 Oct;49(10):4154-65.


Versatile use of oriC plasmids for functional genomics of Mycoplasma capricolum subsp. capricolum.

Janis C, Lartigue C, Frey J, Wróblewski H, Thiaucourt F, Blanchard A, Sirand-Pugnet P.

Appl Environ Microbiol. 2005 Jun;71(6):2888-93.


Host specificity of mollicutes oriC plasmids: functional analysis of replication origin.

Lartigue C, Blanchard A, Renaudin J, Thiaucourt F, Sirand-Pugnet P.

Nucleic Acids Res. 2003 Nov 15;31(22):6610-8.


Identification of the origin of replication of the Mycoplasma pulmonis chromosome and its use in oriC replicative plasmids.

Cordova CM, Lartigue C, Sirand-Pugnet P, Renaudin J, Cunha RA, Blanchard A.

J Bacteriol. 2002 Oct;184(19):5426-35.


Positive-negative selection and T-DNA stability in Arabidopsis transformation.

Gallego ME, Sirand-Pugnet P, White CI.

Plant Mol Biol. 1999 Jan;39(1):83-93.


Tissue-specific splicing of two mutually exclusive exons of the chicken beta-tropomyosin pre-mRNA: positive and negative regulations.

Gallego ME, Sirand-Pugnet P, Durosay P, Clouet d'Orval B, d'Aubenton-Carafa Y, Brody E, Expert-Bezançon A, Marie J.

Biochimie. 1996;78(6):457-65. Review.


An intronic (A/U)GGG repeat enhances the splicing of an alternative intron of the chicken beta-tropomyosin pre-mRNA.

Sirand-Pugnet P, Durosay P, Brody E, Marie J.

Nucleic Acids Res. 1995 Sep 11;23(17):3501-7.


beta-Tropomyosin pre-mRNA folding around a muscle-specific exon interferes with several steps of spliceosome assembly.

Sirand-Pugnet P, Durosay P, Clouet d'Orval BC, Brody E, Marie J.

J Mol Biol. 1995 Sep 1;251(5):591-602.


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