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Items: 1 to 50 of 98

1.

Distinct and Collaborative Functions of Yb and Armitage in Transposon-Targeting piRNA Biogenesis.

Ishizu H, Kinoshita T, Hirakata S, Komatsuzaki C, Siomi MC.

Cell Rep. 2019 May 7;27(6):1822-1835.e8. doi: 10.1016/j.celrep.2019.04.029.

2.

Requirements for multivalent Yb body assembly in transposon silencing in Drosophila.

Hirakata S, Ishizu H, Fujita A, Tomoe Y, Siomi MC.

EMBO Rep. 2019 Apr 30. pii: e47708. doi: 10.15252/embr.201947708. [Epub ahead of print]

PMID:
31040109
3.

Two distinct transcriptional controls triggered by nuclear Piwi-piRISCs in the Drosophila piRNA pathway.

Sato K, Siomi MC.

Curr Opin Struct Biol. 2018 Dec;53:69-76. doi: 10.1016/j.sbi.2018.06.005. Epub 2018 Jul 7. Review.

PMID:
29990672
4.

Piwi Nuclear Localization and Its Regulatory Mechanism in Drosophila Ovarian Somatic Cells.

Yashiro R, Murota Y, Nishida KM, Yamashiro H, Fujii K, Ogai A, Yamanaka S, Negishi L, Siomi H, Siomi MC.

Cell Rep. 2018 Jun 19;23(12):3647-3657. doi: 10.1016/j.celrep.2018.05.051.

5.

Hierarchical roles of mitochondrial Papi and Zucchini in Bombyx germline piRNA biogenesis.

Nishida KM, Sakakibara K, Iwasaki YW, Yamada H, Murakami R, Murota Y, Kawamura T, Kodama T, Siomi H, Siomi MC.

Nature. 2018 Mar 8;555(7695):260-264. doi: 10.1038/nature25788. Epub 2018 Feb 28.

PMID:
29489748
6.

Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay.

Lucas BA, Lavi E, Shiue L, Cho H, Katzman S, Miyoshi K, Siomi MC, Carmel L, Ares M Jr, Maquat LE.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):968-973. doi: 10.1073/pnas.1715531115. Epub 2018 Jan 16.

7.

PIWI-Interacting RNA in Drosophila: Biogenesis, Transposon Regulation, and Beyond.

Yamashiro H, Siomi MC.

Chem Rev. 2018 Apr 25;118(8):4404-4421. doi: 10.1021/acs.chemrev.7b00393. Epub 2017 Dec 27.

PMID:
29281264
8.

The PIWI-Interacting RNA Molecular Pathway: Insights From Cultured Silkworm Germline Cells.

Sakakibara K, Siomi MC.

Bioessays. 2018 Jan;40(1). doi: 10.1002/bies.201700068. Epub 2017 Nov 22. Review.

PMID:
29164638
9.

Use of the CRISPR-Cas9 system for genome editing in cultured Drosophila ovarian somatic cells.

Ishizu H, Sumiyoshi T, Siomi MC.

Methods. 2017 Aug 15;126:186-192. doi: 10.1016/j.ymeth.2017.05.021. Epub 2017 May 25.

PMID:
28552546
10.

Crystal Structure of Silkworm PIWI-Clade Argonaute Siwi Bound to piRNA.

Matsumoto N, Nishimasu H, Sakakibara K, Nishida KM, Hirano T, Ishitani R, Siomi H, Siomi MC, Nureki O.

Cell. 2016 Oct 6;167(2):484-497.e9. doi: 10.1016/j.cell.2016.09.002. Epub 2016 Sep 29.

11.

Production of Small Noncoding RNAs from the flamenco Locus Is Regulated by the gypsy Retrotransposon of Drosophila melanogaster.

Guida V, Cernilogar FM, Filograna A, De Gregorio R, Ishizu H, Siomi MC, Schotta G, Bellenchi GC, Andrenacci D.

Genetics. 2016 Oct;204(2):631-644. Epub 2016 Aug 24.

12.

Loss of l(3)mbt leads to acquisition of the ping-pong cycle in Drosophila ovarian somatic cells.

Sumiyoshi T, Sato K, Yamamoto H, Iwasaki YW, Siomi H, Siomi MC.

Genes Dev. 2016 Jul 15;30(14):1617-22. doi: 10.1101/gad.283929.116.

13.

Piwi Modulates Chromatin Accessibility by Regulating Multiple Factors Including Histone H1 to Repress Transposons.

Iwasaki YW, Murano K, Ishizu H, Shibuya A, Iyoda Y, Siomi MC, Siomi H, Saito K.

Mol Cell. 2016 Aug 4;63(3):408-19. doi: 10.1016/j.molcel.2016.06.008. Epub 2016 Jul 14.

14.

Inheritance of a Nuclear PIWI from Pluripotent Stem Cells by Somatic Descendants Ensures Differentiation by Silencing Transposons in Planarian.

Shibata N, Kashima M, Ishiko T, Nishimura O, Rouhana L, Misaki K, Yonemura S, Saito K, Siomi H, Siomi MC, Agata K.

Dev Cell. 2016 May 9;37(3):226-37. doi: 10.1016/j.devcel.2016.04.009.

15.

Tudor-domain containing proteins act to make the piRNA pathways more robust in Drosophila.

Sato K, Iwasaki YW, Siomi H, Siomi MC.

Fly (Austin). 2015;9(2):86-90. doi: 10.1080/19336934.2015.1128599.

16.

piRNA biogenesis in the germline: From transcription of piRNA genomic sources to piRNA maturation.

Hirakata S, Siomi MC.

Biochim Biophys Acta. 2016 Jan;1859(1):82-92. doi: 10.1016/j.bbagrm.2015.09.002. Epub 2015 Sep 5. Review.

PMID:
26348412
17.

Immuno-Electron Microscopy and Electron Microscopic In Situ Hybridization for Visualizing piRNA Biogenesis Bodies in Drosophila Ovaries.

Shibata S, Murota Y, Nishimoto Y, Yoshimura M, Nagai T, Okano H, Siomi MC.

Methods Mol Biol. 2015;1328:163-78. doi: 10.1007/978-1-4939-2851-4_12.

PMID:
26324437
18.

TAF11 Assembles the RISC Loading Complex to Enhance RNAi Efficiency.

Liang C, Wang Y, Murota Y, Liu X, Smith D, Siomi MC, Liu Q.

Mol Cell. 2015 Sep 3;59(5):807-18. doi: 10.1016/j.molcel.2015.07.006. Epub 2015 Aug 6.

19.

Krimper Enforces an Antisense Bias on piRNA Pools by Binding AGO3 in the Drosophila Germline.

Sato K, Iwasaki YW, Shibuya A, Carninci P, Tsuchizawa Y, Ishizu H, Siomi MC, Siomi H.

Mol Cell. 2015 Aug 20;59(4):553-63. doi: 10.1016/j.molcel.2015.06.024. Epub 2015 Jul 23.

20.

Somatic Primary piRNA Biogenesis Driven by cis-Acting RNA Elements and trans-Acting Yb.

Ishizu H, Iwasaki YW, Hirakata S, Ozaki H, Iwasaki W, Siomi H, Siomi MC.

Cell Rep. 2015 Jul 21;12(3):429-40. doi: 10.1016/j.celrep.2015.06.035. Epub 2015 Jul 9.

21.

RNA. Phased piRNAs tackle transposons.

Siomi H, Siomi MC.

Science. 2015 May 15;348(6236):756-7. doi: 10.1126/science.aab3004. No abstract available.

PMID:
25977536
22.

Crystal Structure and Activity of the Endoribonuclease Domain of the piRNA Pathway Factor Maelstrom.

Matsumoto N, Sato K, Nishimasu H, Namba Y, Miyakubi K, Dohmae N, Ishitani R, Siomi H, Siomi MC, Nureki O.

Cell Rep. 2015 Apr 21;11(3):366-75. doi: 10.1016/j.celrep.2015.03.030. Epub 2015 Apr 9.

23.

Functional and structural insights into the piRNA factor Maelstrom.

Sato K, Siomi MC.

FEBS Lett. 2015 Jun 22;589(14):1688-93. doi: 10.1016/j.febslet.2015.03.023. Epub 2015 Mar 30. Review.

24.

PIWI-Interacting RNA: Its Biogenesis and Functions.

Iwasaki YW, Siomi MC, Siomi H.

Annu Rev Biochem. 2015;84:405-33. doi: 10.1146/annurev-biochem-060614-034258. Epub 2015 Mar 5. Review.

PMID:
25747396
25.

Gene expression ontogeny of spermatogenesis in the marmoset uncovers primate characteristics during testicular development.

Lin ZY, Hirano T, Shibata S, Seki NM, Kitajima R, Sedohara A, Siomi MC, Sasaki E, Siomi H, Imamura M, Okano H.

Dev Biol. 2015 Apr 1;400(1):43-58. doi: 10.1016/j.ydbio.2015.01.014. Epub 2015 Jan 23.

26.

Respective functions of two distinct Siwi complexes assembled during PIWI-interacting RNA biogenesis in Bombyx germ cells.

Nishida KM, Iwasaki YW, Murota Y, Nagao A, Mannen T, Kato Y, Siomi H, Siomi MC.

Cell Rep. 2015 Jan 13;10(2):193-203. doi: 10.1016/j.celrep.2014.12.013. Epub 2014 Dec 31.

27.

piRNA clusters and open chromatin structure.

Yamanaka S, Siomi MC, Siomi H.

Mob DNA. 2014 Aug 1;5:22. doi: 10.1186/1759-8753-5-22. eCollection 2014. Review.

28.

Yb integrates piRNA intermediates and processing factors into perinuclear bodies to enhance piRISC assembly.

Murota Y, Ishizu H, Nakagawa S, Iwasaki YW, Shibata S, Kamatani MK, Saito K, Okano H, Siomi H, Siomi MC.

Cell Rep. 2014 Jul 10;8(1):103-13. doi: 10.1016/j.celrep.2014.05.043. Epub 2014 Jun 19.

29.

Small RNA profiling and characterization of piRNA clusters in the adult testes of the common marmoset, a model primate.

Hirano T, Iwasaki YW, Lin ZY, Imamura M, Seki NM, Sasaki E, Saito K, Okano H, Siomi MC, Siomi H.

RNA. 2014 Aug;20(8):1223-37. doi: 10.1261/rna.045310.114. Epub 2014 Jun 9.

30.

DmGTSF1 is necessary for Piwi-piRISC-mediated transcriptional transposon silencing in the Drosophila ovary.

Ohtani H, Iwasaki YW, Shibuya A, Siomi H, Siomi MC, Saito K.

Genes Dev. 2013 Aug 1;27(15):1656-61. doi: 10.1101/gad.221515.113.

31.

Piwi-interacting RNAs: biological functions and biogenesis.

Sato K, Siomi MC.

Essays Biochem. 2013;54:39-52. doi: 10.1042/bse0540039. Review.

PMID:
23829526
32.

Purification of dFMR1-containing complexes using tandem affinity purification.

Miyoshi K, Ogino A, Siomi MC, Siomi H.

Methods Mol Biol. 2013;1010:111-21. doi: 10.1007/978-1-62703-411-1_8.

PMID:
23754222
33.

Roles of R2D2, a cytoplasmic D2 body component, in the endogenous siRNA pathway in Drosophila.

Nishida KM, Miyoshi K, Ogino A, Miyoshi T, Siomi H, Siomi MC.

Mol Cell. 2013 Feb 21;49(4):680-91. doi: 10.1016/j.molcel.2012.12.024. Epub 2013 Jan 31.

34.

Biology of PIWI-interacting RNAs: new insights into biogenesis and function inside and outside of germlines.

Ishizu H, Siomi H, Siomi MC.

Genes Dev. 2012 Nov 1;26(21):2361-73. doi: 10.1101/gad.203786.112. Review.

35.

Structure and function of Zucchini endoribonuclease in piRNA biogenesis.

Nishimasu H, Ishizu H, Saito K, Fukuhara S, Kamatani MK, Bonnefond L, Matsumoto N, Nishizawa T, Nakanaga K, Aoki J, Ishitani R, Siomi H, Siomi MC, Nureki O.

Nature. 2012 Nov 8;491(7423):284-7. doi: 10.1038/nature11509. Epub 2012 Oct 14.

PMID:
23064230
36.

Gender-Specific Hierarchy in Nuage Localization of PIWI-Interacting RNA Factors in Drosophila.

Nagao A, Sato K, Nishida KM, Siomi H, Siomi MC.

Front Genet. 2011 Aug 30;2:55. doi: 10.3389/fgene.2011.00055. eCollection 2011.

37.

Maelstrom coordinates microtubule organization during Drosophila oogenesis through interaction with components of the MTOC.

Sato K, Nishida KM, Shibuya A, Siomi MC, Siomi H.

Genes Dev. 2011 Nov 15;25(22):2361-73. doi: 10.1101/gad.174110.111.

38.

Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila.

Cernilogar FM, Onorati MC, Kothe GO, Burroughs AM, Parsi KM, Breiling A, Lo Sardo F, Saxena A, Miyoshi K, Siomi H, Siomi MC, Carninci P, Gilmour DS, Corona DF, Orlando V.

Nature. 2011 Nov 6;480(7377):391-5. doi: 10.1038/nature10492.

39.

Stress signaling etches heritable marks on chromatin.

Siomi H, Siomi MC.

Cell. 2011 Jun 24;145(7):1005-7. doi: 10.1016/j.cell.2011.06.009.

40.

Biochemical analyzes of endogenous argonaute complexes immunopurified with anti-Argonaute monoclonal antibodies.

Miyoshi K, Okada TN, Siomi H, Siomi MC.

Methods Mol Biol. 2011;725:29-43. doi: 10.1007/978-1-61779-046-1_3.

PMID:
21528445
41.

PIWI-interacting small RNAs: the vanguard of genome defence.

Siomi MC, Sato K, Pezic D, Aravin AA.

Nat Rev Mol Cell Biol. 2011 Apr;12(4):246-58. doi: 10.1038/nrm3089. Review.

PMID:
21427766
42.

Small RNA-mediated quiescence of transposable elements in animals.

Saito K, Siomi MC.

Dev Cell. 2010 Nov 16;19(5):687-97. doi: 10.1016/j.devcel.2010.10.011. Review.

43.

Biogenesis pathways of piRNAs loaded onto AGO3 in the Drosophila testis.

Nagao A, Mituyama T, Huang H, Chen D, Siomi MC, Siomi H.

RNA. 2010 Dec;16(12):2503-15. doi: 10.1261/rna.2270710. Epub 2010 Oct 27.

44.

Roles for the Yb body components Armitage and Yb in primary piRNA biogenesis in Drosophila.

Saito K, Ishizu H, Komai M, Kotani H, Kawamura Y, Nishida KM, Siomi H, Siomi MC.

Genes Dev. 2010 Nov 15;24(22):2493-8. doi: 10.1101/gad.1989510. Epub 2010 Oct 21.

45.

A direct role for Hsp90 in pre-RISC formation in Drosophila.

Miyoshi T, Takeuchi A, Siomi H, Siomi MC.

Nat Struct Mol Biol. 2010 Aug;17(8):1024-6. doi: 10.1038/nsmb.1875. Epub 2010 Jul 18. Erratum in: Nat Struct Mol Biol. 2011 Apr;18(4):516.

PMID:
20639883
46.

Posttranscriptional regulation of microRNA biogenesis in animals.

Siomi H, Siomi MC.

Mol Cell. 2010 May 14;38(3):323-32. doi: 10.1016/j.molcel.2010.03.013. Review.

47.

How does the royal family of Tudor rule the PIWI-interacting RNA pathway?

Siomi MC, Mannen T, Siomi H.

Genes Dev. 2010 Apr 1;24(7):636-46. doi: 10.1101/gad.1899210. Review.

48.

Molecular mechanisms that funnel RNA precursors into endogenous small-interfering RNA and microRNA biogenesis pathways in Drosophila.

Miyoshi K, Miyoshi T, Hartig JV, Siomi H, Siomi MC.

RNA. 2010 Mar;16(3):506-15. doi: 10.1261/rna.1952110. Epub 2010 Jan 19.

49.

piRNA-mediated silencing in Drosophila germlines.

Siomi MC, Miyoshi T, Siomi H.

Semin Cell Dev Biol. 2010 Sep;21(7):754-9. doi: 10.1016/j.semcdb.2010.01.011. Epub 2010 Jan 18. Review.

PMID:
20080197
50.

Functional involvement of Tudor and dPRMT5 in the piRNA processing pathway in Drosophila germlines.

Nishida KM, Okada TN, Kawamura T, Mituyama T, Kawamura Y, Inagaki S, Huang H, Chen D, Kodama T, Siomi H, Siomi MC.

EMBO J. 2009 Dec 16;28(24):3820-31. doi: 10.1038/emboj.2009.365.

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