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Tracking a moving user in indoor environments using Bluetooth low energy beacons.

Surian D, Kim V, Menon R, Dunn AG, Sintchenko V, Coiera E.

J Biomed Inform. 2019 Sep 9:103288. doi: 10.1016/j.jbi.2019.103288. [Epub ahead of print]


Genome Sequences of Enteroinvasive Escherichia coli Sequence Type 6, 99, and 311 Strains Acquired in Asia Pacific.

Dhakal R, Wang Q, Howard P, Sintchenko V.

Microbiol Resour Announc. 2019 Sep 5;8(36). pii: e00944-19. doi: 10.1128/MRA.00944-19.


Long-term impact of pneumococcal conjugate vaccines on invasive disease and pneumonia hospitalisations in Indigenous and non-Indigenous Australians.

Meder KN, Jayasinghe S, Beard F, Dey A, Kirk M, Cook H, Strachan J, Sintchenko V, Smith H, Giele C, Howden B, Krause V, McIntyre P.

Clin Infect Dis. 2019 Aug 7. pii: ciz731. doi: 10.1093/cid/ciz731. [Epub ahead of print]


Corrigendum to "Whole-genome sequencing reveals genetic signature of bedaquiline resistance in a clinical isolate of Mycobacterium tuberculosis" [J Glob Antimicrob Resist 15 (2018) 103-104].

Chawla K, Martinez E, Kumar A, Shenoy VP, Sintchenko V.

J Glob Antimicrob Resist. 2019 Jun;17:326. doi: 10.1016/j.jgar.2019.05.011. Epub 2019 Jun 3. No abstract available.


Infection, colonization and shedding of Campylobacter and Salmonella in animals and their contribution to human disease: A review.

Rukambile E, Sintchenko V, Muscatello G, Kock R, Alders R.

Zoonoses Public Health. 2019 Sep;66(6):562-578. doi: 10.1111/zph.12611. Epub 2019 Jun 9. Review.


Acquired Drug Resistance: Recognizing the Potential of Repurposed Drugs.

Alffenaar JC, Sintchenko V, Marais BJ.

Clin Infect Dis. 2019 Apr 26. pii: ciz334. doi: 10.1093/cid/ciz334. [Epub ahead of print] No abstract available.


Pertactin-Negative and Filamentous Hemagglutinin-Negative Bordetella pertussis, Australia, 2013-2017.

Xu Z, Octavia S, Luu LDW, Payne M, Timms V, Tay CY, Keil AD, Sintchenko V, Guiso N, Lan R.

Emerg Infect Dis. 2019 Jun;25(6):1196-1199. doi: 10.3201/eid2506.180240.


Effect of two alternative methods of pooling sputum prior to testing for tuberculosis with genexpert MTB/RIF.

Phuong NTB, Anh NT, Van Son N, Sintchenko V, Ho J, Fox GJ, Nhung NV, Marks GB.

BMC Infect Dis. 2019 Apr 27;19(1):347. doi: 10.1186/s12879-019-3778-9.


Network properties of salmonella epidemics.

Cliff OM, Sintchenko V, Sorrell TC, Vadlamudi K, McLean N, Prokopenko M.

Sci Rep. 2019 Apr 16;9(1):6159. doi: 10.1038/s41598-019-42582-3.


Tuberculosis risk factors and Mycobacterium tuberculosis transmission among HIV-infected patients in Vietnam.

Mai TQ, Martinez E, Menon R, Van Anh NT, Hien NT, Lan NH, Giang DC, Hang PT, Thuong PH, Van Huan H, Hoang NP, Nhung NV, Hoa NB, Marais BJ, Sintchenko V.

Tuberculosis (Edinb). 2019 Mar;115:67-75. doi: 10.1016/ Epub 2019 Feb 7. No abstract available.


The importance of public health genomics for ensuring health security for Australia.

Williamson DA, Kirk MD, Sintchenko V, Howden BP.

Med J Aust. 2019 Apr;210(7):295-297.e1. doi: 10.5694/mja2.50063. Epub 2019 Mar 19. No abstract available.


A One Health investigation of Salmonella enterica serovar Wangata in north-eastern New South Wales, Australia, 2016-2017.

Collins J, Simpson KMJ, Bell G, Durrheim DN, Hill-Cawthorne GA, Hope K, Howard P, Kohlenberg T, Lawrence K, Lilly K, Porigneaux P, Sintchenko V, Wang Q, Ward MP, Wiethoelter A, Mor SM, Flint J.

Epidemiol Infect. 2019 Jan;147:e150. doi: 10.1017/S0950268819000475.


Evaluation of the BioGX BD-Max PCR assay for detection of pathogenic Bordetella.

Timms VJ, Fong W, Jeoffreys NJ, Sintchenko V.

Pathology. 2019 Apr;51(3):323-324. doi: 10.1016/j.pathol.2018.10.018. Epub 2019 Mar 5. No abstract available.


Cross-Border Movement of Highly Drug-Resistant Mycobacterium tuberculosis from Papua New Guinea to Australia through Torres Strait Protected Zone, 2010-2015.

Bainomugisa A, Pandey S, Donnan E, Simpson G, Foster J, Lavu E, Hiasihri S, McBryde ES, Moke R, Vincent S, Sintchenko V, Marais BJ, Coin LJM, Coulter C.

Emerg Infect Dis. 2019 Mar;25(3):406-415. doi: 10.3201/eid2503.181003.


Standards for MIC testing that apply to the majority of bacterial pathogens should also be enforced for Mycobacterium tuberculosis complex.

Schön T, Matuschek E, Mohamed S, Utukuri M, Heysell S, Alffenaar JW, Shin S, Martinez E, Sintchenko V, Maurer FP, Keller PM, Kahlmeter G, Köser CU.

Clin Microbiol Infect. 2019 Apr;25(4):403-405. doi: 10.1016/j.cmi.2019.01.019. Epub 2019 Feb 14. No abstract available.


Advances in Clinical Sample Preparation for Identification and Characterization of Bacterial Pathogens Using Metagenomics.

Bachmann NL, Rockett RJ, Timms VJ, Sintchenko V.

Front Public Health. 2018 Dec 12;6:363. doi: 10.3389/fpubh.2018.00363. eCollection 2018. Review.


Whole Genome Sequencing of Australian Candida glabrata Isolates Reveals Genetic Diversity and Novel Sequence Types.

Biswas C, Marcelino VR, Van Hal S, Halliday C, Martinez E, Wang Q, Kidd S, Kennedy K, Marriott D, Morrissey CO, Arthur I, Weeks K, Slavin MA, Sorrell TC, Sintchenko V, Meyer W, Chen SC.

Front Microbiol. 2018 Dec 3;9:2946. doi: 10.3389/fmicb.2018.02946. eCollection 2018.


Comparison of the Whole Cell Proteome and Secretome of Epidemic Bordetella pertussis Strains From the 2008-2012 Australian Epidemic Under Sulfate-Modulating Conditions.

Luu LDW, Octavia S, Zhong L, Raftery MJ, Sintchenko V, Lan R.

Front Microbiol. 2018 Nov 27;9:2851. doi: 10.3389/fmicb.2018.02851. eCollection 2018.


Cluster of invasive Mycobacteria chimaera infections following cardiac surgery demonstrating novel clinical features and risks of aortic valve replacement.

Overton K, Mennon V, Mothobi N, Neild B, Martinez E, Masters J, Grant P, Akhunji Z, Su WY, Torda A, Whyte CM, Lloyd A, Weatherall C, Hofmeyr A, Foo H, Brookes K, Marriott D, Sintchenko V, Clezy K, Konecny P, Post JJ.

Intern Med J. 2018 Dec;48(12):1514-1520. doi: 10.1111/imj.14093.


Genome-wide comparison of Corynebacterium diphtheriae isolates from Australia identifies differences in the Pan-genomes between respiratory and cutaneous strains.

Timms VJ, Nguyen T, Crighton T, Yuen M, Sintchenko V.

BMC Genomics. 2018 Dec 4;19(1):869. doi: 10.1186/s12864-018-5147-2.


Genome-wide analysis of Streptococcus pneumoniae serogroup 19 in the decade after the introduction of pneumococcal conjugate vaccines in Australia.

Rockett RJ, Oftadeh S, Bachmann NL, Timms VJ, Kong F, Gilbert GL, Sintchenko V.

Sci Rep. 2018 Nov 16;8(1):16969. doi: 10.1038/s41598-018-35270-1.


Mycobacterium tuberculosis Drug Resistance and Transmission among Human Immunodeficiency Virus-Infected Patients in Ho Chi Minh City, Vietnam.

Mai TQ, Martinez E, Menon R, Van Anh NT, Hien NT, Marais BJ, Sintchenko V.

Am J Trop Med Hyg. 2018 Dec;99(6):1397-1406. doi: 10.4269/ajtmh.18-0185.


Burkholderia lata Infections from Intrinsically Contaminated Chlorhexidine Mouthwash, Australia, 2016.

Leong LEX, Lagana D, Carter GP, Wang Q, Smith K, Stinear TP, Shaw D, Sintchenko V, Wesselingh SL, Bastian I, Rogers GB.

Emerg Infect Dis. 2018 Nov;24(11):2109-2111. doi: 10.3201/eid2411.171929.


Prediction of Susceptibility to First-Line Tuberculosis Drugs by DNA Sequencing.

CRyPTIC Consortium and the 100,000 Genomes Project, Allix-Béguec C, Arandjelovic I, Bi L, Beckert P, Bonnet M, Bradley P, Cabibbe AM, Cancino-Muñoz I, Caulfield MJ, Chaiprasert A, Cirillo DM, Clifton DA, Comas I, Crook DW, De Filippo MR, de Neeling H, Diel R, Drobniewski FA, Faksri K, Farhat MR, Fleming J, Fowler P, Fowler TA, Gao Q, Gardy J, Gascoyne-Binzi D, Gibertoni-Cruz AL, Gil-Brusola A, Golubchik T, Gonzalo X, Grandjean L, He G, Guthrie JL, Hoosdally S, Hunt M, Iqbal Z, Ismail N, Johnston J, Khanzada FM, Khor CC, Kohl TA, Kong C, Lipworth S, Liu Q, Maphalala G, Martinez E, Mathys V, Merker M, Miotto P, Mistry N, Moore DAJ, Murray M, Niemann S, Omar SV, Ong RT, Peto TEA, Posey JE, Prammananan T, Pym A, Rodrigues C, Rodrigues M, Rodwell T, Rossolini GM, Sánchez Padilla E, Schito M, Shen X, Shendure J, Sintchenko V, Sloutsky A, Smith EG, Snyder M, Soetaert K, Starks AM, Supply P, Suriyapol P, Tahseen S, Tang P, Teo YY, Thuong TNT, Thwaites G, Tortoli E, van Soolingen D, Walker AS, Walker TM, Wilcox M, Wilson DJ, Wyllie D, Yang Y, Zhang H, Zhao Y, Zhu B.

N Engl J Med. 2018 Oct 11;379(15):1403-1415. doi: 10.1056/NEJMoa1800474. Epub 2018 Sep 26.


Whole-genome sequencing reveals genetic signature of bedaquiline resistance in a clinical isolate of Mycobacterium tuberculosis.

Chawla K, Martinez E, Kumar A, Shenoy VP, Sintchenko V.

J Glob Antimicrob Resist. 2018 Dec;15:103-104. doi: 10.1016/j.jgar.2018.09.006. Epub 2018 Sep 21. Erratum in: J Glob Antimicrob Resist. 2019 Jun;17:326.


Retrospective use of whole genome sequencing to better understand an outbreak of Salmonella enterica serovar Mbandaka in New South Wales, Australia.

Lindsay C, Flint J, Lilly K, Hope K, Wang Q, Howard P, Sintchenko V, Durrheim DN.

Western Pac Surveill Response J. 2018 Apr 23;9(2):20-25. doi: 10.5365/wpsar.2017.8.4.008. eCollection 2018 Apr-Jun.


Mutations associated with in vitro resistance to bedaquiline in Mycobacterium tuberculosis isolates in Australia.

Martinez E, Hennessy D, Jelfs P, Crighton T, Chen SC, Sintchenko V.

Tuberculosis (Edinb). 2018 Jul;111:31-34. doi: 10.1016/ Epub 2018 Apr 25.


Novel multiplex PCR assay for identification and subtyping of enteroinvasive Escherichia coli and differentiation from Shigella based on target genes selected by comparative genomics.

Dhakal R, Wang Q, Lan R, Howard P, Sintchenko V.

J Med Microbiol. 2018 Sep;67(9):1257-1264. doi: 10.1099/jmm.0.000784. Epub 2018 Jul 3.


Recurrence of tuberculosis in a low-incidence setting: a retrospective cross-sectional study augmented by whole genome sequencing.

Parvaresh L, Crighton T, Martinez E, Bustamante A, Chen S, Sintchenko V.

BMC Infect Dis. 2018 Jun 7;18(1):265. doi: 10.1186/s12879-018-3164-z.


Novel Salmonella enterica Serovar Typhimurium Genotype Levels as Herald of Seasonal Salmonellosis Epidemics.

Sotomayor C, Wang Q, Arnott A, Howard P, Hope K, Lan R, Sintchenko V.

Emerg Infect Dis. 2018 Jun;24(6):1079-1082. doi: 10.3201/eid2406.171096.


Seven Salmonella Typhimurium Outbreaks in Australia Linked by Trace-Back and Whole Genome Sequencing.

Ford L, Wang Q, Stafford R, Ressler KA, Norton S, Shadbolt C, Hope K, Franklin N, Krsteski R, Carswell A, Carter GP, Seemann T, Howard P, Valcanis M, Castillo CFS, Bates J, Glass K, Williamson DA, Sintchenko V, Howden BP, Kirk MD.

Foodborne Pathog Dis. 2018 May;15(5):285-292. doi: 10.1089/fpd.2017.2353. Epub 2018 Mar 20.


Relentless spread and adaptation of non-typeable vanA vancomycin-resistant Enterococcus faecium: a genome-wide investigation.

van Hal SJ, Beukers AG, Timms VJ, Ellem JA, Taylor P, Maley MW, Newton PJ, Ferguson JK, Lee A, Chen SC, Sintchenko V.

J Antimicrob Chemother. 2018 Jun 1;73(6):1487-1491. doi: 10.1093/jac/dky074.


Multidrug-Resistant Salmonella enterica 4,[5],12:i:- Sequence Type 34, New South Wales, Australia, 2016-2017.

Arnott A, Wang Q, Bachmann N, Sadsad R, Biswas C, Sotomayor C, Howard P, Rockett R, Wiklendt A, Iredell JR, Sintchenko V.

Emerg Infect Dis. 2018 Apr;24(4):751-753. doi: 10.3201/eid2404.171619.


Proteomic Adaptation of Australian Epidemic Bordetella pertussis.

Luu LDW, Octavia S, Zhong L, Raftery MJ, Sintchenko V, Lan R.

Proteomics. 2018 Apr;18(8):e1700237. doi: 10.1002/pmic.201700237.


Detection and incidence of Bordetella holmesii in respiratory specimens from patients with pertussis-like symptoms in New South Wales, Australia.

Fong W, Timms V, Holmes N, Sintchenko V.

Pathology. 2018 Apr;50(3):322-326. doi: 10.1016/j.pathol.2017.10.014. Epub 2018 Feb 15.


Whole Genome Sequencing of Candida glabrata for Detection of Markers of Antifungal Drug Resistance.

Biswas C, Chen SC, Halliday C, Martinez E, Rockett RJ, Wang Q, Timms VJ, Dhakal R, Sadsad R, Kennedy KJ, Playford G, Marriott DJ, Slavin MA, Sorrell TC, Sintchenko V.

J Vis Exp. 2017 Dec 28;(130). doi: 10.3791/56714.


Incorporating Whole-Genome Sequencing into Public Health Surveillance: Lessons from Prospective Sequencing of Salmonella Typhimurium in Australia.

Ford L, Carter GP, Wang Q, Seemann T, Sintchenko V, Glass K, Williamson DA, Howard P, Valcanis M, Castillo CFS, Sait M, Howden BP, Kirk MD.

Foodborne Pathog Dis. 2018 Mar;15(3):161-167. doi: 10.1089/fpd.2017.2352. Epub 2018 Jan 16.


Genome Sequencing Links Persistent Outbreak of Legionellosis in Sydney (New South Wales, Australia) to an Emerging Clone of Legionella pneumophila Sequence Type 211.

Timms VJ, Rockett R, Bachmann NL, Martinez E, Wang Q, Chen SC, Jeoffreys N, Howard PJ, Smith A, Adamson S, Gilmour R, Sheppeard V, Sintchenko V.

Appl Environ Microbiol. 2018 Feb 14;84(5). pii: e02020-17. doi: 10.1128/AEM.02020-17. Print 2018 Mar 1.


Aiming for zero tuberculosis transmission in low-burden countries.

Marais BJ, Walker TM, Cirillo DM, Raviglione M, Abubakar I, van der Werf MJ, Boehme C, Niemann S, Castro KG, Zumla A, Sintchenko V, Crook DW.

Lancet Respir Med. 2017 Nov;5(11):846-848. doi: 10.1016/S2213-2600(17)30382-X. Epub 2017 Oct 13. No abstract available.


Comparative genomics of Australian and international isolates of Salmonella Typhimurium: correlation of core genome evolution with CRISPR and prophage profiles.

Fu S, Hiley L, Octavia S, Tanaka MM, Sintchenko V, Lan R.

Sci Rep. 2017 Aug 29;7(1):9733. doi: 10.1038/s41598-017-06079-1.


Drug resistance and Mycobacterium tuberculosis strain diversity in TB/HIV co-infected patients in Ho Chi Minh city, Vietnam.

Mai TQ, Van Anh NT, Hien NT, Lan NH, Giang DC, Hang PTT, Lan NTN, Marais BJ, Sintchenko V.

J Glob Antimicrob Resist. 2017 Sep;10:154-160. doi: 10.1016/j.jgar.2017.07.003. Epub 2017 Jul 22.


Francisella tularensis ssp. holarctica in Ringtail Possums, Australia.

Eden JS, Rose K, Ng J, Shi M, Wang Q, Sintchenko V, Holmes EC.

Emerg Infect Dis. 2017 Jul;23(7):1198-1201. doi: 10.3201/eid2307.161863.


Epidemiology and whole genome sequencing of an ongoing point-source Salmonella Agona outbreak associated with sushi consumption in western Sydney, Australia 2015.

Thompson CK, Wang Q, Bag SK, Franklin N, Shadbolt CT, Howard P, Fearnley EJ, Quinn HE, Sintchenko V, Hope KG.

Epidemiol Infect. 2017 Jul;145(10):2062-2071. doi: 10.1017/S0950268817000693. Epub 2017 May 2.


Pooling sputum samples to improve the feasibility of Xpert® MTB/RIF in systematic screening for tuberculosis.

Ho J, Jelfs P, Nguyen PT, Sintchenko V, Fox GJ, Marks GB.

Int J Tuberc Lung Dis. 2017 May 1;21(5):503-508. doi: 10.5588/ijtld.16.0846.


Identification of genetic markers of resistance to echinocandins, azoles and 5-fluorocytosine in Candida glabrata by next-generation sequencing: a feasibility study.

Biswas C, Chen SC, Halliday C, Kennedy K, Playford EG, Marriott DJ, Slavin MA, Sorrell TC, Sintchenko V.

Clin Microbiol Infect. 2017 Sep;23(9):676.e7-676.e10. doi: 10.1016/j.cmi.2017.03.014. Epub 2017 Mar 23.


Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infection.

Octavia S, Wang Q, Tanaka MM, Sintchenko V, Lan R.

Infect Genet Evol. 2017 Jul;51:17-20. doi: 10.1016/j.meegid.2017.03.004. Epub 2017 Mar 7.


Characterisation of the Bordetella pertussis secretome under different media.

Luu LDW, Octavia S, Zhong L, Raftery M, Sintchenko V, Lan R.

J Proteomics. 2017 Mar 31;158:43-51. doi: 10.1016/j.jprot.2017.02.010. Epub 2017 Feb 24.


Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium.

Fu S, Octavia S, Wang Q, Tanaka MM, Tay CY, Sintchenko V, Lan R.

Front Microbiol. 2016 Dec 26;7:2002. doi: 10.3389/fmicb.2016.02002. eCollection 2016.


Epidemic spread of multidrug-resistant tuberculosis in China.

Marais BJ, Sintchenko V.

Lancet Infect Dis. 2017 Mar;17(3):238-239. doi: 10.1016/S1473-3099(16)30526-6. Epub 2016 Dec 3. No abstract available.


Transmission of multi-drug resistant tuberculosis in Mongolia is driven by Beijing strains of Mycobacterium tuberculosis resistant to all first-line drugs.

Gurjav U, Erkhembayar B, Burneebaatar B, Narmandakh E, Tumenbayar O, Hill-Cawthorne GA, Marais BJ, Sintchenko V.

Tuberculosis (Edinb). 2016 Dec;101:49-53. doi: 10.1016/ Epub 2016 Jul 26.


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