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Items: 1 to 50 of 138

1.

Granulicella sibirica sp. nov., a psychrotolerant acidobacterium isolated from an organic soil layer in forested tundra, West Siberia.

Oshkin IY, Kulichevskaya IS, Rijpstra WIC, Sinninghe Damsté JS, Rakitin AL, Ravin NV, Dedysh SN.

Int J Syst Evol Microbiol. 2019 Feb 18. doi: 10.1099/ijsem.0.003290. [Epub ahead of print]

PMID:
30775959
2.

Bisnorgammacerane traces predatory pressure and the persistent rise of algal ecosystems after Snowball Earth.

van Maldegem LM, Sansjofre P, Weijers JWH, Wolkenstein K, Strother PK, Wörmer L, Hefter J, Nettersheim BJ, Hoshino Y, Schouten S, Sinninghe Damsté JS, Nath N, Griesinger C, Kuznetsov NB, Elie M, Elvert M, Tegelaar E, Gleixner G, Hallmann C.

Nat Commun. 2019 Jan 29;10(1):476. doi: 10.1038/s41467-019-08306-x.

3.

Natrarchaeobius chitinivorans gen. nov., sp. nov., and Natrarchaeobius halalkaliphilus sp. nov., alkaliphilic, chitin-utilizing haloarchaea from hypersaline alkaline lakes.

Sorokin DY, Elcheninov AG, Toshchakov SV, Bale NJ, Sinninghe Damsté JS, Khijniak TV, Kublanov IV.

Syst Appl Microbiol. 2019 Jan 8. pii: S0723-2020(18)30438-7. doi: 10.1016/j.syapm.2019.01.001. [Epub ahead of print]

4.

Corrigendum to "Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes" [Syst. Appl. Microbiol. 41 (2018) 355-362].

Sorokin DY, Khijniak TV, Kostrikina NA, Elcheninov AG, Toshchakov SV, Bale NJ, Sinninghe Damsté JS, Kublanov IV.

Syst Appl Microbiol. 2018 Dec 11. pii: S0723-2020(18)30492-2. doi: 10.1016/j.syapm.2018.11.007. [Epub ahead of print] No abstract available.

PMID:
30551955
5.

Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands.

Belova SE, Ravin NV, Pankratov TA, Rakitin AL, Ivanova AA, Beletsky AV, Mardanov AV, Sinninghe Damsté JS, Dedysh SN.

Front Microbiol. 2018 Nov 19;9:2775. doi: 10.3389/fmicb.2018.02775. eCollection 2018.

6.

Molecular fossils from phytoplankton reveal secular Pco2 trend over the Phanerozoic.

Witkowski CR, Weijers JWH, Blais B, Schouten S, Sinninghe Damsté JS.

Sci Adv. 2018 Nov 28;4(11):eaat4556. doi: 10.1126/sciadv.aat4556. eCollection 2018 Nov.

7.

Redox-dependent niche differentiation provides evidence for multiple bacterial sources of glycerol tetraether lipids in lakes.

Weber Y, Sinninghe Damsté JS, Zopfi J, De Jonge C, Gilli A, Schubert CJ, Lepori F, Lehmann MF, Niemann H.

Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):10926-10931. doi: 10.1073/pnas.1805186115. Epub 2018 Oct 9.

8.

A combined lipidomic and 16S rRNA gene amplicon sequencing approach reveals archaeal sources of intact polar lipids in the stratified Black Sea water column.

Sollai M, Villanueva L, Hopmans EC, Reichart GJ, Sinninghe Damsté JS.

Geobiology. 2019 Jan;17(1):91-109. doi: 10.1111/gbi.12316. Epub 2018 Oct 3.

PMID:
30281902
9.

Methanonatronarchaeum thermophilum gen. nov., sp. nov. and 'Candidatus Methanohalarchaeum thermophilum', extremely halo(natrono)philic methyl-reducing methanogens from hypersaline lakes comprising a new euryarchaeal class Methanonatronarchaeia classis nov.

Sorokin DY, Merkel AY, Abbas B, Makarova KS, Rijpstra WIC, Koenen M, Sinninghe Damsté JS, Galinski EA, Koonin EV, van Loosdrecht MCM.

Int J Syst Evol Microbiol. 2018 Jul;68(7):2199-2208. doi: 10.1099/ijsem.0.002810. Epub 2018 May 29.

PMID:
29781801
10.

Life on the edge: active microbial communities in the Kryos MgCl2-brine basin at very low water activity.

Steinle L, Knittel K, Felber N, Casalino C, de Lange G, Tessarolo C, Stadnitskaia A, Sinninghe Damsté JS, Zopfi J, Lehmann MF, Treude T, Niemann H.

ISME J. 2018 Jun;12(6):1414-1426. doi: 10.1038/s41396-018-0107-z. Epub 2018 Apr 17.

PMID:
29666446
11.

Edaphobacter lichenicola sp. nov., a member of the family Acidobacteriaceae from lichen-dominated forested tundra.

Belova SE, Suzina NE, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2018 Feb 21. doi: 10.1099/ijsem.0.002663. [Epub ahead of print]

PMID:
29465339
12.

Oleiharenicola alkalitolerans gen. nov., sp. nov., a new member of the phylum Verrucomicrobia isolated from an oilsands tailings pond.

Rochman FF, Kim JJ, Rijpstra WIC, Sinninghe Damsté JS, Schumann P, Verbeke TJ, Dunfield PF.

Int J Syst Evol Microbiol. 2018 Feb 20. doi: 10.1099/ijsem.0.002624. [Epub ahead of print]

PMID:
29461179
13.

Climate induced human demographic and cultural change in northern Europe during the mid-Holocene.

Warden L, Moros M, Neumann T, Shennan S, Timpson A, Manning K, Sollai M, Wacker L, Perner K, Häusler K, Leipe T, Zillén L, Kotilainen A, Jansen E, Schneider RR, Oeberst R, Arz H, Sinninghe Damsté JS.

Sci Rep. 2017 Nov 10;7(1):15251. doi: 10.1038/s41598-017-14353-5.

14.

Tundrisphaera lichenicola gen. nov., sp. nov., a psychrotolerant representative of the family Isosphaeraceae from lichen-dominated tundra soils.

Kulichevskaya IS, Ivanova AA, Detkova EN, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3583-3589. doi: 10.1099/ijsem.0.002172. Epub 2017 Aug 22.

PMID:
28829024
15.

Response of the North Atlantic surface and intermediate ocean structure to climate warming of MIS 11.

Kandiano ES, van der Meer MT, Schouten S, Fahl K, Sinninghe Damsté JS, Bauch HA.

Sci Rep. 2017 Apr 10;7:46192. doi: 10.1038/srep46192.

16.

Benthic primary producers are key to sustain the Wadden Sea food web: stable carbon isotope analysis at landscape scale.

Christianen MJA, Middelburg JJ, Holthuijsen SJ, Jouta J, Compton TJ, van der Heide T, Piersma T, Sinninghe Damsté JS, van der Veer HW, Schouten S, Olff H.

Ecology. 2017 Jun;98(6):1498-1512. doi: 10.1002/ecy.1837.

PMID:
28369845
17.

Impact of Seasonal Hypoxia on Activity and Community Structure of Chemolithoautotrophic Bacteria in a Coastal Sediment.

Lipsewers YA, Vasquez-Cardenas D, Seitaj D, Schauer R, Hidalgo-Martinez S, Sinninghe Damsté JS, Meysman FJR, Villanueva L, Boschker HTS.

Appl Environ Microbiol. 2017 May 1;83(10). pii: e03517-16. doi: 10.1128/AEM.03517-16. Print 2017 May 15.

18.

Lipids as paleomarkers to constrain the marine nitrogen cycle.

Rush D, Sinninghe Damsté JS.

Environ Microbiol. 2017 Jun;19(6):2119-2132. doi: 10.1111/1462-2920.13682. Epub 2017 Feb 28. Review.

19.

The tropical lapse rate steepened during the Last Glacial Maximum.

Loomis SE, Russell JM, Verschuren D, Morrill C, De Cort G, Sinninghe Damsté JS, Olago D, Eggermont H, Street-Perrott FA, Kelly MA.

Sci Adv. 2017 Jan 27;3(1):e1600815. doi: 10.1126/sciadv.1600815. eCollection 2017 Jan.

20.

Actinocrinis puniceicyclus gen. nov., sp. nov., an actinobacterium isolated from an acidic spring.

Kim JJ, Marjerrison CE, Cornish Shartau SL, Brady AL, Sharp CE, Rijpstra WIC, Sinninghe Damsté JS, Schumann P, Grasby SE, Dunfield PF.

Int J Syst Evol Microbiol. 2017 Mar;67(3):602-609. doi: 10.1099/ijsem.0.001667. Epub 2017 Apr 3.

PMID:
27902294
21.

Fimbriiglobus ruber gen. nov., sp. nov., a Gemmata-like planctomycete from Sphagnum peat bog and the proposal of Gemmataceae fam. nov.

Kulichevskaya IS, Ivanova AA, Baulina OI, Rijpstra WI, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2017 Feb;67(2):218-224. doi: 10.1099/ijsem.0.001598. Epub 2017 Mar 16.

PMID:
27902209
22.

Abundance and Diversity of Denitrifying and Anammox Bacteria in Seasonally Hypoxic and Sulfidic Sediments of the Saline Lake Grevelingen.

Lipsewers YA, Hopmans EC, Meysman FJ, Sinninghe Damsté JS, Villanueva L.

Front Microbiol. 2016 Oct 20;7:1661. eCollection 2016.

23.

A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment.

Jung MY, Kim JG, Sinninghe Damsté JS, Rijpstra WI, Madsen EL, Kim SJ, Hong H, Si OJ, Kerou M, Schleper C, Rhee SK.

Environ Microbiol Rep. 2016 Dec;8(6):983-992. doi: 10.1111/1758-2229.12477. Epub 2016 Oct 24.

PMID:
27700018
24.

Hydrogen peroxide detoxification is a key mechanism for growth of ammonia-oxidizing archaea.

Kim JG, Park SJ, Sinninghe Damsté JS, Schouten S, Rijpstra WI, Jung MY, Kim SJ, Gwak JH, Hong H, Si OJ, Lee S, Madsen EL, Rhee SK.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):7888-93. doi: 10.1073/pnas.1605501113. Epub 2016 Jun 23.

25.

The influence of vegetation on soil water repellency-markers and soil hydrophobicity.

Mao J, Nierop KGJ, Rietkerk M, Sinninghe Damsté JS, Dekker SC.

Sci Total Environ. 2016 Oct 1;566-567:608-620. doi: 10.1016/j.scitotenv.2016.05.077. Epub 2016 May 27.

PMID:
27236626
26.

Phenotypic and Genomic Properties of Chitinispirillum alkaliphilum gen. nov., sp. nov., A Haloalkaliphilic Anaerobic Chitinolytic Bacterium Representing a Novel Class in the Phylum Fibrobacteres.

Sorokin DY, Rakitin AL, Gumerov VM, Beletsky AV, Sinninghe Damsté JS, Mardanov AV, Ravin NV.

Front Microbiol. 2016 Mar 31;7:407. doi: 10.3389/fmicb.2016.00407. eCollection 2016.

27.

Methylovulum psychrotolerans sp. nov., a cold-adapted methanotroph from low-temperature terrestrial environments, and emended description of the genus Methylovulum.

Oshkin IY, Belova SE, Danilova OV, Miroshnikov KK, Rijpstra WI, Sinninghe Damsté JS, Liesack W, Dedysh SN.

Int J Syst Evol Microbiol. 2016 Jun;66(6):2417-23. doi: 10.1099/ijsem.0.001046. Epub 2016 Mar 31.

PMID:
27031985
28.

Halanaeroarchaeum sulfurireducens gen. nov., sp. nov., the first obligately anaerobic sulfur-respiring haloarchaeon, isolated from a hypersaline lake.

Sorokin DY, Kublanov IV, Yakimov MM, Rijpstra WI, Sinninghe Damsté JS.

Int J Syst Evol Microbiol. 2016 Jun;66(6):2377-81. doi: 10.1099/ijsem.0.001041. Epub 2016 Mar 31.

PMID:
27031647
29.

Factors Controlling the Stable Nitrogen Isotopic Composition (δ15N) of Lipids in Marine Animals.

Svensson E, Schouten S, Hopmans EC, Middelburg JJ, Sinninghe Damsté JS.

PLoS One. 2016 Jan 5;11(1):e0146321. doi: 10.1371/journal.pone.0146321. eCollection 2016.

30.

Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov.

Kulichevskaya IS, Ivanova AA, Suzina NE, Rijpstra WIC, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2016 Feb;66(2):837-844. doi: 10.1099/ijsem.0.000799. Epub 2015 Nov 26.

PMID:
26611145
31.

Compound-specific stable isotope analysis of nitrogen-containing intact polar lipids.

Svensson E, Schouten S, Stam A, Middelburg JJ, Sinninghe Damsté JS.

Rapid Commun Mass Spectrom. 2015 Dec 15;29(23):2263-71. doi: 10.1002/rcm.7393.

PMID:
26522319
32.

Lysine and novel hydroxylysine lipids in soil bacteria: amino acid membrane lipid response to temperature and pH in Pseudopedobacter saltans.

Moore EK, Hopmans EC, Rijpstra WI, Sánchez-Andrea I, Villanueva L, Wienk H, Schoutsen F, Stams AJ, Sinninghe Damsté JS.

Front Microbiol. 2015 Jun 29;6:637. doi: 10.3389/fmicb.2015.00637. eCollection 2015.

33.

Abundant Trimethylornithine Lipids and Specific Gene Sequences Are Indicative of Planctomycete Importance at the Oxic/Anoxic Interface in Sphagnum-Dominated Northern Wetlands.

Moore EK, Villanueva L, Hopmans EC, Rijpstra WI, Mets A, Dedysh SN, Sinninghe Damsté JS.

Appl Environ Microbiol. 2015 Sep;81(18):6333-44. doi: 10.1128/AEM.00324-15. Epub 2015 Jul 6.

34.

Impact of metabolism and growth phase on the hydrogen isotopic composition of microbial fatty acids.

Heinzelmann SM, Villanueva L, Sinke-Schoen D, Sinninghe Damsté JS, Schouten S, van der Meer MT.

Front Microbiol. 2015 May 8;6:408. doi: 10.3389/fmicb.2015.00408. eCollection 2015.

35.

Planctomicrobium piriforme gen. nov., sp. nov., a stalked planctomycete from a littoral wetland of a boreal lake.

Kulichevskaya IS, Ivanova AA, Detkova EN, Rijpstra WI, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2015 May;65(Pt 5):1659-65. doi: 10.1099/ijs.0.000154. Epub 2015 Feb 27.

PMID:
25724745
36.

Isolation and characterization of a prokaryotic cell organelle from the anammox bacterium Kuenenia stuttgartiensis.

Neumann S, Wessels HJ, Rijpstra WI, Sinninghe Damsté JS, Kartal B, Jetten MS, van Niftrik L.

Mol Microbiol. 2014 Nov;94(4):794-802. doi: 10.1111/mmi.12816. Epub 2014 Oct 22.

37.

Seasonality and depth distribution of the abundance and activity of ammonia oxidizing microorganisms in marine coastal sediments (North Sea).

Lipsewers YA, Bale NJ, Hopmans EC, Schouten S, Sinninghe Damsté JS, Villanueva L.

Front Microbiol. 2014 Sep 5;5:472. doi: 10.3389/fmicb.2014.00472. eCollection 2014.

38.

Are Marine Group II Euryarchaeota significant contributors to tetraether lipids in the ocean?

Schouten S, Villanueva L, Hopmans EC, van der Meer MT, Sinninghe Damsté JS.

Proc Natl Acad Sci U S A. 2014 Oct 14;111(41):E4285. doi: 10.1073/pnas.1416176111. Epub 2014 Sep 19. No abstract available.

39.

Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4.

Sinninghe Damsté JS, Rijpstra WI, Hopmans EC, Foesel BU, Wüst PK, Overmann J, Tank M, Bryant DA, Dunfield PF, Houghton K, Stott MB.

Appl Environ Microbiol. 2014 Sep;80(17):5207-18. doi: 10.1128/AEM.01066-14. Epub 2014 Jun 13.

40.

Paludibaculum fermentans gen. nov., sp. nov., a facultative anaerobe capable of dissimilatory iron reduction from subdivision 3 of the Acidobacteria.

Kulichevskaya IS, Suzina NE, Rijpstra WI, Sinninghe Damsté JS, Dedysh SN.

Int J Syst Evol Microbiol. 2014 Aug;64(Pt 8):2857-64. doi: 10.1099/ijs.0.066175-0. Epub 2014 May 27.

PMID:
24867171
41.

Rapid short-term cooling following the Chicxulub impact at the Cretaceous-Paleogene boundary.

Vellekoop J, Sluijs A, Smit J, Schouten S, Weijers JW, Sinninghe Damsté JS, Brinkhuis H.

Proc Natl Acad Sci U S A. 2014 May 27;111(21):7537-41. doi: 10.1073/pnas.1319253111. Epub 2014 May 12.

42.

Depth-related distribution of a key gene of the tetraether lipid biosynthetic pathway in marine Thaumarchaeota.

Villanueva L, Schouten S, Sinninghe Damsté JS.

Environ Microbiol. 2015 Oct;17(10):3527-39. doi: 10.1111/1462-2920.12508. Epub 2014 Jun 2.

PMID:
24813867
43.

Occurrence and activity of anammox bacteria in surface sediments of the southern North Sea.

Bale NJ, Villanueva L, Fan H, Stal LJ, Hopmans EC, Schouten S, Sinninghe Damsté JS.

FEMS Microbiol Ecol. 2014 Jul;89(1):99-110. doi: 10.1111/1574-6941.12338. Epub 2014 May 8.

44.

A mesophilic, autotrophic, ammonia-oxidizing archaeon of thaumarchaeal group I.1a cultivated from a deep oligotrophic soil horizon.

Jung MY, Park SJ, Kim SJ, Kim JG, Sinninghe Damsté JS, Jeon CO, Rhee SK.

Appl Environ Microbiol. 2014 Jun;80(12):3645-55.

45.

Fossilization and degradation of archaeal intact polar tetraether lipids in deeply buried marine sediments (Peru Margin).

Lengger SK, Hopmans EC, Sinninghe Damsté JS, Schouten S.

Geobiology. 2014 May;12(3):212-20. doi: 10.1111/gbi.12081. Epub 2014 Mar 10.

PMID:
24612345
46.

Nitrolancea hollandica gen. nov., sp. nov., a chemolithoautotrophic nitrite-oxidizing bacterium isolated from a bioreactor belonging to the phylum Chloroflexi.

Sorokin DY, Vejmelkova D, Lücker S, Streshinskaya GM, Rijpstra WI, Sinninghe Damsté JS, Kleerbezem R, van Loosdrecht M, Muyzer G, Daims H.

Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):1859-65. doi: 10.1099/ijs.0.062232-0. Epub 2014 Feb 26.

PMID:
24573161
47.

Autotrophic carbon dioxide fixation via the Calvin-Benson-Bassham cycle by the denitrifying methanotroph "Candidatus Methylomirabilis oxyfera".

Rasigraf O, Kool DM, Jetten MS, Sinninghe Damsté JS, Ettwig KF.

Appl Environ Microbiol. 2014 Apr;80(8):2451-60. doi: 10.1128/AEM.04199-13. Epub 2014 Feb 7.

48.

Critical assessment of glyco- and phospholipid separation by using silica chromatography.

Heinzelmann SM, Bale NJ, Hopmans EC, Sinninghe Damsté JS, Schouten S, van der Meer MT.

Appl Environ Microbiol. 2014 Jan;80(1):360-5. doi: 10.1128/AEM.02817-13. Epub 2013 Oct 25.

49.

Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils.

Crowe MA, Power JF, Morgan XC, Dunfield PF, Lagutin K, Rijpstra IC, Vyssotski GN, Sinninghe Damste JS, Houghton KM, Ryan JL, Stott MB.

Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):220-7. doi: 10.1099/ijs.0.055079-0. Epub 2013 Sep 18. Erratum in: Int J Syst Evol Microbiol. 2014 Mar;64(Pt 3):1074. Rijpstra, W I C [removed]; Vyssotski, G N S [added].

PMID:
24048862
50.

Novel mono-, di-, and trimethylornithine membrane lipids in northern wetland planctomycetes.

Moore EK, Hopmans EC, Rijpstra WI, Villanueva L, Dedysh SN, Kulichevskaya IS, Wienk H, Schoutsen F, Sinninghe Damsté JS.

Appl Environ Microbiol. 2013 Nov;79(22):6874-84. doi: 10.1128/AEM.02169-13. Epub 2013 Aug 30.

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