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Items: 36

1.

Oceanographic habitat and the coral microbiomes of urban-impacted reefs.

Rosales SM, Sinigalliano C, Gidley M, Jones PR, Gramer LJ.

PeerJ. 2019 Sep 10;7:e7552. doi: 10.7717/peerj.7552. eCollection 2019.

2.

Effect of beach management policies on recreational water quality.

Kelly EA, Feng Z, Gidley ML, Sinigalliano CD, Kumar N, Donahue AG, Reniers AJHM, Solo-Gabriele HM.

J Environ Manage. 2018 Apr 15;212:266-277. doi: 10.1016/j.jenvman.2018.02.012. Epub 2018 Feb 22.

3.

Differential Impacts of Land-Based Sources of Pollution on the Microbiota of Southeast Florida Coral Reefs.

Staley C, Kaiser T, Gidley ML, Enochs IC, Jones PR, Goodwin KD, Sinigalliano CD, Sadowsky MJ, Chun CL.

Appl Environ Microbiol. 2017 May 1;83(10). pii: e03378-16. doi: 10.1128/AEM.03378-16. Print 2017 May 15.

4.

Faecal pollution along the southeastern coast of Florida and insight into the use of pepper mild mottle virus as an indicator.

Symonds EM, Sinigalliano C, Gidley M, Ahmed W, McQuaig-Ulrich SM, Breitbart M.

J Appl Microbiol. 2016 Nov;121(5):1469-1481. doi: 10.1111/jam.13252.

5.

Multi-laboratory survey of qPCR enterococci analysis method performance in U.S. coastal and inland surface waters.

Haugland RA, Siefring S, Varma M, Oshima KH, Sivaganesan M, Cao Y, Raith M, Griffith J, Weisberg SB, Noble RT, Blackwood AD, Kinzelman J, Anan'eva T, Bushon RN, Stelzer EA, Harwood VJ, Gordon KV, Sinigalliano C.

J Microbiol Methods. 2016 Apr;123:114-25. doi: 10.1016/j.mimet.2016.01.017. Epub 2016 Feb 2.

PMID:
26844886
6.

The ocean sampling day consortium.

Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, Abdallah RZ, Sonnenschein EC, Cariou T, O'Gara F, Jackson S, Orlic S, Steinke M, Busch J, Duarte B, Caçador I, Canning-Clode J, Bobrova O, Marteinsson V, Reynisson E, Loureiro CM, Luna GM, Quero GM, Löscher CR, Kremp A, DeLorenzo ME, Øvreås L, Tolman J, LaRoche J, Penna A, Frischer M, Davis T, Katherine B, Meyer CP, Ramos S, Magalhães C, Jude-Lemeilleur F, Aguirre-Macedo ML, Wang S, Poulton N, Jones S, Collin R, Fuhrman JA, Conan P, Alonso C, Stambler N, Goodwin K, Yakimov MM, Baltar F, Bodrossy L, Van De Kamp J, Frampton DM, Ostrowski M, Van Ruth P, Malthouse P, Claus S, Deneudt K, Mortelmans J, Pitois S, Wallom D, Salter I, Costa R, Schroeder DC, Kandil MM, Amaral V, Biancalana F, Santana R, Pedrotti ML, Yoshida T, Ogata H, Ingleton T, Munnik K, Rodriguez-Ezpeleta N, Berteaux-Lecellier V, Wecker P, Cancio I, Vaulot D, Bienhold C, Ghazal H, Chaouni B, Essayeh S, Ettamimi S, Zaid el H, Boukhatem N, Bouali A, Chahboune R, Barrijal S, Timinouni M, El Otmani F, Bennani M, Mea M, Todorova N, Karamfilov V, Ten Hoopen P, Cochrane G, L'Haridon S, Bizsel KC, Vezzi A, Lauro FM, Martin P, Jensen RM, Hinks J, Gebbels S, Rosselli R, De Pascale F, Schiavon R, Dos Santos A, Villar E, Pesant S, Cataletto B, Malfatti F, Edirisinghe R, Silveira JA, Barbier M, Turk V, Tinta T, Fuller WJ, Salihoglu I, Serakinci N, Ergoren MC, Bresnan E, Iriberri J, Nyhus PA, Bente E, Karlsen HE, Golyshin PN, Gasol JM, Moncheva S, Dzhembekova N, Johnson Z, Sinigalliano CD, Gidley ML, Zingone A, Danovaro R, Tsiamis G, Clark MS, Costa AC, El Bour M, Martins AM, Collins RE, Ducluzeau AL, Martinez J, Costello MJ, Amaral-Zettler LA, Gilbert JA, Davies N, Field D, Glöckner FO.

Gigascience. 2015 Jun 19;4:27. doi: 10.1186/s13742-015-0066-5. eCollection 2015.

7.

Dynamics of marine bacterial community diversity of the coastal waters of the reefs, inlets, and wastewater outfalls of southeast Florida.

Campbell AM, Fleisher J, Sinigalliano C, White JR, Lopez JV.

Microbiologyopen. 2015 Jun;4(3):390-408. doi: 10.1002/mbo3.245. Epub 2015 Mar 5.

8.

Use of quantitative real-time PCR for direct detection of serratia marcescens in marine and other aquatic environments.

Joyner J, Wanless D, Sinigalliano CD, Lipp EK.

Appl Environ Microbiol. 2014 Mar;80(5):1679-83. doi: 10.1128/AEM.02755-13. Epub 2013 Dec 27.

9.

Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study.

Layton BA, Cao Y, Ebentier DL, Hanley K, Ballesté E, Brandão J, Byappanahalli M, Converse R, Farnleitner AH, Gentry-Shields J, Gidley ML, Gourmelon M, Lee CS, Lee J, Lozach S, Madi T, Meijer WG, Noble R, Peed L, Reischer GH, Rodrigues R, Rose JB, Schriewer A, Sinigalliano C, Srinivasan S, Stewart J, Van De Werfhorst LC, Wang D, Whitman R, Wuertz S, Jay J, Holden PA, Boehm AB, Shanks O, Griffith JF.

Water Res. 2013 Nov 15;47(18):6897-908. doi: 10.1016/j.watres.2013.05.060. Epub 2013 Jul 5.

PMID:
23992621
10.

Performance evaluation of canine-associated Bacteroidales assays in a multi-laboratory comparison study.

Schriewer A, Goodwin KD, Sinigalliano CD, Cox AM, Wanless D, Bartkowiak J, Ebentier DL, Hanley KT, Ervin J, Deering LA, Shanks OC, Peed LA, Meijer WG, Griffith JF, SantoDomingo J, Jay JA, Holden PA, Wuertz S.

Water Res. 2013 Nov 15;47(18):6909-20. doi: 10.1016/j.watres.2013.03.062. Epub 2013 Jul 5.

PMID:
23916711
11.

Multi-laboratory evaluations of the performance of Catellicoccus marimammalium PCR assays developed to target gull fecal sources.

Sinigalliano CD, Ervin JS, Van De Werfhorst LC, Badgley BD, Ballesté E, Bartkowiak J, Boehm AB, Byappanahalli M, Goodwin KD, Gourmelon M, Griffith J, Holden PA, Jay J, Layton B, Lee C, Lee J, Meijer WG, Noble R, Raith M, Ryu H, Sadowsky MJ, Schriewer A, Wang D, Wanless D, Whitman R, Wuertz S, Santo Domingo JW.

Water Res. 2013 Nov 15;47(18):6883-96. doi: 10.1016/j.watres.2013.02.059. Epub 2013 Jul 5.

PMID:
23916157
12.

Evaluation of the repeatability and reproducibility of a suite of qPCR-based microbial source tracking methods.

Ebentier DL, Hanley KT, Cao Y, Badgley BD, Boehm AB, Ervin JS, Goodwin KD, Gourmelon M, Griffith JF, Holden PA, Kelty CA, Lozach S, McGee C, Peed LA, Raith M, Ryu H, Sadowsky MJ, Scott EA, Santo Domingo J, Schriewer A, Sinigalliano CD, Shanks OC, Van De Werfhorst LC, Wang D, Wuertz S, Jay JA.

Water Res. 2013 Nov 15;47(18):6839-48. doi: 10.1016/j.watres.2013.01.060. Epub 2013 Jul 5.

PMID:
23911226
13.

Human-associated methicillin-resistant Staphylococcus aureus from a subtropical recreational marine beach.

Plano LR, Shibata T, Garza AC, Kish J, Fleisher JM, Sinigalliano CD, Gidley ML, Withum K, Elmir SM, Hower S, Jackson CR, Barrett JB, Cleary T, Davidson M, Davis J, Mukherjee S, Fleming LE, Solo-Gabriele HM.

Microb Ecol. 2013 May;65(4):1039-51. doi: 10.1007/s00248-013-0216-1. Epub 2013 Apr 4.

PMID:
23553001
14.

Clonally related methicillin-resistant Staphylococcus aureus isolated from short-finned pilot whales (Globicephala macrorhynchus), human volunteers, and a bayfront cetacean rehabilitation facility.

Hower S, Phillips MC, Brodsky M, Dameron A, Tamargo MA, Salazar NC, Jackson CR, Barrett JB, Davidson M, Davis J, Mukherjee S, Ewing RY, Gidley ML, Sinigalliano CD, Johns L, Johnson FE 3rd, Adebanjo O, Plano LR.

Microb Ecol. 2013 May;65(4):1024-38. doi: 10.1007/s00248-013-0178-3. Epub 2013 Mar 19.

PMID:
23508733
15.

Interlaboratory comparison of real-time PCR protocols for quantification of general fecal indicator bacteria.

Shanks OC, Sivaganesan M, Peed L, Kelty CA, Blackwood AD, Greene MR, Noble RT, Bushon RN, Stelzer EA, Kinzelman J, Anan'eva T, Sinigalliano C, Wanless D, Griffith J, Cao Y, Weisberg S, Harwood VJ, Staley C, Oshima KH, Varma M, Haugland RA.

Environ Sci Technol. 2012 Jan 17;46(2):945-53. doi: 10.1021/es2031455. Epub 2011 Dec 16. Erratum in: Environ Sci Technol. 2012 Feb 21;46(4):2478.

PMID:
22133009
16.

New USEPA water quality criteria by 2012: GOMA concerns and recommendations.

Gooch-Moore J, Goodwin KD, Dorsey C, Ellender RD, Mott JB, Ornelas M, Sinigalliano C, Vincent B, Whiting D, Wolfe SH; Gulf of Mexico Alliance (GOMA), Water Quality Priority Issue Team, GOMA Pathogens Workgroup Writing Team.

J Water Health. 2011 Dec;9(4):718-33. doi: 10.2166/wh.2011.156.

PMID:
22048431
17.

Daily measures of microbes and human health at a non-point source marine beach.

Abdelzaher AM, Wright ME, Ortega C, Hasan AR, Shibata T, Solo-Gabriele HM, Kish J, Withum K, He G, Elmir SM, Bonilla JA, Bonilla TD, Palmer CJ, Scott TM, Lukasik J, Harwood VJ, McQuaig S, Sinigalliano CD, Gidley ML, Wanless D, Plano LR, Garza AC, Zhu X, Stewart JR, Dickerson JW, Yampara-Iquise H, Carson C, Fleisher JM, Fleming LE.

J Water Health. 2011 Sep;9(3):443-57. doi: 10.2166/wh.2011.146.

PMID:
21976192
18.

Indicator microbes correlate with pathogenic bacteria, yeasts and helminthes in sand at a subtropical recreational beach site.

Shah AH, Abdelzaher AM, Phillips M, Hernandez R, Solo-Gabriele HM, Kish J, Scorzetti G, Fell JW, Diaz MR, Scott TM, Lukasik J, Harwood VJ, McQuaig S, Sinigalliano CD, Gidley ML, Wanless D, Ager A, Lui J, Stewart JR, Plano LR, Fleming LE.

J Appl Microbiol. 2011 Jun;110(6):1571-83. doi: 10.1111/j.1365-2672.2011.05013.x. Epub 2011 Apr 28.

19.

Shedding of Staphylococcus aureus and methicillin-resistant Staphylococcus aureus from adult and pediatric bathers in marine waters.

Plano LR, Garza AC, Shibata T, Elmir SM, Kish J, Sinigalliano CD, Gidley ML, Miller G, Withum K, Fleming LE, Solo-Gabriele HM.

BMC Microbiol. 2011 Jan 6;11(1):5. doi: 10.1186/1471-2180-11-5.

20.

Evaluation of conventional and alternative monitoring methods for a recreational marine beach with nonpoint source of fecal contamination.

Shibata T, Solo-Gabriele HM, Sinigalliano CD, Gidley ML, Plano LR, Fleisher JM, Wang JD, Elmir SM, He G, Wright ME, Abdelzaher AM, Ortega C, Wanless D, Garza AC, Kish J, Scott T, Hollenbeck J, Backer LC, Fleming LE.

Environ Sci Technol. 2010 Nov 1;44(21):8175-81. doi: 10.1021/es100884w.

21.

Traditional and molecular analyses for fecal indicator bacteria in non-point source subtropical recreational marine waters.

Sinigalliano CD, Fleisher JM, Gidley ML, Solo-Gabriele HM, Shibata T, Plano LR, Elmir SM, Wanless D, Bartkowiak J, Boiteau R, Withum K, Abdelzaher AM, He G, Ortega C, Zhu X, Wright ME, Kish J, Hollenbeck J, Scott T, Backer LC, Fleming LE.

Water Res. 2010 Jul;44(13):3763-72. doi: 10.1016/j.watres.2010.04.026. Epub 2010 Apr 29.

22.

The BEACHES Study: health effects and exposures from non-point source microbial contaminants in subtropical recreational marine waters.

Fleisher JM, Fleming LE, Solo-Gabriele HM, Kish JK, Sinigalliano CD, Plano L, Elmir SM, Wang JD, Withum K, Shibata T, Gidley ML, Abdelzaher A, He G, Ortega C, Zhu X, Wright M, Hollenbeck J, Backer LC.

Int J Epidemiol. 2010 Oct;39(5):1291-8. doi: 10.1093/ije/dyq084. Epub 2010 Jun 3.

23.

Viable cell sorting of dinoflagellates by multiparametric flow cytometry.

Sinigalliano CD, Winshell J, Guerrero MA, Scorzetti G, Fell JW, Eaton RW, Brand L, Rein KS.

Phycologia. 2009 Jul 1;48(4):249-257.

24.
25.

Presence of pathogens and indicator microbes at a non-point source subtropical recreational marine beach.

Abdelzaher AM, Wright ME, Ortega C, Solo-Gabriele HM, Miller G, Elmir S, Newman X, Shih P, Bonilla JA, Bonilla TD, Palmer CJ, Scott T, Lukasik J, Harwood VJ, McQuaig S, Sinigalliano C, Gidley M, Plano LR, Zhu X, Wang JD, Fleming LE.

Appl Environ Microbiol. 2010 Feb;76(3):724-32. doi: 10.1128/AEM.02127-09. Epub 2009 Dec 4.

26.

Pepper mild mottle virus as an indicator of fecal pollution.

Rosario K, Symonds EM, Sinigalliano C, Stewart J, Breitbart M.

Appl Environ Microbiol. 2009 Nov;75(22):7261-7. doi: 10.1128/AEM.00410-09. Epub 2009 Sep 18.

27.

Quantitative evaluation of enterococci and Bacteroidales released by adults and toddlers in marine water.

Elmir SM, Shibata T, Solo-Gabriele HM, Sinigalliano CD, Gidley ML, Miller G, Plano LR, Kish J, Withum K, Fleming LE.

Water Res. 2009 Oct;43(18):4610-6. doi: 10.1016/j.watres.2009.07.006. Epub 2009 Jul 31.

28.

The coastal environment and human health: microbial indicators, pathogens, sentinels and reservoirs.

Stewart JR, Gast RJ, Fujioka RS, Solo-Gabriele HM, Meschke JS, Amaral-Zettler LA, Del Castillo E, Polz MF, Collier TK, Strom MS, Sinigalliano CD, Moeller PD, Holland AF.

Environ Health. 2008 Nov 7;7 Suppl 2:S3. doi: 10.1186/1476-069X-7-S2-S3. Review.

29.

Impacts of Hurricanes Katrina and Rita on the microbial landscape of the New Orleans area.

Sinigalliano CD, Gidley ML, Shibata T, Whitman D, Dixon TH, Laws E, Hou A, Bachoon D, Brand L, Amaral-Zettler L, Gast RJ, Steward GF, Nigro OD, Fujioka R, Betancourt WQ, Vithanage G, Mathews J, Fleming LE, Solo-Gabriele HM.

Proc Natl Acad Sci U S A. 2007 May 22;104(21):9029-34. Epub 2007 May 8.

30.

Localization of polyketide synthase encoding genes to the toxic dinoflagellate Karenia brevis.

Snyder RV, Guerrero MA, Sinigalliano CD, Winshell J, Perez R, Lopez JV, Rein KS.

Phytochemistry. 2005 Aug;66(15):1767-80.

31.

Visualization of the cbbL gene in healthy and starved chemoautotrophic nitrifying bacteria.

Sinigalliano CD, Jones RD, Kuhn DN, Guerrero MA.

Curr Microbiol. 2003 Aug;47(2):77-83.

PMID:
14506851
32.

In situ reverse transcription to detect the cbbL gene and visualize RuBisCO in chemoautotrophic nitrifying bacteria.

Sinigalliano CD, Kuhn DN, Jones RD, Guerrero MA.

Lett Appl Microbiol. 2001 Jun;32(6):388-93.

33.
34.

Amplification of the amoA gene from diverse species of ammonium-oxidizing bacteria and from an indigenous bacterial population from seawater.

Sinigalliano CD, Kuhn DN, Jones RD.

Appl Environ Microbiol. 1995 Jul;61(7):2702-6. Erratum in: Appl Environ Microbiol 1995 Nov;61(11):4140.

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