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Items: 49


Leaf shape is a predictor of fruit quality and cultivar performance in tomato.

Rowland SD, Zumstein K, Nakayama H, Cheng Z, Flores AM, Chitwood DH, Maloof JN, Sinha NR.

New Phytol. 2019 Dec 27. doi: 10.1111/nph.16403. [Epub ahead of print]


Decoding the gene coexpression network underlying the ability of Gevuina avellana to live in diverse light conditions.

Ostria-Gallardo E, Ranjan A, Ichihashi Y, Corcuera LJ, Sinha NR.

New Phytol. 2018 Oct;220(1):278-287. doi: 10.1111/nph.15278. Epub 2018 Jun 29.


Convergent Evolution and the Diverse Ontogenetic Origins of Tendrils in Angiosperms.

Sousa-Baena MS, Sinha NR, Hernandes-Lopes J, Lohmann LG.

Front Plant Sci. 2018 Apr 3;9:403. doi: 10.3389/fpls.2018.00403. eCollection 2018. Review.


The molecular control of tendril development in angiosperms.

Sousa-Baena MS, Lohmann LG, Hernandes-Lopes J, Sinha NR.

New Phytol. 2018 May;218(3):944-958. doi: 10.1111/nph.15073. Epub 2018 Mar 9. Review.


How Do Plants and Phytohormones Accomplish Heterophylly, Leaf Phenotypic Plasticity, in Response to Environmental Cues.

Nakayama H, Sinha NR, Kimura S.

Front Plant Sci. 2017 Oct 4;8:1717. doi: 10.3389/fpls.2017.01717. eCollection 2017. Review.


Nuclear Transcriptomes at High Resolution Using Retooled INTACT.

Reynoso MA, Pauluzzi GC, Kajala K, Cabanlit S, Velasco J, Bazin J, Deal R, Sinha NR, Brady SM, Bailey-Serres J.

Plant Physiol. 2018 Jan;176(1):270-281. doi: 10.1104/pp.17.00688. Epub 2017 Sep 27.


Transcriptome Dynamics and Potential Roles of Sox6 in the Postnatal Heart.

An CI, Ichihashi Y, Peng J, Sinha NR, Hagiwara N.

PLoS One. 2016 Nov 10;11(11):e0166574. doi: 10.1371/journal.pone.0166574. eCollection 2016.


Left-right leaf asymmetry in decussate and distichous phyllotactic systems.

Martinez CC, Chitwood DH, Smith RS, Sinha NR.

Philos Trans R Soc Lond B Biol Sci. 2016 Dec 19;371(1710). pii: 20150412.


A sister of PIN1 gene in tomato (Solanum lycopersicum) defines leaf and flower organ initiation patterns by maintaining epidermal auxin flux.

Martinez CC, Koenig D, Chitwood DH, Sinha NR.

Dev Biol. 2016 Nov 1;419(1):85-98. doi: 10.1016/j.ydbio.2016.08.011. Epub 2016 Aug 20.


A New Advanced Backcross Tomato Population Enables High Resolution Leaf QTL Mapping and Gene Identification.

Fulop D, Ranjan A, Ofner I, Covington MF, Chitwood DH, West D, Ichihashi Y, Headland L, Zamir D, Maloof JN, Sinha NR.

G3 (Bethesda). 2016 Oct 13;6(10):3169-3184. doi: 10.1534/g3.116.030536.


Using gene networks in EvoDevo analyses.

Sinha NR, Rowland SD, Ichihashi Y.

Curr Opin Plant Biol. 2016 Oct;33:133-139. doi: 10.1016/j.pbi.2016.06.016. Epub 2016 Jul 22. Review.


eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato.

Ranjan A, Budke JM, Rowland SD, Chitwood DH, Kumar R, Carriedo L, Ichihashi Y, Zumstein K, Maloof JN, Sinha NR.

Plant Physiol. 2016 Sep;172(1):328-40. doi: 10.1104/pp.16.00289. Epub 2016 Jul 14.


Evolutionary and Environmental Forces Sculpting Leaf Development.

Chitwood DH, Sinha NR.

Curr Biol. 2016 Apr 4;26(7):R297-306. doi: 10.1016/j.cub.2016.02.033. Review.


Transcriptomic analysis suggests a key role for SQUAMOSA PROMOTER BINDING PROTEIN LIKE, NAC and YUCCA genes in the heteroblastic development of the temperate rainforest tree Gevuina avellana (Proteaceae).

Ostria-Gallardo E, Ranjan A, Chitwood DH, Kumar R, Townsley BT, Ichihashi Y, Corcuera LJ, Sinha NR.

New Phytol. 2016 Apr;210(2):694-708. doi: 10.1111/nph.13776. Epub 2015 Dec 18.


Domestication selected for deceleration of the circadian clock in cultivated tomato.

Müller NA, Wijnen CL, Srinivasan A, Ryngajllo M, Ofner I, Lin T, Ranjan A, West D, Maloof JN, Sinha NR, Huang S, Zamir D, Jiménez-Gómez JM.

Nat Genet. 2016 Jan;48(1):89-93. doi: 10.1038/ng.3447. Epub 2015 Nov 16.


Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology.

Chitwood DH, Kumar R, Ranjan A, Pelletier JM, Townsley BT, Ichihashi Y, Martinez CC, Zumstein K, Harada JJ, Maloof JN, Sinha NR.

Plant Physiol. 2015 Nov;169(3):2030-47. doi: 10.1104/pp.15.01229. Epub 2015 Sep 17.


Role of 5'TG3'-interacting factors (TGIFs) in Vorinostat (HDAC inhibitor)-mediated Corneal Fibrosis Inhibition.

Sharma A, Sinha NR, Siddiqui S, Mohan RR.

Mol Vis. 2015 Aug 28;21:974-84. eCollection 2015.


BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction.

Townsley BT, Covington MF, Ichihashi Y, Zumstein K, Sinha NR.

Front Plant Sci. 2015 May 22;6:366. doi: 10.3389/fpls.2015.00366. eCollection 2015.


An intracellular transcriptomic atlas of the giant coenocyte Caulerpa taxifolia.

Ranjan A, Townsley BT, Ichihashi Y, Sinha NR, Chitwood DH.

PLoS Genet. 2015 Jan 8;11(1):e1004900. doi: 10.1371/journal.pgen.1004900. eCollection 2015 Jan.


Plant development: small RNAs and the metamorphosis of leaves.

Chitwood DH, Sinha NR.

Curr Biol. 2014 Nov 17;24(22):R1087-9. doi: 10.1016/j.cub.2014.10.013. Epub 2014 Nov 17.


Resolving distinct genetic regulators of tomato leaf shape within a heteroblastic and ontogenetic context.

Chitwood DH, Ranjan A, Kumar R, Ichihashi Y, Zumstein K, Headland LR, Ostria-Gallardo E, Aguilar-Martínez JA, Bush S, Carriedo L, Fulop D, Martinez CC, Peng J, Maloof JN, Sinha NR.

Plant Cell. 2014 Sep;26(9):3616-29. doi: 10.1105/tpc.114.130112. Epub 2014 Sep 30.


Evolutionary developmental transcriptomics reveals a gene network module regulating interspecific diversity in plant leaf shape.

Ichihashi Y, Aguilar-Martínez JA, Farhi M, Chitwood DH, Kumar R, Millon LV, Peng J, Maloof JN, Sinha NR.

Proc Natl Acad Sci U S A. 2014 Jun 24;111(25):E2616-21. doi: 10.1073/pnas.1402835111. Epub 2014 Jun 9.


Truncation of LEAFY COTYLEDON1 protein is required for asexual reproduction in Kalanchoë daigremontiana.

Garcês HM, Koenig D, Townsley BT, Kim M, Sinha NR.

Plant Physiol. 2014 May;165(1):196-206. doi: 10.1104/pp.114.237222. Epub 2014 Mar 24.


From genome to phenome and back in tomato.

Ichihashi Y, Sinha NR.

Curr Opin Plant Biol. 2014 Apr;18:9-15. doi: 10.1016/j.pbi.2013.12.004. Epub 2014 Jan 17. Review.


De novo assembly and characterization of the transcriptome of the parasitic weed dodder identifies genes associated with plant parasitism.

Ranjan A, Ichihashi Y, Farhi M, Zumstein K, Townsley B, David-Schwartz R, Sinha NR.

Plant Physiol. 2014 Nov;166(3):1186-99. doi: 10.1104/pp.113.234864. Epub 2014 Jan 7.


A modern ampelography: a genetic basis for leaf shape and venation patterning in grape.

Chitwood DH, Ranjan A, Martinez CC, Headland LR, Thiem T, Kumar R, Covington MF, Hatcher T, Naylor DT, Zimmerman S, Downs N, Raymundo N, Buckler ES, Maloof JN, Aradhya M, Prins B, Li L, Myles S, Sinha NR.

Plant Physiol. 2014 Jan;164(1):259-72. doi: 10.1104/pp.113.229708. Epub 2013 Nov 27.


A quantitative genetic basis for leaf morphology in a set of precisely defined tomato introgression lines.

Chitwood DH, Kumar R, Headland LR, Ranjan A, Covington MF, Ichihashi Y, Fulop D, Jiménez-Gómez JM, Peng J, Maloof JN, Sinha NR.

Plant Cell. 2013 Jul;25(7):2465-81. doi: 10.1105/tpc.113.112391. Epub 2013 Jul 19.


Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato.

Koenig D, Jiménez-Gómez JM, Kimura S, Fulop D, Chitwood DH, Headland LR, Kumar R, Covington MF, Devisetty UK, Tat AV, Tohge T, Bolger A, Schneeberger K, Ossowski S, Lanz C, Xiong G, Taylor-Teeples M, Brady SM, Pauly M, Weigel D, Usadel B, Fernie AR, Peng J, Sinha NR, Maloof JN.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):E2655-62. doi: 10.1073/pnas.1309606110. Epub 2013 Jun 26.


KNOX1 genes regulate lignin deposition and composition in monocots and dicots.

Townsley BT, Sinha NR, Kang J.

Front Plant Sci. 2013 May 3;4:121. doi: 10.3389/fpls.2013.00121. eCollection 2013.


Dynamic transcriptomic profiles between tomato and a wild relative reflect distinct developmental architectures.

Chitwood DH, Maloof JN, Sinha NR.

Plant Physiol. 2013 Jun;162(2):537-52. doi: 10.1104/pp.112.213546. Epub 2013 Apr 12.


Trifoliate encodes an MYB transcription factor that modulates leaf and shoot architecture in tomato.

Naz AA, Raman S, Martinez CC, Sinha NR, Schmitz G, Theres K.

Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2401-6. doi: 10.1073/pnas.1214300110. Epub 2013 Jan 22.


A census of cells in time: quantitative genetics meets developmental biology.

Chitwood DH, Sinha NR.

Curr Opin Plant Biol. 2013 Feb;16(1):92-9. doi: 10.1016/j.pbi.2012.11.003. Epub 2012 Dec 3. Review.


A High-Throughput Method for Illumina RNA-Seq Library Preparation.

Kumar R, Ichihashi Y, Kimura S, Chitwood DH, Headland LR, Peng J, Maloof JN, Sinha NR.

Front Plant Sci. 2012 Aug 28;3:202. doi: 10.3389/fpls.2012.00202. eCollection 2012.


The tomato genome: implications for plant breeding, genomics and evolution.

Ranjan A, Ichihashi Y, Sinha NR.

Genome Biol. 2012 Aug 30;13(8):167. doi: 10.1186/gb-2012-13-8-167.


Conflict between Intrinsic Leaf Asymmetry and Phyllotaxis in the Resupinate Leaves of Alstroemeria psittacina.

Chitwood DH, Naylor DT, Thammapichai P, Weeger AC, Headland LR, Sinha NR.

Front Plant Sci. 2012 Aug 10;3:182. doi: 10.3389/fpls.2012.00182. eCollection 2012.


Leaf asymmetry as a developmental constraint imposed by auxin-dependent phyllotactic patterning.

Chitwood DH, Headland LR, Ranjan A, Martinez CC, Braybrook SA, Koenig DP, Kuhlemeier C, Smith RS, Sinha NR.

Plant Cell. 2012 Jun;24(6):2318-27. doi: 10.1105/tpc.112.098798. Epub 2012 Jun 21.


A new development: evolving concepts in leaf ontogeny.

Townsley BT, Sinha NR.

Annu Rev Plant Biol. 2012;63:535-62. doi: 10.1146/annurev-arplant-042811-105524. Epub 2012 Feb 9. Review.


Native environment modulates leaf size and response to simulated foliar shade across wild tomato species.

Chitwood DH, Headland LR, Filiault DL, Kumar R, Jiménez-Gómez JM, Schrager AV, Park DS, Peng J, Sinha NR, Maloof JN.

PLoS One. 2012;7(1):e29570. doi: 10.1371/journal.pone.0029570. Epub 2012 Jan 12.


The developmental trajectory of leaflet morphology in wild tomato species.

Chitwood DH, Headland LR, Kumar R, Peng J, Maloof JN, Sinha NR.

Plant Physiol. 2012 Mar;158(3):1230-40. doi: 10.1104/pp.111.192518. Epub 2012 Jan 12.


Plant developmental biology in the post-genomic era.

Sinha NR.

Front Plant Sci. 2011 Apr 27;2:11. doi: 10.3389/fpls.2011.00011. eCollection 2011. No abstract available.


Aneurysmal bone cyst of the ethmoid sinus: A case report.

Sinha NR, Szmigielski W, Khanna M.

Pol J Radiol. 2010 Jul;75(3):65-7.


LYRATE is a key regulator of leaflet initiation and lamina outgrowth in tomato.

David-Schwartz R, Koenig D, Sinha NR.

Plant Cell. 2009 Oct;21(10):3093-104. doi: 10.1105/tpc.109.069948. Epub 2009 Oct 9.


Compound leaf development and evolution in the legumes.

Champagne CE, Goliber TE, Wojciechowski MF, Mei RW, Townsley BT, Wang K, Paz MM, Geeta R, Sinha NR.

Plant Cell. 2007 Nov;19(11):3369-78. Epub 2007 Nov 9.


Evolution of asexual reproduction in leaves of the genus Kalanchoë.

Garcês HM, Champagne CE, Townsley BT, Park S, Malhó R, Pedroso MC, Harada JJ, Sinha NR.

Proc Natl Acad Sci U S A. 2007 Sep 25;104(39):15578-83. Epub 2007 Sep 24.


Homologies in leaf form inferred from KNOXI gene expression during development.

Bharathan G, Goliber TE, Moore C, Kessler S, Pham T, Sinha NR.

Science. 2002 Jun 7;296(5574):1858-60.


The regulation of compound leaf development.

Bharathan G, Sinha NR.

Plant Physiol. 2001 Dec;127(4):1533-8. Review. No abstract available.


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