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Items: 16

1.

Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival.

Smith O, Dunshea G, Sinding MS, Fedorov S, Germonpre M, Bocherens H, Gilbert MTP.

PLoS Biol. 2019 Jul 30;17(7):e3000166. doi: 10.1371/journal.pbio.3000166. eCollection 2019 Jul.

2.

Killer whale genomes reveal a complex history of recurrent admixture and vicariance.

Foote AD, Martin MD, Louis M, Pacheco G, Robertson KM, Sinding MS, Amaral AR, Baird RW, Baker CS, Ballance L, Barlow J, Brownlow A, Collins T, Constantine R, Dabin W, Dalla Rosa L, Davison NJ, Durban JW, Esteban R, Ferguson SH, Gerrodette T, Guinet C, Hanson MB, Hoggard W, Matthews CJD, Samarra FIP, de Stephanis R, Tavares SB, Tixier P, Totterdell JA, Wade P, Excoffier L, Gilbert MTP, Wolf JBW, Morin PA.

Mol Ecol. 2019 Jul;28(14):3427-3444. doi: 10.1111/mec.15099. Epub 2019 May 27.

PMID:
31131963
3.

Complete Inactivation of Sebum-Producing Genes Parallels the Loss of Sebaceous Glands in Cetacea.

Lopes-Marques M, Machado AM, Alves LQ, Fonseca MM, Barbosa S, Sinding MS, Rasmussen MH, Iversen MR, Frost Bertelsen M, Campos PF, da Fonseca R, Ruivo R, Castro LFC.

Mol Biol Evol. 2019 Jun 1;36(6):1270-1280. doi: 10.1093/molbev/msz068.

4.

MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements.

Rey-Iglesia A, Gopalakrishan S, Carøe C, Alquezar-Planas DE, Ahlmann Nielsen A, Röder T, Bruhn Pedersen L, Naesborg-Nielsen C, Sinding MS, Fredensborg Rath M, Li Z, Petersen B, Gilbert MTP, Bunce M, Mourier T, Hansen AJ.

Mol Ecol Resour. 2019 Mar;19(2):512-525. doi: 10.1111/1755-0998.12984. Epub 2019 Feb 6.

PMID:
30575257
5.

Erratum to: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing.

Mak SST, Gopalakrishnan S, Carøe C, Geng C, Liu S, Sinding MS, Kuderna LFK, Zhang W, Fu S, Vieira FG, Germonpré M, Bocherens H, Fedorov S, Petersen B, Sicheritz-Pontén T, Marques-Bonet T, Zhang G, Jiang H, Gilbert MTP.

Gigascience. 2018 Dec 1;7(12). doi: 10.1093/gigascience/giy151. No abstract available.

6.

Population genomics of grey wolves and wolf-like canids in North America.

Sinding MS, Gopalakrishan S, Vieira FG, Samaniego Castruita JA, Raundrup K, Heide Jørgensen MP, Meldgaard M, Petersen B, Sicheritz-Ponten T, Mikkelsen JB, Marquard-Petersen U, Dietz R, Sonne C, Dalén L, Bachmann L, Wiig Ø, Hansen AJ, Gilbert MTP.

PLoS Genet. 2018 Nov 12;14(11):e1007745. doi: 10.1371/journal.pgen.1007745. eCollection 2018 Nov.

7.

Interspecific Gene Flow Shaped the Evolution of the Genus Canis.

Gopalakrishnan S, Sinding MS, Ramos-Madrigal J, Niemann J, Samaniego Castruita JA, Vieira FG, Carøe C, Montero MM, Kuderna L, Serres A, González-Basallote VM, Liu YH, Wang GD, Marques-Bonet T, Mirarab S, Fernandes C, Gaubert P, Koepfli KP, Budd J, Rueness EK, Heide-Jørgensen MP, Petersen B, Sicheritz-Ponten T, Bachmann L, Wiig Ø, Hansen AJ, Gilbert MTP.

Curr Biol. 2018 Nov 5;28(21):3441-3449.e5. doi: 10.1016/j.cub.2018.08.041. Epub 2018 Oct 18.

8.

The evolutionary history of dogs in the Americas.

Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, Eldridge M, Enk J, Gopalakrishnan S, Gori K, Grimes V, Guiry E, Hansen AJ, Hulme-Beaman A, Johnson J, Kitchen A, Kasparov AK, Kwon YM, Nikolskiy PA, Lope CP, Manin A, Martin T, Meyer M, Myers KN, Omura M, Rouillard JM, Pavlova EY, Sciulli P, Sinding MS, Strakova A, Ivanova VV, Widga C, Willerslev E, Pitulko VV, Barnes I, Gilbert MTP, Dobney KM, Malhi RS, Murchison EP, Larson G, Frantz LAF.

Science. 2018 Jul 6;361(6397):81-85. doi: 10.1126/science.aao4776.

PMID:
29976825
9.

Greenland sled dogs at risk of extinction.

Sonne C, Langebæk R, Dietz R, Andersen-Ranberg E, Houser G, Hansen AJ, Sinding MS, Olsen MT, Egevang C, Gilbert MTP, Meldgaard M.

Science. 2018 Jun 8;360(6393):1080. doi: 10.1126/science.aat9578. No abstract available.

PMID:
29880678
10.

Debugging diversity - a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool.

Schnell IB, Bohmann K, Schultze SE, Richter SR, Murray DC, Sinding MS, Bass D, Cadle JE, Campbell MJ, Dolch R, Edwards DP, Gray TNE, Hansen T, Hoa ANQ, Noer CL, Heise-Pavlov S, Sander Pedersen AF, Ramamonjisoa JC, Siddall ME, Tilker A, Traeholt C, Wilkinson N, Woodcock P, Yu DW, Bertelsen MF, Bunce M, Gilbert MTP.

Mol Ecol Resour. 2018 Nov;18(6):1282-1298. doi: 10.1111/1755-0998.12912. Epub 2018 Jul 5.

PMID:
29877042
11.

No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon.

Barnett R, Sinding MS, Vieira FG, Mendoza MLZ, Bonnet M, Araldi A, Kienast I, Zambarda A, Yamaguchi N, Henschel P, Gilbert MTP.

Conserv Genet. 2018;19(3):611-618. doi: 10.1007/s10592-017-1039-2. Epub 2018 Feb 1.

12.

Paradoxical escape responses by narwhals (Monodon monoceros).

Williams TM, Blackwell SB, Richter B, Sinding MS, Heide-Jørgensen MP.

Science. 2017 Dec 8;358(6368):1328-1331. doi: 10.1126/science.aao2740.

PMID:
29217577
13.

Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites.

Liu YH, Wang L, Xu T, Guo X, Li Y, Yin TT, Yang HC, Hu Y, Adeola AC, Sanke OJ, Otecko NO, Wang M, Ma Y, Charles OS, Sinding MS, Gopalakrishnan S, Alfredo Samaniego J, Hansen AJ, Fernandes C, Gaubert P, Budd J, Dawuda PM, Knispel Rueness E, Jiang L, Zhai W, Gilbert MTP, Peng MS, Qi X, Wang GD, Zhang YP.

Mol Biol Evol. 2018 Feb 1;35(2):287-298. doi: 10.1093/molbev/msx258.

PMID:
29040727
14.

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing.

Mak SST, Gopalakrishnan S, Carøe C, Geng C, Liu S, Sinding MS, Kuderna LFK, Zhang W, Fu S, Vieira FG, Germonpré M, Bocherens H, Fedorov S, Petersen B, Sicheritz-Pontén T, Marques-Bonet T, Zhang G, Jiang H, Gilbert MTP.

Gigascience. 2017 Aug 1;6(8):1-13. doi: 10.1093/gigascience/gix049. Erratum in: Gigascience. 2018 Dec 1;7(12):.

15.

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics.

Gopalakrishnan S, Samaniego Castruita JA, Sinding MS, Kuderna LFK, Räikkönen J, Petersen B, Sicheritz-Ponten T, Larson G, Orlando L, Marques-Bonet T, Hansen AJ, Dalén L, Gilbert MTP.

BMC Genomics. 2017 Jun 29;18(1):495. doi: 10.1186/s12864-017-3883-3.

16.

An ‛Aukward' Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks.

Thomas JE, Carvalho GR, Haile J, Martin MD, Castruita JAS, Niemann J, Sinding MS, Sandoval-Velasco M, Rawlence NJ, Fuller E, Fjeldså J, Hofreiter M, Stewart JR, Gilbert MTP, Knapp M.

Genes (Basel). 2017 Jun 15;8(6). pii: E164. doi: 10.3390/genes8060164.

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