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A mosaic monoploid reference sequence for the highly complex genome of sugarcane.

Garsmeur O, Droc G, Antonise R, Grimwood J, Potier B, Aitken K, Jenkins J, Martin G, Charron C, Hervouet C, Costet L, Yahiaoui N, Healey A, Sims D, Cherukuri Y, Sreedasyam A, Kilian A, Chan A, Van Sluys MA, Swaminathan K, Town C, Bergès H, Simmons B, Glaszmann JC, van der Vossen E, Henry R, Schmutz J, D'Hont A.

Nat Commun. 2018 Jul 6;9(1):2638. doi: 10.1038/s41467-018-05051-5.


The light chain IgLV3-21 defines a new poor prognostic subgroup in Chronic Lymphocytic Leukemia: results of a multicenter study.

Stamatopoulos B, Smith T, Crompot E, Pieters K, Clifford R, Mraz M, Robbe P, Burns A, Timbs A, Bruce DR, Hillmen P, Meuleman N, Mineur P, Firescu R, Maerevoet M, De Wilde V, Efira AA, Philippé J, Verhasselt B, Offner F, Sims D, Heger A, Dreau H, Schuh A.

Clin Cancer Res. 2018 Jun 26. pii: clincanres.0133.2018. doi: 10.1158/1078-0432.CCR-18-0133. [Epub ahead of print]


A Case of Rhabdomyolysis Caused by Blood Flow-Restricted Resistance Training.

Krieger J, Sims D, Wolterstorff C.

J Spec Oper Med. 2018 Summer;18(2):16-17.


Postnatal Psychosocial Assessment and Clinical Decision-Making, a Descriptive Study.

Sims D, Fowler C.

J Clin Nurs. 2018 May 18. doi: 10.1111/jocn.14530. [Epub ahead of print]


The Oxygen Consumption and Metabolic Cost of Walking and Running in Adults With Achondroplasia.

Sims DT, Onambélé-Pearson GL, Burden A, Payton C, Morse CI.

Front Physiol. 2018 Apr 18;9:410. doi: 10.3389/fphys.2018.00410. eCollection 2018.


Genomic Response to Vitamin D Supplementation in the Setting of a Randomized, Placebo-Controlled Trial.

Berlanga-Taylor AJ, Plant K, Dahl A, Lau E, Hill M, Sims D, Heger A, Emberson J, Armitage J, Clarke R, Knight JC.

EBioMedicine. 2018 May;31:133-142. doi: 10.1016/j.ebiom.2018.04.010. Epub 2018 Apr 10.


Stem cell modeling of mitochondrial parkinsonism reveals key functions of OPA1.

Jonikas M, Madill M, Mathy A, Zekoll T, Zois CE, Wigfield S, Kurzawa-Akanbi M, Browne C, Sims D, Chinnery PF, Cowley SA, Tofaris GK.

Ann Neurol. 2018 May;83(5):915-925. doi: 10.1002/ana.25221. Epub 2018 Apr 25.


Shortfin mako sharks threatened by inaction.

Sims DW, Mucientes G, Queiroz N.

Science. 2018 Mar 23;359(6382):1342. doi: 10.1126/science.aat0315. No abstract available.


Convergence of marine megafauna movement patterns in coastal and open oceans.

Sequeira AMM, Rodríguez JP, Eguíluz VM, Harcourt R, Hindell M, Sims DW, Duarte CM, Costa DP, Fernández-Gracia J, Ferreira LC, Hays GC, Heupel MR, Meekan MG, Aven A, Bailleul F, Baylis AMM, Berumen ML, Braun CD, Burns J, Caley MJ, Campbell R, Carmichael RH, Clua E, Einoder LD, Friedlaender A, Goebel ME, Goldsworthy SD, Guinet C, Gunn J, Hamer D, Hammerschlag N, Hammill M, Hückstädt LA, Humphries NE, Lea MA, Lowther A, Mackay A, McHuron E, McKenzie J, McLeay L, McMahon CR, Mengersen K, Muelbert MMC, Pagano AM, Page B, Queiroz N, Robinson PW, Shaffer SA, Shivji M, Skomal GB, Thorrold SR, Villegas-Amtmann S, Weise M, Wells R, Wetherbee B, Wiebkin A, Wienecke B, Thums M.

Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3072-3077. doi: 10.1073/pnas.1716137115. Epub 2018 Feb 26.


Parental Self-Efficacy: A Concept Analysis Related to Teen Parenting and Implications for School Nurses.

Sims DC, Skarbek AJ.

J Sch Nurs. 2018 Jan 1:1059840518755871. doi: 10.1177/1059840518755871. [Epub ahead of print]


De novo mutations in GRIN1 cause extensive bilateral polymicrogyria.

Fry AE, Fawcett KA, Zelnik N, Yuan H, Thompson BAN, Shemer-Meiri L, Cushion TD, Mugalaasi H, Sims D, Stoodley N, Chung SK, Rees MI, Patel CV, Brueton LA, Layet V, Giuliano F, Kerr MP, Banne E, Meiner V, Lerman-Sagie T, Helbig KL, Kofman LH, Knight KM, Chen W, Kannan V, Hu C, Kusumoto H, Zhang J, Swanger SA, Shaulsky GH, Mirzaa GM, Muir AM, Mefford HC, Dobyns WB, Mackenzie AB, Mullins JGL, Lemke JR, Bahi-Buisson N, Traynelis SF, Iago HF, Pilz DT.

Brain. 2018 Jan 22. doi: 10.1093/brain/awx358. [Epub ahead of print]


Reply: Transient Wall Motion Abnormalities in Donor Hearts With Improved Left Ventricular Systolic Dysfunction: Takotsubo Revisited?

Madan S, Sims D, Saeed O, Patel SR, Jorde UP.

J Am Coll Cardiol. 2018 Jan 23;71(3):368-369. doi: 10.1016/j.jacc.2017.10.094. No abstract available.


Development, Implementation, and Evaluation of Active Lions: A Campaign to Promote Active Travel to a University Campus.

Bopp M, Sims D, Matthews SA, Rovniak LS, Poole E, Colgan J.

Am J Health Promot. 2018 Mar;32(3):536-545. doi: 10.1177/0890117117694287. Epub 2017 Feb 19.


When has service provision for transient ischaemic attack improved enough? A discrete event simulation economic modelling study.

Barton P, Sheppard JP, Penaloza-Ramos CM, Jowett S, Ford GA, Lasserson D, Mant J, Mellor RM, Quinn T, Rothwell PM, Sandler D, Sims D, McManus RJ; BBC CLAHRC investigators.

BMJ Open. 2017 Nov 25;7(11):e018189. doi: 10.1136/bmjopen-2017-018189.


Examining Capacity and Functioning of Bicycle Coalitions: A Descriptive Study.

Bopp M, Sims D, Vairo N, Hentz-Leister E.

Front Public Health. 2017 Nov 8;5:296. doi: 10.3389/fpubh.2017.00296. eCollection 2017.


The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization.

McCormick RF, Truong SK, Sreedasyam A, Jenkins J, Shu S, Sims D, Kennedy M, Amirebrahimi M, Weers BD, McKinley B, Mattison A, Morishige DT, Grimwood J, Schmutz J, Mullet JE.

Plant J. 2018 Jan;93(2):338-354. doi: 10.1111/tpj.13781. Epub 2017 Dec 28.


Specific force of the vastus lateralis in adults with achondroplasia.

Sims DT, Onambélé-Pearson GL, Burden A, Payton C, Morse CI.

J Appl Physiol (1985). 2018 Mar 1;124(3):696-703. doi: 10.1152/japplphysiol.00638.2017. Epub 2017 Nov 16.


Dominant Mutations in GRM1 Cause Spinocerebellar Ataxia Type 44.

Watson LM, Bamber E, Schnekenberg RP, Williams J, Bettencourt C, Lickiss J, Jayawant S, Fawcett K, Clokie S, Wallis Y, Clouston P, Sims D, Houlden H, Becker EBE, Németh AH.

Am J Hum Genet. 2017 Nov 2;101(5):866. doi: 10.1016/j.ajhg.2017.10.008. No abstract available.


Sildenafil Is Associated With Reduced Device Thrombosis and Ischemic Stroke Despite Low-Level Hemolysis on Heart Mate II Support.

Saeed O, Rangasamy S, Selevany I, Madan S, Fertel J, Eisenberg R, Aljoudi M, Patel SR, Shin J, Sims DB, Reyes Gil M, Goldstein DJ, Slepian MJ, Billett HH, Jorde UP.

Circ Heart Fail. 2017 Nov;10(11). pii: e004222. doi: 10.1161/CIRCHEARTFAILURE.117.004222.


Dominant Mutations in GRM1 Cause Spinocerebellar Ataxia Type 44.

Watson LM, Bamber E, Schnekenberg RP, Williams J, Bettencourt C, Jayawant S, Lickiss J, Fawcett K, Clokie S, Wallis Y, Clouston P, Sims D, Houlden H, Becker EBE, Németh AH.

Am J Hum Genet. 2017 Oct 5;101(4):638. doi: 10.1016/j.ajhg.2017.09.006. No abstract available.


Dominant Mutations in GRM1 Cause Spinocerebellar Ataxia Type 44.

Watson LM, Bamber E, Schnekenberg RP, Williams J, Bettencourt C, Lickiss J, Jayawant S, Fawcett K, Clokie S, Wallis Y, Clouston P, Sims D, Houlden H, Becker EBE, Németh AH.

Am J Hum Genet. 2017 Sep 7;101(3):451-458. doi: 10.1016/j.ajhg.2017.08.005. Erratum in: Am J Hum Genet. 2017 Oct 5;101(4):638. Am J Hum Genet. 2017 Nov 2;101(5):866.


Outcomes After Transplantation of Donor Hearts With Improving Left Ventricular Systolic Dysfunction.

Madan S, Saeed O, Vlismas P, Katsa I, Patel SR, Shin JJ, Jakobleff WA, Goldstein DJ, Sims DB, Jorde UP.

J Am Coll Cardiol. 2017 Sep 5;70(10):1248-1258. doi: 10.1016/j.jacc.2017.07.728.


Outcomes of Early Adolescent Donor Hearts in Adult Transplant Recipients.

Madan S, Patel SR, Vlismas P, Saeed O, Murthy S, Forest S, Jakobleff W, Sims D, Lamour JM, Hsu DT, Shin J, Goldstein D, Jorde UP.

JACC Heart Fail. 2017 Dec;5(12):879-887. doi: 10.1016/j.jchf.2017.05.004. Epub 2017 Aug 16.


Multipotent Basal Stem Cells, Maintained in Localized Proximal Niches, Support Directed Long-Ranging Epithelial Flows in Human Prostates.

Moad M, Hannezo E, Buczacki SJ, Wilson L, El-Sherif A, Sims D, Pickard R, Wright NA, Williamson SC, Turnbull DM, Taylor RW, Greaves L, Robson CN, Simons BD, Heer R.

Cell Rep. 2017 Aug 15;20(7):1609-1622. doi: 10.1016/j.celrep.2017.07.061.


Cessation of Continuous Flow Left Ventricular Assist Device-Related Gastrointestinal Bleeding After Heart Transplantation.

Patel SR, Oh KT, Ogriki T, Sims D, Shin JJ, Madan S, Saeed O, Goldstein DJ, Jorde UP.

ASAIO J. 2018 Mar/Apr;64(2):191-195. doi: 10.1097/MAT.0000000000000624.


Measurement of the IgG2 response to Pneumococcal capsular polysaccharides may identify an antibody deficiency in individuals referred for immunological investigation.

Parker A, Irure Ventura J, Sims D, Echeverría de Carlos A, Gómez de la Torre R, Tricas Aizpún L, Ocejo-Vinyals JG, López-Hoyos M, Wallis G, Harding S.

J Immunoassay Immunochem. 2017;38(5):514-522. doi: 10.1080/15321819.2017.1340897. Epub 2017 Jun 14.


The Relationship of Living Environment with Behavioral and Fitness Outcomes by Sex: an Exploratory Study in College-aged Students.

Shaffer K, Bopp M, Papalia Z, Sims D, Bopp CM.

Int J Exerc Sci. 2017 May 1;10(3):330-339. eCollection 2017.


Oceanic adults, coastal juveniles: tracking the habitat use of whale sharks off the Pacific coast of Mexico.

Ramírez-Macías D, Queiroz N, Pierce SJ, Humphries NE, Sims DW, Brunnschweiler JM.

PeerJ. 2017 May 4;5:e3271. doi: 10.7717/peerj.3271. eCollection 2017.


Familial childhood-onset progressive cerebellar syndrome associated with the ATP1A3 mutation.

Jaffer F, Fawcett K, Sims D, Heger A, Houlden H, Hanna MG, Kingston H, Sisodiya SM.

Neurol Genet. 2017 Mar 27;3(2):e145. doi: 10.1212/NXG.0000000000000145. eCollection 2017 Apr. No abstract available.


Distinguishing globally-driven changes from regional- and local-scale impacts: The case for long-term and broad-scale studies of recovery from pollution.

Hawkins SJ, Evans AJ, Mieszkowska N, Adams LC, Bray S, Burrows MT, Firth LB, Genner MJ, Leung KMY, Moore PJ, Pack K, Schuster H, Sims DW, Whittington M, Southward EC.

Mar Pollut Bull. 2017 Nov 30;124(2):573-586. doi: 10.1016/j.marpolbul.2017.01.068. Epub 2017 Mar 15.


Association of centre volume and in-hospital mortality in heart failure hospitalisations.

Madan S, Sims D, Saeed O, Patel SR, Shin JJ, Jorde UP.

Postgrad Med J. 2017 Sep;93(1103):534-540. doi: 10.1136/postgradmedj-2016-134697. Epub 2017 Mar 2.


Analytical Validation of the Next-Generation Sequencing Assay for a Nationwide Signal-Finding Clinical Trial: Molecular Analysis for Therapy Choice Clinical Trial.

Lih CJ, Harrington RD, Sims DJ, Harper KN, Bouk CH, Datta V, Yau J, Singh RR, Routbort MJ, Luthra R, Patel KP, Mantha GS, Krishnamurthy S, Ronski K, Walther Z, Finberg KE, Canosa S, Robinson H, Raymond A, Le LP, McShane LM, Polley EC, Conley BA, Doroshow JH, Iafrate AJ, Sklar JL, Hamilton SR, Williams PM.

J Mol Diagn. 2017 Mar;19(2):313-327. doi: 10.1016/j.jmoldx.2016.10.007. Epub 2017 Feb 7.


How Postpartum Women With Depressive Symptoms Manage Sleep Disruption and Fatigue.

Doering JJ, Sims DA, Miller DD.

Res Nurs Health. 2017 Apr;40(2):132-142. doi: 10.1002/nur.21782. Epub 2017 Jan 13.


Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

Anderson IJ, DasSarma P, Lucas S, Copeland A, Lapidus A, Del Rio TG, Tice H, Dalin E, Bruce DC, Goodwin L, Pitluck S, Sims D, Brettin TS, Detter JC, Han CS, Larimer F, Hauser L, Land M, Ivanova N, Richardson P, Cavicchioli R, DasSarma S, Woese CR, Kyrpides NC.

Stand Genomic Sci. 2016 Sep 10;11(1):70. doi: 10.1186/s40793-016-0194-2. eCollection 2016.


Catastrophic Aortic Extravasation in a Patient with Prior Lung Cancer.

Geraci JF, Sims DP.

J Vasc Interv Radiol. 2016 Sep;27(9):1337. doi: 10.1016/j.jvir.2016.05.035. No abstract available.


Tuning the Transcriptional Response to Hypoxia by Inhibiting Hypoxia-inducible Factor (HIF) Prolyl and Asparaginyl Hydroxylases.

Chan MC, Ilott NE, Schödel J, Sims D, Tumber A, Lippl K, Mole DR, Pugh CW, Ratcliffe PJ, Ponting CP, Schofield CJ.

J Biol Chem. 2016 Sep 23;291(39):20661-73. doi: 10.1074/jbc.M116.749291. Epub 2016 Aug 8.


Certified DNA Reference Materials to Compare HER2 Gene Amplification Measurements Using Next-Generation Sequencing Methods.

Lih CJ, Si H, Das B, Harrington RD, Harper KN, Sims DJ, McGregor PM, Camalier CE, Kayserian AY, Williams PM, He HJ, Almeida JL, Lund SP, Choquette S, Cole KD.

J Mol Diagn. 2016 Sep;18(5):753-761. doi: 10.1016/j.jmoldx.2016.05.008. Epub 2016 Jul 25.


Acoustic telemetry and network analysis reveal the space use of multiple reef predators and enhance marine protected area design.

Lea JS, Humphries NE, von Brandis RG, Clarke CR, Sims DW.

Proc Biol Sci. 2016 Jul 13;283(1834). pii: 20160717. doi: 10.1098/rspb.2016.0717.


Rationalizing spatial exploration patterns of wild animals and humans through a temporal discounting framework.

Namboodiri VM, Levy JM, Mihalas S, Sims DW, Hussain Shuler MG.

Proc Natl Acad Sci U S A. 2016 Aug 2;113(31):8747-52. doi: 10.1073/pnas.1601664113. Epub 2016 Jul 6.


DNA barcoding identifies a cosmopolitan diet in the ocean sunfish.

Sousa LL, Xavier R, Costa V, Humphries NE, Trueman C, Rosa R, Sims DW, Queiroz N.

Sci Rep. 2016 Jul 4;6:28762. doi: 10.1038/srep28762.


Donor Troponin and Survival After Cardiac Transplantation: An Analysis of the United Network of Organ Sharing Registry.

Madan S, Saeed O, Shin J, Sims D, Goldstein D, Piña I, Jorde U, Patel SR.

Circ Heart Fail. 2016 Jun;9(6). pii: e002909. doi: 10.1161/CIRCHEARTFAILURE.115.002909.


Watchful Waiting in Continuous-Flow Left Ventricular Assist Device Patients With Ongoing Hemolysis Is Associated With an Increased Risk for Cerebrovascular Accident or Death.

Levin AP, Saeed O, Willey JZ, Levin CJ, Fried JA, Patel SR, Sims DB, Nguyen JD, Shin JJ, Topkara VK, Colombo PC, Goldstein DJ, Naka Y, Takayama H, Uriel N, Jorde UP.

Circ Heart Fail. 2016 May;9(5). pii: e002896. doi: 10.1161/CIRCHEARTFAILURE.115.002896.


Plasmid-Based Materials as Multiplex Quality Controls and Calibrators for Clinical Next-Generation Sequencing Assays.

Sims DJ, Harrington RD, Polley EC, Forbes TD, Mehaffey MG, McGregor PM 3rd, Camalier CE, Harper KN, Bouk CH, Das B, Conley BA, Doroshow JH, Williams PM, Lih CJ.

J Mol Diagn. 2016 May;18(3):336-349. doi: 10.1016/j.jmoldx.2015.11.008.


Urban Park Development and Pediatric Obesity Rates: A Quasi-Experiment Using Electronic Health Record Data.

Goldsby TU, George BJ, Yeager VA, Sen BP, Ferdinand A, Sims DM, Manzella B, Cockrell Skinner A, Allison DB, Menachemi N.

Int J Environ Res Public Health. 2016 Apr 8;13(4):411. doi: 10.3390/ijerph13040411.


Fish stocks: Unlimited by-catch limits recovery.

Sims DW, Queiroz N.

Nature. 2016 Mar 24;531(7595):448. doi: 10.1038/531448a. No abstract available.


Defining the microbial transcriptional response to colitis through integrated host and microbiome profiling.

Ilott NE, Bollrath J, Danne C, Schiering C, Shale M, Adelmann K, Krausgruber T, Heger A, Sims D, Powrie F.

ISME J. 2016 Oct;10(10):2389-404. doi: 10.1038/ismej.2016.40. Epub 2016 Mar 22.


Key Questions in Marine Megafauna Movement Ecology.

Hays GC, Ferreira LC, Sequeira AMM, Meekan MG, Duarte CM, Bailey H, Bailleul F, Bowen WD, Caley MJ, Costa DP, Eguíluz VM, Fossette S, Friedlaender AS, Gales N, Gleiss AC, Gunn J, Harcourt R, Hazen EL, Heithaus MR, Heupel M, Holland K, Horning M, Jonsen I, Kooyman GL, Lowe CG, Madsen PT, Marsh H, Phillips RA, Righton D, Ropert-Coudert Y, Sato K, Shaffer SA, Simpfendorfer CA, Sims DW, Skomal G, Takahashi A, Trathan PN, Wikelski M, Womble JN, Thums M.

Trends Ecol Evol. 2016 Jun;31(6):463-475. doi: 10.1016/j.tree.2016.02.015. Epub 2016 Mar 12.


Prevalence and predictors of hospital prealerting in acute stroke: a mixed methods study.

Sheppard JP, Lindenmeyer A, Mellor RM, Greenfield S, Mant J, Quinn T, Rosser A, Sandler D, Sims D, Ward M, McManus RJ; CLAHRC BBC investigators.

Emerg Med J. 2016 Jul;33(7):482-8. doi: 10.1136/emermed-2014-204392. Epub 2016 Feb 23.


The T-box transcription factor 3 is a promising biomarker and a key regulator of the oncogenic phenotype of a diverse range of sarcoma subtypes.

Willmer T, Cooper A, Sims D, Govender D, Prince S.

Oncogenesis. 2016 Feb 22;5:e199. doi: 10.1038/oncsis.2016.11.


Frailty Assessment in Advanced Heart Failure.

Madan SA, Fida N, Barman P, Sims D, Shin J, Verghese J, Piña I, Jorde U, Patel SR.

J Card Fail. 2016 Oct;22(10):840-4. doi: 10.1016/j.cardfail.2016.02.003. Epub 2016 Feb 13.


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