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Items: 1 to 50 of 91

1.

Marine restoration projects are undervalued.

Gordon TAC, Radford AN, Simpson SD, Meekan MG.

Science. 2020 Feb 7;367(6478):635-636. doi: 10.1126/science.aba9141. No abstract available.

PMID:
32029619
2.

A TetR-Family Protein (CAETHG_0459) Activates Transcription From a New Promoter Motif Associated With Essential Genes for Autotrophic Growth in Acetogens.

de Souza Pinto Lemgruber R, Valgepea K, Gonzalez Garcia RA, de Bakker C, Palfreyman RW, Tappel R, Köpke M, Simpson SD, Nielsen LK, Marcellin E.

Front Microbiol. 2019 Nov 15;10:2549. doi: 10.3389/fmicb.2019.02549. eCollection 2019.

3.

Acoustic enrichment can enhance fish community development on degraded coral reef habitat.

Gordon TAC, Radford AN, Davidson IK, Barnes K, McCloskey K, Nedelec SL, Meekan MG, McCormick MI, Simpson SD.

Nat Commun. 2019 Nov 29;10(1):5414. doi: 10.1038/s41467-019-13186-2.

4.

Causes and consequences of intraspecific variation in animal responses to anthropogenic noise.

Harding HR, Gordon TAC, Eastcott E, Simpson SD, Radford AN.

Behav Ecol. 2019 Nov-Dec;30(6):1501-1511. doi: 10.1093/beheco/arz114. Epub 2019 Jul 1. Review.

5.

Rising CO2 enhances hypoxia tolerance in a marine fish.

Montgomery DW, Simpson SD, Engelhard GH, Birchenough SNR, Wilson RW.

Sci Rep. 2019 Oct 22;9(1):15152. doi: 10.1038/s41598-019-51572-4.

6.

Grieving environmental scientists need support.

Gordon TAC, Radford AN, Simpson SD.

Science. 2019 Oct 11;366(6462):193. doi: 10.1126/science.aaz2422. No abstract available.

PMID:
31601761
7.

The carbonic anhydrase of Clostridium autoethanogenum represents a new subclass of β-carbonic anhydrases.

Pander B, Harris G, Scott DJ, Winzer K, Köpke M, Simpson SD, Minton NP, Henstra AM.

Appl Microbiol Biotechnol. 2019 Sep;103(17):7275-7286. doi: 10.1007/s00253-019-10015-w. Epub 2019 Jul 25.

8.

A novel conjugal donor strain for improved DNA transfer into Clostridium spp.

Woods C, Humphreys CM, Rodrigues RM, Ingle P, Rowe P, Henstra AM, Köpke M, Simpson SD, Winzer K, Minton NP.

Anaerobe. 2019 Oct;59:184-191. doi: 10.1016/j.anaerobe.2019.06.020. Epub 2019 Jun 30.

9.

A novel CRISPR/Cas9 associated technology for sequence-specific nucleic acid enrichment.

Stevens RC, Steele JL, Glover WR, Sanchez-Garcia JF, Simpson SD, O'Rourke D, Ramsdell JS, MacManes MD, Thomas WK, Shuber AP.

PLoS One. 2019 Apr 18;14(4):e0215441. doi: 10.1371/journal.pone.0215441. eCollection 2019.

10.

Engineering of vitamin prototrophy in Clostridium ljungdahlii and Clostridium autoethanogenum.

Annan FJ, Al-Sinawi B, Humphreys CM, Norman R, Winzer K, Köpke M, Simpson SD, Minton NP, Henstra AM.

Appl Microbiol Biotechnol. 2019 Jun;103(11):4633-4648. doi: 10.1007/s00253-019-09763-6. Epub 2019 Apr 10.

11.

Quantitative analysis of tetrahydrofolate metabolites from clostridium autoethanogenum.

de Souza Pinto Lemgruber R, Valgepea K, Hodson MP, Tappel R, Simpson SD, Köpke M, Nielsen LK, Marcellin E.

Metabolomics. 2018 Feb 16;14(3):35. doi: 10.1007/s11306-018-1331-2.

PMID:
30830344
12.

Systems-level engineering and characterisation of Clostridium autoethanogenum through heterologous production of poly-3-hydroxybutyrate (PHB).

de Souza Pinto Lemgruber R, Valgepea K, Tappel R, Behrendorff JB, Palfreyman RW, Plan M, Hodson MP, Simpson SD, Nielsen LK, Köpke M, Marcellin E.

Metab Eng. 2019 May;53:14-23. doi: 10.1016/j.ymben.2019.01.003. Epub 2019 Jan 11.

PMID:
30641139
13.

Fish in habitats with higher motorboat disturbance show reduced sensitivity to motorboat noise.

Harding HR, Gordon TAC, Hsuan RE, Mackaness ACE, Radford AN, Simpson SD.

Biol Lett. 2018 Oct 3;14(10). pii: 20180441. doi: 10.1098/rsbl.2018.0441.

14.

Habitat degradation negatively affects auditory settlement behavior of coral reef fishes.

Gordon TAC, Harding HR, Wong KE, Merchant ND, Meekan MG, McCormick MI, Radford AN, Simpson SD.

Proc Natl Acad Sci U S A. 2018 May 15;115(20):5193-5198. doi: 10.1073/pnas.1719291115. Epub 2018 Apr 30.

15.

Cross-site comparison of ribosomal depletion kits for Illumina RNAseq library construction.

Herbert ZT, Kershner JP, Butty VL, Thimmapuram J, Choudhari S, Alekseyev YO, Fan J, Podnar JW, Wilcox E, Gipson J, Gillaspy A, Jepsen K, BonDurant SS, Morris K, Berkeley M, LeClerc A, Simpson SD, Sommerville G, Grimmett L, Adams M, Levine SS.

BMC Genomics. 2018 Mar 15;19(1):199. doi: 10.1186/s12864-018-4585-1.

16.

Shipbuilding Docks as Experimental Systems for Realistic Assessments of Anthropogenic Stressors on Marine Organisms.

Bruintjes R, Harding HR, Bunce T, Birch F, Lister J, Spiga I, Benson T, Rossington K, Jones D, Tyler CR, Radford AN, Simpson SD.

Bioscience. 2017 Sep 1;67(9):853-859. doi: 10.1093/biosci/bix092. Epub 2017 Sep 6.

17.

Impact of motorboats on fish embryos depends on engine type.

Jain-Schlaepfer S, Fakan E, Rummer JL, Simpson SD, McCormick MI.

Conserv Physiol. 2018 Mar 13;6(1):coy014. doi: 10.1093/conphys/coy014. eCollection 2018.

18.

Effect of elevated CO2 and small boat noise on the kinematics of predator-prey interactions.

McCormick MI, Watson SA, Simpson SD, Allan BJM.

Proc Biol Sci. 2018 Mar 28;285(1875). pii: 20172650. doi: 10.1098/rspb.2017.2650.

19.

Understanding fish populations.

Simpson SD, Barber I, Winfield IJ.

J Fish Biol. 2018 Mar;92(3):563-568. doi: 10.1111/jfb.13574. No abstract available.

PMID:
29537087
20.

Fishes in a changing world: learning from the past to promote sustainability of fish populations.

Gordon TAC, Harding HR, Clever FK, Davidson IK, Davison W, Montgomery DW, Weatherhead RC, Windsor FM, Armstrong JD, Bardonnet A, Bergman E, Britton JR, Côté IM, D'agostino D, Greenberg LA, Harborne AR, Kahilainen KK, Metcalfe NB, Mills SC, Milner NJ, Mittermayer FH, Montorio L, Nedelec SL, Prokkola JM, Rutterford LA, Salvanes AGV, Simpson SD, Vainikka A, Pinnegar JK, Santos EM.

J Fish Biol. 2018 Mar;92(3):804-827. doi: 10.1111/jfb.13546.

PMID:
29537086
21.

H2 drives metabolic rearrangements in gas-fermenting Clostridium autoethanogenum.

Valgepea K, de Souza Pinto Lemgruber R, Abdalla T, Binos S, Takemori N, Takemori A, Tanaka Y, Tappel R, Köpke M, Simpson SD, Nielsen LK, Marcellin E.

Biotechnol Biofuels. 2018 Mar 1;11:55. doi: 10.1186/s13068-018-1052-9. eCollection 2018.

22.

Boat noise impacts risk assessment in a coral reef fish but effects depend on engine type.

McCormick MI, Allan BJM, Harding H, Simpson SD.

Sci Rep. 2018 Mar 1;8(1):3847. doi: 10.1038/s41598-018-22104-3.

23.

School is out on noisy reefs: the effect of boat noise on predator learning and survival of juvenile coral reef fishes.

Ferrari MCO, McCormick MI, Meekan MG, Simpson SD, Nedelec SL, Chivers DP.

Proc Biol Sci. 2018 Jan 31;285(1871). pii: 20180033. doi: 10.1098/rspb.2018.0033.

24.

Interactive effects of music tempi and intensities on grip strength and subjective affect.

Karageorghis CI, Cheek P, Simpson SD, Bigliassi M.

Scand J Med Sci Sports. 2018 Mar;28(3):1166-1175. doi: 10.1111/sms.12979. Epub 2017 Dec 26.

PMID:
28921722
25.

Motorboat noise disrupts co-operative interspecific interactions.

Nedelec SL, Mills SC, Radford AN, Beldade R, Simpson SD, Nedelec B, Côté IM.

Sci Rep. 2017 Aug 1;7(1):6987. doi: 10.1038/s41598-017-06515-2.

26.

Syngas Biorefinery and Syngas Utilization.

De Tissera S, Köpke M, Simpson SD, Humphreys C, Minton NP, Dürre P.

Adv Biochem Eng Biotechnol. 2019;166:247-280. doi: 10.1007/10_2017_5. Review.

PMID:
28631029
27.

Motorboat noise impacts parental behaviour and offspring survival in a reef fish.

Nedelec SL, Radford AN, Pearl L, Nedelec B, McCormick MI, Meekan MG, Simpson SD.

Proc Biol Sci. 2017 Jun 14;284(1856). pii: 20170143. doi: 10.1098/rspb.2017.0143.

28.

Maintenance of ATP Homeostasis Triggers Metabolic Shifts in Gas-Fermenting Acetogens.

Valgepea K, de Souza Pinto Lemgruber R, Meaghan K, Palfreyman RW, Abdalla T, Heijstra BD, Behrendorff JB, Tappel R, Köpke M, Simpson SD, Nielsen LK, Marcellin E.

Cell Syst. 2017 May 24;4(5):505-515.e5. doi: 10.1016/j.cels.2017.04.008. Epub 2017 May 17.

29.

The Draft Genome and Transcriptome of the Atlantic Horseshoe Crab, Limulus polyphemus.

Simpson SD, Ramsdell JS, Watson Iii WH, Chabot CC.

Int J Genomics. 2017;2017:7636513. doi: 10.1155/2017/7636513. Epub 2017 Feb 6.

30.

Painted Goby Larvae under High-CO2 Fail to Recognize Reef Sounds.

Castro JM, Amorim MC, Oliveira AP, Gonçalves EJ, Munday PL, Simpson SD, Faria AM.

PLoS One. 2017 Jan 26;12(1):e0170838. doi: 10.1371/journal.pone.0170838. eCollection 2017.

31.

Metabolic engineering of Clostridium autoethanogenum for selective alcohol production.

Liew F, Henstra AM, Kӧpke M, Winzer K, Simpson SD, Minton NP.

Metab Eng. 2017 Mar;40:104-114. doi: 10.1016/j.ymben.2017.01.007. Epub 2017 Jan 19.

32.

Genome editing of Clostridium autoethanogenum using CRISPR/Cas9.

Nagaraju S, Davies NK, Walker DJ, Köpke M, Simpson SD.

Biotechnol Biofuels. 2016 Oct 18;9:219. eCollection 2016.

33.

Patterns of species range evolution in Indo-Pacific reef assemblages reveal the Coral Triangle as a net source of transoceanic diversity.

Evans SM, McKenna C, Simpson SD, Tournois J, Genner MJ.

Biol Lett. 2016 Jun;12(6). pii: 20160090. doi: 10.1098/rsbl.2016.0090.

34.

Repeated exposure to noise increases tolerance in a coral reef fish.

Nedelec SL, Mills SC, Lecchini D, Nedelec B, Simpson SD, Radford AN.

Environ Pollut. 2016 Sep;216:428-436. doi: 10.1016/j.envpol.2016.05.058. Epub 2016 Jun 17.

35.

Repeated exposure reduces the response to impulsive noise in European seabass.

Radford AN, Lèbre L, Lecaillon G, Nedelec SL, Simpson SD.

Glob Chang Biol. 2016 Oct;22(10):3349-60. doi: 10.1111/gcb.13352. Epub 2016 Jun 10.

36.

Insights into CO2 Fixation Pathway of Clostridium autoethanogenum by Targeted Mutagenesis.

Liew F, Henstra AM, Winzer K, Köpke M, Simpson SD, Minton NP.

mBio. 2016 May 24;7(3). pii: e00427-16. doi: 10.1128/mBio.00427-16.

37.

Low-Carbon Fuel and Chemical Production by Anaerobic Gas Fermentation.

Daniell J, Nagaraju S, Burton F, Köpke M, Simpson SD.

Adv Biochem Eng Biotechnol. 2016;156:293-321. Review.

PMID:
26957126
38.

Rapid recovery following short-term acoustic disturbance in two fish species.

Bruintjes R, Purser J, Everley KA, Mangan S, Simpson SD, Radford AN.

R Soc Open Sci. 2016 Jan 27;3(1):150686. doi: 10.1098/rsos.150686. eCollection 2016 Jan.

39.

Anthropogenic noise increases fish mortality by predation.

Simpson SD, Radford AN, Nedelec SL, Ferrari MC, Chivers DP, McCormick MI, Meekan MG.

Nat Commun. 2016 Feb 5;7:10544. doi: 10.1038/ncomms10544.

40.

Condition-dependent physiological and behavioural responses to anthropogenic noise.

Purser J, Bruintjes R, Simpson SD, Radford AN.

Physiol Behav. 2016 Mar 1;155:157-61. doi: 10.1016/j.physbeh.2015.12.010. Epub 2015 Dec 11.

PMID:
26686756
41.

Ocean acidification boosts larval fish development but reduces the window of opportunity for successful settlement.

Rossi T, Nagelkerken I, Simpson SD, Pistevos JC, Watson SA, Merillet L, Fraser P, Munday PL, Connell SD.

Proc Biol Sci. 2015 Dec 22;282(1821):20151954. doi: 10.1098/rspb.2015.1954.

42.

Effects of Previous Acoustic Experience on Behavioral Responses to Experimental Sound Stimuli and Implications for Research.

Voellmy IK, Purser J, Simpson SD, Radford AN.

Adv Exp Med Biol. 2016;875:1191-6. doi: 10.1007/978-1-4939-2981-8_149.

PMID:
26611086
43.

Small-Boat Noise Impacts Natural Settlement Behavior of Coral Reef Fish Larvae.

Simpson SD, Radford AN, Holles S, Ferarri MC, Chivers DP, McCormick MI, Meekan MG.

Adv Exp Med Biol. 2016;875:1041-8. doi: 10.1007/978-1-4939-2981-8_129.

PMID:
26611066
44.

Beyond a Simple Effect: Variable and Changing Responses to Anthropogenic Noise.

Radford AN, Purser J, Bruintjes R, Voellmy IK, Everley KA, Wale MA, Holles S, Simpson SD.

Adv Exp Med Biol. 2016;875:901-7. doi: 10.1007/978-1-4939-2981-8_111.

PMID:
26611048
45.

The Good, The Bad, and The Distant: Soundscape Cues for Larval Fish.

Piercy JJ, Smith DJ, Codling EA, Hill AJ, Simpson SD.

Adv Exp Med Biol. 2016;875:829-37. doi: 10.1007/978-1-4939-2981-8_102.

PMID:
26611039
46.

Playback Experiments for Noise Exposure.

Holles S, Simpson SD, Lecchini D, Radford AN.

Adv Exp Med Biol. 2016;875:461-6. doi: 10.1007/978-1-4939-2981-8_55.

PMID:
26610992
47.

Pile-Driving Noise Impairs Antipredator Behavior of the European Sea Bass Dicentrarchus labrax.

Everley KA, Radford AN, Simpson SD.

Adv Exp Med Biol. 2016;875:273-9. doi: 10.1007/978-1-4939-2981-8_32.

PMID:
26610969
48.

Impacts of regular and random noise on the behaviour, growth and development of larval Atlantic cod (Gadus morhua).

Nedelec SL, Simpson SD, Morley EL, Nedelec B, Radford AN.

Proc Biol Sci. 2015 Oct 22;282(1817):20151943. doi: 10.1098/rspb.2015.1943.

49.

Historical Arctic Logbooks Provide Insights into Past Diets and Climatic Responses of Cod.

Townhill BL, Maxwell D, Engelhard GH, Simpson SD, Pinnegar JK.

PLoS One. 2015 Sep 2;10(9):e0135418. doi: 10.1371/journal.pone.0135418. eCollection 2015.

50.

The influence of various reef sounds on coral-fish larvae behaviour.

Parmentier E, Berten L, Rigo P, Aubrun F, Nedelec SL, Simpson SD, Lecchini D.

J Fish Biol. 2015 May;86(5):1507-18. doi: 10.1111/jfb.12651. Epub 2015 Mar 18.

PMID:
25786340

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