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Items: 1 to 50 of 69

1.

Enhancement of Glen Moy x Latham raspberry linkage map using GbS to further understand control of developmental processes leading to fruit ripening.

Hackett CA, Milne L, Smith K, Hedley P, Morris J, Simpson CG, Preedy K, Graham J.

BMC Genet. 2018 Aug 15;19(1):59. doi: 10.1186/s12863-018-0666-z.

2.

How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY).

James AB, Calixto CPG, Tzioutziou NA, Guo W, Zhang R, Simpson CG, Jiang W, Nimmo GA, Brown JWS, Nimmo HG.

Plant Cell Environ. 2018 Jul;41(7):1539-1550. doi: 10.1111/pce.13193. Epub 2018 May 2.

3.

BALB/c Mice Can Learn Touchscreen Visual Discrimination and Reversal Tasks Faster than C57BL/6 Mice.

Turner KM, Simpson CG, Burne TH.

Front Behav Neurosci. 2017 Jan 31;11:16. doi: 10.3389/fnbeh.2017.00016. eCollection 2017.

4.

Alternative Splicing of Barley Clock Genes in Response to Low Temperature.

Calixto CP, Simpson CG, Waugh R, Brown JW.

PLoS One. 2016 Dec 13;11(12):e0168028. doi: 10.1371/journal.pone.0168028. eCollection 2016.

5.

Mapping and expression of genes associated with raspberry fruit ripening and softening.

Simpson CG, Cullen DW, Hackett CA, Smith K, Hallett PD, McNicol J, Woodhead M, Graham J.

Theor Appl Genet. 2017 Mar;130(3):557-572. doi: 10.1007/s00122-016-2835-7. Epub 2016 Dec 9.

PMID:
27942774
6.

The Arabidopsis SR45 Splicing Factor, a Negative Regulator of Sugar Signaling, Modulates SNF1-Related Protein Kinase 1 Stability.

Carvalho RF, Szakonyi D, Simpson CG, Barbosa IC, Brown JW, Baena-González E, Duque P.

Plant Cell. 2016 Aug;28(8):1910-25. doi: 10.1105/tpc.16.00301. Epub 2016 Jul 19.

7.

Monitoring Alternative Splicing Changes in Arabidopsis Circadian Clock Genes.

Simpson CG, Fuller J, Calixto CP, McNicol J, Booth C, Brown JW, Staiger D.

Methods Mol Biol. 2016;1398:119-32. doi: 10.1007/978-1-4939-3356-3_11.

PMID:
26867620
8.

Lost in Translation: Pitfalls in Deciphering Plant Alternative Splicing Transcripts.

Brown JW, Simpson CG, Marquez Y, Gadd GM, Barta A, Kalyna M.

Plant Cell. 2015 Aug;27(8):2083-7. doi: 10.1105/tpc.15.00572. Epub 2015 Aug 18.

9.

The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms.

Schlaen RG, Mancini E, Sanchez SE, Perez-Santángelo S, Rugnone ML, Simpson CG, Brown JW, Zhang X, Chernomoretz A, Yanovsky MJ.

Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):9382-7. doi: 10.1073/pnas.1504541112. Epub 2015 Jul 13.

10.

AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.

Zhang R, Calixto CP, Tzioutziou NA, James AB, Simpson CG, Guo W, Marquez Y, Kalyna M, Patro R, Eyras E, Barta A, Nimmo HG, Brown JW.

New Phytol. 2015 Oct;208(1):96-101. doi: 10.1111/nph.13545. Epub 2015 Jun 25.

11.

Long noncoding RNA modulates alternative splicing regulators in Arabidopsis.

Bardou F, Ariel F, Simpson CG, Romero-Barrios N, Laporte P, Balzergue S, Brown JW, Crespi M.

Dev Cell. 2014 Jul 28;30(2):166-76. doi: 10.1016/j.devcel.2014.06.017.

12.

Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially.

Simpson CG, Lewandowska D, Liney M, Davidson D, Chapman S, Fuller J, McNicol J, Shaw P, Brown JW.

New Phytol. 2014 Jul;203(2):424-36. doi: 10.1111/nph.12821. Epub 2014 Apr 22.

13.

The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana.

Raczynska KD, Stepien A, Kierzkowski D, Kalak M, Bajczyk M, McNicol J, Simpson CG, Szweykowska-Kulinska Z, Brown JW, Jarmolowski A.

Nucleic Acids Res. 2014 Jan;42(2):1224-44. doi: 10.1093/nar/gkt894. Epub 2013 Oct 16.

14.

Physiological, biochemical and molecular responses of the potato (Solanum tuberosum L.) plant to moderately elevated temperature.

Hancock RD, Morris WL, Ducreux LJ, Morris JA, Usman M, Verrall SR, Fuller J, Simpson CG, Zhang R, Hedley PE, Taylor MA.

Plant Cell Environ. 2014 Feb;37(2):439-50. doi: 10.1111/pce.12168. Epub 2013 Aug 27.

15.

Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana.

Streitner C, Simpson CG, Shaw P, Danisman S, Brown JW, Staiger D.

Plant Signal Behav. 2013 Jul;8(7):e24638. doi: 10.4161/psb.24638. Epub 2013 May 10.

16.

Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects.

Jones MA, Williams BA, McNicol J, Simpson CG, Brown JW, Harmer SL.

Plant Cell. 2012 Oct;24(10):4066-82. doi: 10.1105/tpc.112.104828. Epub 2012 Oct 30.

17.

An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana.

Streitner C, Köster T, Simpson CG, Shaw P, Danisman S, Brown JW, Staiger D.

Nucleic Acids Res. 2012 Dec;40(22):11240-55. doi: 10.1093/nar/gks873. Epub 2012 Oct 4.

18.

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.

Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol J, Dinh HQ, Barta A, Brown JW.

Nucleic Acids Res. 2012 Mar;40(6):2454-69. doi: 10.1093/nar/gkr932. Epub 2011 Nov 29.

19.

A methyl transferase links the circadian clock to the regulation of alternative splicing.

Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG, Brown JW, Cerdán PD, Borevitz JO, Mas P, Ceriani MF, Kornblihtt AR, Yanovsky MJ.

Nature. 2010 Nov 4;468(7320):112-6. doi: 10.1038/nature09470. Epub 2010 Oct 20.

PMID:
20962777
20.

Regulation of plant gene expression by alternative splicing.

Simpson CG, Manthri S, Raczynska KD, Kalyna M, Lewandowska D, Kusenda B, Maronova M, Szweykowska-Kulinska Z, Jarmolowski A, Barta A, Brown JW.

Biochem Soc Trans. 2010 Apr;38(2):667-71. doi: 10.1042/BST0380667. Review.

PMID:
20298240
21.

Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.

Raczynska KD, Simpson CG, Ciesiolka A, Szewc L, Lewandowska D, McNicol J, Szweykowska-Kulinska Z, Brown JW, Jarmolowski A.

Nucleic Acids Res. 2010 Jan;38(1):265-78. doi: 10.1093/nar/gkp869. Epub 2009 Oct 28.

22.

Aberrant mRNA transcripts and the nonsense-mediated decay proteins UPF2 and UPF3 are enriched in the Arabidopsis nucleolus.

Kim SH, Koroleva OA, Lewandowska D, Pendle AF, Clark GP, Simpson CG, Shaw PJ, Brown JW.

Plant Cell. 2009 Jul;21(7):2045-57. doi: 10.1105/tpc.109.067736. Epub 2009 Jul 14.

23.

Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia.

Koroleva OA, Calder G, Pendle AF, Kim SH, Lewandowska D, Simpson CG, Jones IM, Brown JW, Shaw PJ.

Plant Cell. 2009 May;21(5):1592-606. doi: 10.1105/tpc.108.060434. Epub 2009 May 12.

24.

U12-dependent intron splicing in plants.

Simpson CG, Brown JW.

Curr Top Microbiol Immunol. 2008;326:61-82. Review.

PMID:
18630747
25.

Alternative splicing in plants.

Simpson CG, Lewandowska D, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol J, Raczynska D, Jarmolowski A, Barta A, Brown JW.

Biochem Soc Trans. 2008 Jun;36(Pt 3):508-10. doi: 10.1042/BST0360508. Review.

PMID:
18481991
26.

Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts.

Simpson CG, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol J, Barta A, Brown JW.

Plant J. 2008 Mar;53(6):1035-48. Epub 2007 Dec 15.

27.

Determinants of plant U12-dependent intron splicing efficiency.

Lewandowska D, Simpson CG, Clark GP, Jennings NS, Barciszewska-Pacak M, Lin CF, Makalowski W, Brown JW, Jarmolowski A.

Plant Cell. 2004 May;16(5):1340-52. Epub 2004 Apr 20.

28.

SPLICE SITE SELECTION IN PLANT PRE-mRNA SPLICING.

Brown JW, Simpson CG.

Annu Rev Plant Physiol Plant Mol Biol. 1998 Jun;49:77-95.

PMID:
15012228
29.

Dual functionality of a plant U-rich intronic sequence element.

Simpson CG, Jennings SN, Clark GP, Thow G, Brown JW.

Plant J. 2004 Jan;37(1):82-91.

30.

Mutagenesis of key amino acids alters activity of a Saccharomyces cerevisiae endo-polygalacturonase expressed in Pichia pastoris.

Blanco P, Thow G, Simpson CG, Villa TG, Williamson B.

FEMS Microbiol Lett. 2002 May 7;210(2):187-91.

31.

Splicing signals and factors in plant intron removal.

Brown JW, Simpson CG, Thow G, Clark GP, Jennings SN, Medina-Escobar N, Haupt S, Chapman SC, Oparka KJ.

Biochem Soc Trans. 2002 Apr;30(2):146-9. Review.

PMID:
12023842
32.

Mutational analysis of a plant branchpoint and polypyrimidine tract required for constitutive splicing of a mini-exon.

Simpson CG, Thow G, Clark GP, Jennings SN, Watters JA, Brown JW.

RNA. 2002 Jan;8(1):47-56.

33.

Cloning and characterization of two subunits of Arabidopsis thaliana nuclear cap-binding complex.

Kmieciak M, Simpson CG, Lewandowska D, Brown JW, Jarmolowski A.

Gene. 2002 Jan 23;283(1-2):171-83.

PMID:
11867224
34.

Multiple snoRNA gene clusters from Arabidopsis.

Brown JW, Clark GP, Leader DJ, Simpson CG, Lowe T.

RNA. 2001 Dec;7(12):1817-32.

35.

Choriocarcinomatous metaplasia of a metachronous adenocarcinoma of the colon.

Kiran RP, Visvanathan R, Simpson CG.

Eur J Surg Oncol. 2001 Jun;27(4):436-7.

PMID:
11417994
36.

Expression of intron-containing GUS constructs is reduced due to activation of a cryptic 5' splice site.

Ibrahim AF, Watters JA, Clark GP, Thomas CJ, Brown JW, Simpson CG.

Mol Genet Genomics. 2001 May;265(3):455-60.

PMID:
11405628
37.

Requirements for mini-exon inclusion in potato invertase mRNAs provides evidence for exon-scanning interactions in plants.

Simpson CG, Hedley PE, Watters JA, Clark GP, McQuade C, Machray GC, Brown JW.

RNA. 2000 Mar;6(3):422-33.

38.

Characterization of exon skipping mutants of the COP1 gene from Arabidopsis.

Simpson CG, McQuade C, Lyon J, Brown JW.

Plant J. 1998 Jul;15(1):125-31.

39.

Use of histopathology in the practice of necropsy.

Simpson CG.

J Clin Pathol. 1998 Mar;51(3):262. No abstract available.

40.

Processing of vertebrate box C/D small nucleolar RNAs in plant cells.

Leader DJ, Clark GP, Boag J, Watters JA, Simpson CG, Watkins NJ, Maxwell ES, Brown JW.

Eur J Biochem. 1998 Apr 1;253(1):154-60.

41.

East meets West: a comparison of eastern block/western aeromedical practices.

Lyons TJ, Neel RL, Simpson CG, Moore VA, Van Syoc DL, Knowles JR, Salamanca VP.

Aviat Space Environ Med. 1997 Dec;68(12):1150-3.

PMID:
9408568
42.

Arabidopsis consensus intron sequences.

Brown JW, Smith P, Simpson CG.

Plant Mol Biol. 1996 Nov;32(3):531-5.

PMID:
8980502
43.

Phraseology in quality assurance reports.

Simpson CG.

J Clin Pathol. 1996 Aug;49(8):693. No abstract available.

44.

Epithelioid hemangioendothelioma of the lung.

Corrin B, Dewar A, Simpson CG.

Ultrastruct Pathol. 1996 Jul-Aug;20(4):345-7.

PMID:
8837341
45.

Mutation of putative branchpoint consensus sequences in plant introns reduces splicing efficiency.

Simpson CG, Clark G, Davidson D, Smith P, Brown JW.

Plant J. 1996 Mar;9(3):369-80.

46.

Cases from the aerospace medicine residents' teaching file. Case #61. A case of varicella.

Simpson CG, Lyons TJ.

Aviat Space Environ Med. 1995 Feb;66(2):177-9. No abstract available.

PMID:
7726785
47.

Applications of RT-PCR.

Simpson CG, Brown JW.

Methods Mol Biol. 1995;49:257-69. No abstract available.

PMID:
8563811
48.

Primer extension assay.

Simpson CG, Brown JW.

Methods Mol Biol. 1995;49:249-56. No abstract available.

PMID:
8563810
49.

RNase A/T1 protection assay.

Simpson CG, Brown JW.

Methods Mol Biol. 1995;49:239-47. No abstract available.

PMID:
8563809

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