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Items: 1 to 50 of 153

1.

Bacteriocyte Reprogramming to Cope With Nutritional Stress in a Phloem Sap Feeding Hemipteran, the Pea Aphid Acyrthosiphon pisum.

Colella S, Parisot N, Simonet P, Gaget K, Duport G, Baa-Puyoulet P, Rahbé Y, Charles H, Febvay G, Callaerts P, Calevro F.

Front Physiol. 2018 Oct 25;9:1498. doi: 10.3389/fphys.2018.01498. eCollection 2018.

2.

Long-term efficacy and effectiveness of a behavioural and community-based exercise intervention (Urban Training) to increase physical activity in patients with COPD: a randomised controlled trial.

Arbillaga-Etxarri A, Gimeno-Santos E, Barberan-Garcia A, Balcells E, Benet M, Borrell E, Celorrio N, Delgado A, Jané C, Marin A, Martín-Cantera C, Monteagudo M, Montellà N, Muñoz L, Ortega P, Rodríguez DA, Rodríguez-Roisin R, Simonet P, Torán-Monserrat P, Torrent-Pallicer J, Vall-Casas P, Vilaró J, Garcia-Aymerich J.

Eur Respir J. 2018 Oct 18;52(4). pii: 1800063. doi: 10.1183/13993003.00063-2018. Print 2018 Oct.

3.

Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance.

Larsson DGJ, Andremont A, Bengtsson-Palme J, Brandt KK, de Roda Husman AM, Fagerstedt P, Fick J, Flach CF, Gaze WH, Kuroda M, Kvint K, Laxminarayan R, Manaia CM, Nielsen KM, Plant L, Ploy MC, Segovia C, Simonet P, Smalla K, Snape J, Topp E, van Hengel AJ, Verner-Jeffreys DW, Virta MPJ, Wellington EM, Wernersson AS.

Environ Int. 2018 Aug;117:132-138. doi: 10.1016/j.envint.2018.04.041. Epub 2018 May 7.

4.

Bacteriocyte cell death in the pea aphid/Buchnera symbiotic system.

Simonet P, Gaget K, Balmand S, Ribeiro Lopes M, Parisot N, Buhler K, Duport G, Vulsteke V, Febvay G, Heddi A, Charles H, Callaerts P, Calevro F.

Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):E1819-E1828. doi: 10.1073/pnas.1720237115. Epub 2018 Feb 5.

5.

Human dissemination of genes and microorganisms in Earth's Critical Zone.

Zhu YG, Gillings M, Simonet P, Stekel D, Banwart S, Penuelas J.

Glob Chang Biol. 2018 Apr;24(4):1488-1499. doi: 10.1111/gcb.14003. Epub 2017 Dec 20. Review.

PMID:
29266645
6.

Microbial mass movements.

Zhu YG, Gillings M, Simonet P, Stekel D, Banwart S, Penuelas J.

Science. 2017 Sep 15;357(6356):1099-1100. doi: 10.1126/science.aao3007. No abstract available.

PMID:
28912233
7.

Gate-Defined One-Dimensional Channel and Broken Symmetry States in MoS2 van der Waals Heterostructures.

Pisoni R, Lee Y, Overweg H, Eich M, Simonet P, Watanabe K, Taniguchi T, Gorbachev R, Ihn T, Ensslin K.

Nano Lett. 2017 Aug 9;17(8):5008-5011. doi: 10.1021/acs.nanolett.7b02186. Epub 2017 Jul 7.

PMID:
28686030
8.

Alternative splicing of CNOT7 diversifies CCR4-NOT functions.

Chapat C, Chettab K, Simonet P, Wang P, De La Grange P, Le Romancer M, Corbo L.

Nucleic Acids Res. 2017 Aug 21;45(14):8508-8523. doi: 10.1093/nar/gkx506.

9.

Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome.

Hily JM, Demanèche S, Poulicard N, Tannières M, Djennane S, Beuve M, Vigne E, Demangeat G, Komar V, Gertz C, Marmonier A, Hemmer C, Vigneron S, Marais A, Candresse T, Simonet P, Lemaire O.

Plant Biotechnol J. 2018 Jan;16(1):208-220. doi: 10.1111/pbi.12761. Epub 2017 Aug 9.

10.

Spanish Guidelines for Management of Chronic Obstructive Pulmonary Disease (GesEPOC) 2017. Pharmacological Treatment of Stable Phase.

Miravitlles M, Soler-Cataluña JJ, Calle M, Molina J, Almagro P, Quintano JA, Trigueros JA, Cosío BG, Casanova C, Antonio Riesco J, Simonet P, Rigau D, Soriano JB, Ancochea J.

Arch Bronconeumol. 2017 Jun;53(6):324-335. doi: 10.1016/j.arbres.2017.03.018. Epub 2017 May 3. English, Spanish.

11.

Survival and electrotransformation of Pseudomonas syringae strains under simulated cloud-like conditions.

Blanchard LS, Monin A, Ouertani H, Touaibia L, Michel E, Buret F, Simonet P, Morris CE, Demanèche S.

FEMS Microbiol Ecol. 2017 May 1;93(5). doi: 10.1093/femsec/fix057.

PMID:
28459967
12.

Oscillating Magnetoresistance in Graphene p-n Junctions at Intermediate Magnetic Fields.

Overweg H, Eggimann H, Liu MH, Varlet A, Eich M, Simonet P, Lee Y, Watanabe K, Taniguchi T, Richter K, Fal'ko VI, Ensslin K, Ihn T.

Nano Lett. 2017 May 10;17(5):2852-2857. doi: 10.1021/acs.nanolett.6b05318. Epub 2017 Apr 6.

PMID:
28383919
13.

Microbial soil community analyses for forensic science: Application to a blind test.

Demanèche S, Schauser L, Dawson L, Franqueville L, Simonet P.

Forensic Sci Int. 2017 Jan;270:153-158. doi: 10.1016/j.forsciint.2016.12.004. Epub 2016 Dec 9.

PMID:
27984802
14.

Prevalence and incidence of bronchiectasis in Catalonia, Spain: A population-based study.

Monteagudo M, Rodríguez-Blanco T, Barrecheguren M, Simonet P, Miravitlles M.

Respir Med. 2016 Dec;121:26-31. doi: 10.1016/j.rmed.2016.10.014. Epub 2016 Oct 25.

PMID:
27888988
15.

Soil characterisation by bacterial community analysis for forensic applications: A quantitative comparison of environmental technologies.

Habtom H, Demanèche S, Dawson L, Azulay C, Matan O, Robe P, Gafny R, Simonet P, Jurkevitch E, Pasternak Z.

Forensic Sci Int Genet. 2017 Jan;26:21-29. doi: 10.1016/j.fsigen.2016.10.005. Epub 2016 Oct 6.

PMID:
27750077
16.

A specific anti-citrullinated protein antibody profile identifies a group of rheumatoid arthritis patients with a toll-like receptor 4-mediated disease.

Hatterer E, Shang L, Simonet P, Herren S, Daubeuf B, Teixeira S, Reilly J, Elson G, Nelson R, Gabay C, Sokolove J, McInnes IB, Kosco-Vilbois M, Ferlin W, Monnet E, De Min C.

Arthritis Res Ther. 2016 Oct 6;18(1):224.

17.

Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids.

Simonet P, Gaget K, Parisot N, Duport G, Rey M, Febvay G, Charles H, Callaerts P, Colella S, Calevro F.

Sci Rep. 2016 Oct 3;6:34321. doi: 10.1038/srep34321.

18.

Editorial: Special section of FEMS Microbiology Ecology on the environmental dimension of antibiotic resistance.

Smalla K, Simonet P, Tiedje J, Topp E.

FEMS Microbiol Ecol. 2016 Nov;92(11). pii: fiw172. doi: 10.1093/femsec/fiw172. Epub 2016 Sep 7. No abstract available.

PMID:
27604258
19.

Metagenomic analysis reveals that bacteriophages are reservoirs of antibiotic resistance genes.

Subirats J, Sànchez-Melsió A, Borrego CM, Balcázar JL, Simonet P.

Int J Antimicrob Agents. 2016 Aug;48(2):163-7. doi: 10.1016/j.ijantimicag.2016.04.028. Epub 2016 Jun 3.

PMID:
27312355
20.

Diagnosis of alpha-1 antitrypsin deficiency: a population-based study.

Barrecheguren M, Monteagudo M, Simonet P, Llor C, Rodriguez E, Ferrer J, Esquinas C, Miravitlles M.

Int J Chron Obstruct Pulmon Dis. 2016 May 10;11:999-1004. doi: 10.2147/COPD.S108505. eCollection 2016.

21.

Back to the Future of Soil Metagenomics.

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.

Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016. No abstract available.

22.

Direct flow cytometry measurements reveal a fine-tuning of symbiotic cell dynamics according to the host developmental needs in aphid symbiosis.

Simonet P, Duport G, Gaget K, Weiss-Gayet M, Colella S, Febvay G, Charles H, Viñuelas J, Heddi A, Calevro F.

Sci Rep. 2016 Jan 29;6:19967. doi: 10.1038/srep19967.

23.

Functional Metagenomics: Construction and High-Throughput Screening of Fosmid Libraries for Discovery of Novel Carbohydrate-Active Enzymes.

Ufarté L, Bozonnet S, Laville E, Cecchini DA, Pizzut-Serin S, Jacquiod S, Demanèche S, Simonet P, Franqueville L, Veronese GP.

Methods Mol Biol. 2016;1399:257-71. doi: 10.1007/978-1-4939-3369-3_15.

PMID:
26791508
24.

RisaAligner software for aligning fluorescence data between Agilent 2100 Bioanalyzer chips: Application to soil microbial community analysis.

Navarro E, Fabrègue O, Scorretti R, Reboulet J, Simonet P, Dawson L, Demanèche S.

Biotechniques. 2015 Dec 1;59(6):347, 349-52, 354-6 passim. doi: 10.2144/000114363. eCollection 2015 Dec.

25.

Development and applications of a DNA labeling method with magnetic nanoparticles to study the role of horizontal gene transfer events between bacteria in soil pollutant bioremediation processes.

Pivetal J, Frénéa-Robin M, Haddour N, Vézy C, Zanini LF, Ciuta G, Dempsey NM, Dumas-Bouchiat F, Reyne G, Bégin-Colin S, Felder-Flesh D, Ghobril C, Pourroy G, Simonet P.

Environ Sci Pollut Res Int. 2015 Dec;22(24):20322-7.

PMID:
26498963
26.

Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics.

Delmont TO, Eren AM, Maccario L, Prestat E, Esen ÖC, Pelletier E, Le Paslier D, Simonet P, Vogel TM.

Front Microbiol. 2015 Apr 30;6:358. doi: 10.3389/fmicb.2015.00358. eCollection 2015.

27.

[Prevalence of nasal carriage of Staphylococcus aureus and Streptococcus pneumoniae in Primary Care and factors associated with colonization].

Boada A, Almeda J, Grenzner E, Pons-Vigués M, Morros R, Juvé R, Simonet PJ, den Heijer CD, Bolíbar B.

Enferm Infecc Microbiol Clin. 2015 Aug-Sep;33(7):451-7. doi: 10.1016/j.eimc.2014.10.014. Epub 2015 Jan 21. Spanish.

PMID:
25617018
28.

Engaging workers in WRMSD prevention: Two interdisciplinary case studies in an activity clinic.

Kloetzer L, Quillerou-Grivot E, Simonet P.

Work. 2015 Jun 5;51(2):161-73. doi: 10.3233/WOR-141970.

PMID:
25425590
29.

The soil resistome: a critical review on antibiotic resistance origins, ecology and dissemination potential in telluric bacteria.

Nesme J, Simonet P.

Environ Microbiol. 2015 Apr;17(4):913-30. doi: 10.1111/1462-2920.12631. Epub 2014 Dec 17. Review.

PMID:
25286745
30.

Magnetic nanoparticle DNA labeling for individual bacterial cell detection and recovery.

Pivetal J, Ciuta G, Frenea-Robin M, Haddour N, Dempsey NM, Dumas-Bouchiat F, Simonet P.

J Microbiol Methods. 2014 Dec;107:84-91. doi: 10.1016/j.mimet.2014.09.006. Epub 2014 Oct 1.

PMID:
25264902
31.

Anomalous sequence of quantum Hall liquids revealing a tunable Lifshitz transition in bilayer graphene.

Varlet A, Bischoff D, Simonet P, Watanabe K, Taniguchi T, Ihn T, Ensslin K, Mucha-Kruczyński M, Fal'ko VI.

Phys Rev Lett. 2014 Sep 12;113(11):116602. Epub 2014 Sep 9.

PMID:
25259994
32.

Fabry-Pérot interference in gapped bilayer graphene with broken anti-Klein tunneling.

Varlet A, Liu MH, Krueckl V, Bischoff D, Simonet P, Watanabe K, Taniguchi T, Richter K, Ensslin K, Ihn T.

Phys Rev Lett. 2014 Sep 12;113(11):116601. Epub 2014 Sep 8.

PMID:
25259993
33.

Large-scale metagenomic-based study of antibiotic resistance in the environment.

Nesme J, Cécillon S, Delmont TO, Monier JM, Vogel TM, Simonet P.

Curr Biol. 2014 May 19;24(10):1096-100. doi: 10.1016/j.cub.2014.03.036. Epub 2014 May 8.

34.

Ultrasmooth metallic foils for growth of high quality graphene by chemical vapor deposition.

Procházka P, Mach J, Bischoff D, Lišková Z, Dvořák P, Vaňatka M, Simonet P, Varlet A, Hemzal D, Petrenec M, Kalina L, Bartošík M, Ensslin K, Varga P, Čechal J, Šikola T.

Nanotechnology. 2014 May 9;25(18):185601. doi: 10.1088/0957-4484/25/18/185601. Epub 2014 Apr 16.

PMID:
24739598
35.

Characterization of new bacterial catabolic genes and mobile genetic elements by high throughput genetic screening of a soil metagenomic library.

Jacquiod S, Demanèche S, Franqueville L, Ausec L, Xu Z, Delmont TO, Dunon V, Cagnon C, Mandic-Mulec I, Vogel TM, Simonet P.

J Biotechnol. 2014 Nov 20;190:18-29. doi: 10.1016/j.jbiotec.2014.03.036. Epub 2014 Apr 8.

PMID:
24721211
36.

The future of skin metagenomics.

Mathieu A, Vogel TM, Simonet P.

Res Microbiol. 2014 Feb-Mar;165(2):69-76. doi: 10.1016/j.resmic.2013.12.002. Epub 2013 Dec 20. Review.

PMID:
24361423
37.

Soil bacterial community shifts after chitin enrichment: an integrative metagenomic approach.

Jacquiod S, Franqueville L, Cécillon S, Vogel TM, Simonet P.

PLoS One. 2013 Nov 20;8(11):e79699. doi: 10.1371/journal.pone.0079699. eCollection 2013.

38.

Meeting report: 1st international functional metagenomics workshop may 7-8, 2012, st. Jacobs, ontario, Canada.

Engel K, Ashby D, Brady SF, Cowan DA, Doemer J, Edwards EA, Fiebig K, Martens EC, McCormac D, Mead DA, Miyazaki K, Moreno-Hagelsieb G, O'Gara F, Reid A, Rose DR, Simonet P, Sjöling S, Smalla K, Streit WR, Tedman-Jones J, Valla S, Wellington EM, Wu CC, Liles MR, Neufeld JD, Sessitsch A, Charles TC.

Stand Genomic Sci. 2013 Apr 15;8(1):106-11. doi: 10.4056/sigs.3406845. eCollection 2013 Apr 15.

39.

Life on human surfaces: skin metagenomics.

Mathieu A, Delmont TO, Vogel TM, Robe P, Nalin R, Simonet P.

PLoS One. 2013 Jun 12;8(6):e65288. doi: 10.1371/journal.pone.0065288. Print 2013.

40.

Influence of humans on evolution and mobilization of environmental antibiotic resistome.

Gaze WH, Krone SM, Larsson DG, Li XZ, Robinson JA, Simonet P, Smalla K, Timinouni M, Topp E, Wellington EM, Wright GD, Zhu YG.

Emerg Infect Dis. 2013 Jul;19(7). doi: 10.3201/eid1907.120871.

41.

Mastering methodological pitfalls for surviving the metagenomic jungle.

Delmont TO, Simonet P, Vogel TM.

Bioessays. 2013 Aug;35(8):744-54. doi: 10.1002/bies.201200155. Epub 2013 Jun 11.

PMID:
23757040
42.

Describing microbial communities and performing global comparisons in the 'omic era.

Delmont TO, Simonet P, Vogel TM.

ISME J. 2012 Sep;6(9):1625-8. doi: 10.1038/ismej.2012.55. Epub 2012 Jun 21. No abstract available.

43.

Fate of invading bacteria in soil and survival of transformants after simulated uptake of transgenes, as evaluated by a model system based on lindane degradation.

Zhang X, Nesme J, Simonet P, Frostegård A.

Res Microbiol. 2012 Apr;163(3):200-10. doi: 10.1016/j.resmic.2012.01.007. Epub 2012 Feb 10.

PMID:
22366693
44.

Structure, fluctuation and magnitude of a natural grassland soil metagenome.

Delmont TO, Prestat E, Keegan KP, Faubladier M, Robe P, Clark IM, Pelletier E, Hirsch PR, Meyer F, Gilbert JA, Le Paslier D, Simonet P, Vogel TM.

ISME J. 2012 Sep;6(9):1677-87. doi: 10.1038/ismej.2011.197. Epub 2012 Feb 2.

45.

Metagenomic comparison of direct and indirect soil DNA extraction approaches.

Delmont TO, Robe P, Clark I, Simonet P, Vogel TM.

J Microbiol Methods. 2011 Sep;86(3):397-400. doi: 10.1016/j.mimet.2011.06.013. Epub 2011 Jun 25.

PMID:
21723887
46.

Development of a new tool to improve gene transfer frequency calculations.

Demanèche S, Brard C, Lima O, Binet F, Simonet P.

J Microbiol Methods. 2011 Aug;86(2):255-7. doi: 10.1016/j.mimet.2011.05.014. Epub 2011 May 27.

PMID:
21640142
47.

Soil-specific limitations for access and analysis of soil microbial communities by metagenomics.

Lombard N, Prestat E, van Elsas JD, Simonet P.

FEMS Microbiol Ecol. 2011 Oct;78(1):31-49. doi: 10.1111/j.1574-6941.2011.01140.x. Epub 2011 Jun 28. Review.

48.

Metagenomic exploration of antibiotic resistance in soil.

Monier JM, Demanèche S, Delmont TO, Mathieu A, Vogel TM, Simonet P.

Curr Opin Microbiol. 2011 Jun;14(3):229-35. doi: 10.1016/j.mib.2011.04.010. Epub 2011 May 23. Review.

PMID:
21601510
49.

Metagenomic mining for microbiologists.

Delmont TO, Malandain C, Prestat E, Larose C, Monier JM, Simonet P, Vogel TM.

ISME J. 2011 Dec;5(12):1837-43. doi: 10.1038/ismej.2011.61. Epub 2011 May 19.

50.

Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria.

Demanèche S, Monier JM, Dugat-Bony E, Simonet P.

FEMS Microbiol Ecol. 2011 Oct;78(1):129-36. doi: 10.1111/j.1574-6941.2011.01126.x. Epub 2011 May 31.

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